data_2VAY # _model_server_result.job_id ZXKnpizQVmiaWRhlbWBRcg _model_server_result.datetime_utc '2024-11-23 07:57:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2vay # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1150}' # _entry.id 2VAY # _exptl.entry_id 2VAY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 113.69 _cell.angle_gamma 90 _cell.entry_id 2VAY _cell.length_a 84.92 _cell.length_b 34.67 _cell.length_c 62.98 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2VAY _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 18 A ASP 20 1_555 C CA CA . A CA 1149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? metalc ? metalc2 A OD2 ASP 20 A ASP 22 1_555 C CA CA . A CA 1149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? metalc ? metalc3 A OD1 ASP 22 A ASP 24 1_555 C CA CA . A CA 1149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? metalc ? metalc4 A O THR 24 A THR 26 1_555 C CA CA . A CA 1149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.393 ? metalc ? metalc5 A OE1 GLU 29 A GLU 31 1_555 C CA CA . A CA 1149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.499 ? metalc ? metalc6 A OE2 GLU 29 A GLU 31 1_555 C CA CA . A CA 1149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.438 ? metalc ? metalc7 A OD1 ASP 54 A ASP 56 1_555 D CA CA . A CA 1150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? metalc ? metalc8 A OD1 ASP 56 A ASP 58 1_555 D CA CA . A CA 1150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.597 ? metalc ? metalc9 A OD1 ASN 58 A ASN 60 1_555 D CA CA . A CA 1150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? metalc ? metalc10 A O THR 60 A THR 62 1_555 D CA CA . A CA 1150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.494 ? metalc ? metalc11 A OE2 GLU 65 A GLU 67 1_555 D CA CA . A CA 1150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.372 ? metalc ? metalc12 A OE1 GLU 65 A GLU 67 1_555 D CA CA . A CA 1150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.535 ? metalc ? metalc13 A OD2 ASP 91 A ASP 93 1_555 E CA CA . A CA 1151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? metalc ? metalc14 A OD1 ASP 93 A ASP 95 1_555 E CA CA . A CA 1151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.526 ? metalc ? metalc15 A OD1 ASN 95 A ASN 97 1_555 E CA CA . A CA 1151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.433 ? metalc ? metalc16 A O TYR 97 A TYR 99 1_555 E CA CA . A CA 1151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? metalc ? metalc17 A OE1 GLU 102 A GLU 104 1_555 E CA CA . A CA 1151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.633 ? metalc ? metalc18 A OE2 GLU 102 A GLU 104 1_555 E CA CA . A CA 1151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? metalc ? metalc19 A OD1 ASP 127 A ASP 129 1_555 F CA CA . A CA 1152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? metalc ? metalc20 A OD2 ASP 129 A ASP 131 1_555 F CA CA . A CA 1152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.394 ? metalc ? metalc21 A OD2 ASP 131 A ASP 133 1_555 F CA CA . A CA 1152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.552 ? metalc ? metalc22 A O GLN 133 A GLN 135 1_555 F CA CA . A CA 1152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.456 ? metalc ? metalc23 A OE1 GLU 138 A GLU 140 1_555 F CA CA . A CA 1152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.584 ? metalc ? metalc24 A OE2 GLU 138 A GLU 140 1_555 F CA CA . A CA 1152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.508 ? metalc ? metalc25 C CA CA . A CA 1149 1_555 H O HOH . A HOH 2021 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? metalc ? metalc26 D CA CA . A CA 1150 1_555 H O HOH . A HOH 2062 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? metalc ? metalc27 D CA CA . A CA 1150 1_555 H O HOH . A HOH 2065 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.523 ? metalc ? metalc28 E CA CA . A CA 1151 1_555 H O HOH . A HOH 2084 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.645 ? metalc ? metalc29 F CA CA . A CA 1152 1_555 H O HOH . A HOH 2109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2VAY _atom_sites.fract_transf_matrix[1][1] 0.011776 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005167 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.028843 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017339 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CA A 1 1149 1149 CA CA . D 3 CA A 1 1150 1150 CA CA . E 3 CA A 1 1151 1151 CA CA . F 3 CA A 1 1152 1152 CA CA . G 4 CL B 1 2543 2543 CL CL . H 5 HOH A 1 2001 2001 HOH HOH . H 5 HOH A 2 2002 2002 HOH HOH . H 5 HOH A 3 2003 2003 HOH HOH . H 5 HOH A 4 2004 2004 HOH HOH . H 5 HOH A 5 2005 2005 HOH HOH . H 5 HOH A 6 2006 2006 HOH HOH . H 5 HOH A 7 2007 2007 HOH HOH . H 5 HOH A 8 2008 2008 HOH HOH . H 5 HOH A 9 2009 2009 HOH HOH . H 5 HOH A 10 2010 2010 HOH HOH . H 5 HOH A 11 2011 2011 HOH HOH . H 5 HOH A 12 2012 2012 HOH HOH . H 5 HOH A 13 2013 2013 HOH HOH . H 5 HOH A 14 2014 2014 HOH HOH . H 5 HOH A 15 2015 2015 HOH HOH . H 5 HOH A 16 2016 2016 HOH HOH . H 5 HOH A 17 2017 2017 HOH HOH . H 5 HOH A 18 2018 2018 HOH HOH . H 5 HOH A 19 2019 2019 HOH HOH . H 5 HOH A 20 2020 2020 HOH HOH . H 5 HOH A 21 2021 2021 HOH HOH . H 5 HOH A 22 2022 2022 HOH HOH . H 5 HOH A 23 2023 2023 HOH HOH . H 5 HOH A 24 2024 2024 HOH HOH . H 5 HOH A 25 2025 2025 HOH HOH . H 5 HOH A 26 2026 2026 HOH HOH . H 5 HOH A 27 2027 2027 HOH HOH . H 5 HOH A 28 2028 2028 HOH HOH . H 5 HOH A 29 2029 2029 HOH HOH . H 5 HOH A 30 2030 2030 HOH HOH . H 5 HOH A 31 2031 2031 HOH HOH . H 5 HOH A 32 2032 2032 HOH HOH . H 5 HOH A 33 2033 2033 HOH HOH . H 5 HOH A 34 2034 2034 HOH HOH . H 5 HOH A 35 2035 2035 HOH HOH . H 5 HOH A 36 2036 2036 HOH HOH . H 5 HOH A 37 2037 2037 HOH HOH . H 5 HOH A 38 2038 2038 HOH HOH . H 5 HOH A 39 2039 2039 HOH HOH . H 5 HOH A 40 2040 2040 HOH HOH . H 5 HOH A 41 2041 2041 HOH HOH . H 5 HOH A 42 2042 2042 HOH HOH . H 5 HOH A 43 2043 2043 HOH HOH . H 5 HOH A 44 2044 2044 HOH HOH . H 5 HOH A 45 2045 2045 HOH HOH . H 5 HOH A 46 2046 2046 HOH HOH . H 5 HOH A 47 2047 2047 HOH HOH . H 5 HOH A 48 2048 2048 HOH HOH . H 5 HOH A 49 2049 2049 HOH HOH . H 5 HOH A 50 2050 2050 HOH HOH . H 5 HOH A 51 2051 2051 HOH HOH . H 5 HOH A 52 2052 2052 HOH HOH . H 5 HOH A 53 2053 2053 HOH HOH . H 5 HOH A 54 2054 2054 HOH HOH . H 5 HOH A 55 2055 2055 HOH HOH . H 5 HOH A 56 2056 2056 HOH HOH . H 5 HOH A 57 2057 2057 HOH HOH . H 5 HOH A 58 2058 2058 HOH HOH . H 5 HOH A 59 2059 2059 HOH HOH . H 5 HOH A 60 2060 2060 HOH HOH . H 5 HOH A 61 2061 2061 HOH HOH . H 5 HOH A 62 2062 2062 HOH HOH . H 5 HOH A 63 2063 2063 HOH HOH . H 5 HOH A 64 2064 2064 HOH HOH . H 5 HOH A 65 2065 2065 HOH HOH . H 5 HOH A 66 2066 2066 HOH HOH . H 5 HOH A 67 2067 2067 HOH HOH . H 5 HOH A 68 2068 2068 HOH HOH . H 5 HOH A 69 2069 2069 HOH HOH . H 5 HOH A 70 2070 2070 HOH HOH . H 5 HOH A 71 2071 2071 HOH HOH . H 5 HOH A 72 2072 2072 HOH HOH . H 5 HOH A 73 2073 2073 HOH HOH . H 5 HOH A 74 2074 2074 HOH HOH . H 5 HOH A 75 2075 2075 HOH HOH . H 5 HOH A 76 2076 2076 HOH HOH . H 5 HOH A 77 2077 2077 HOH HOH . H 5 HOH A 78 2078 2078 HOH HOH . H 5 HOH A 79 2079 2079 HOH HOH . H 5 HOH A 80 2080 2080 HOH HOH . H 5 HOH A 81 2081 2081 HOH HOH . H 5 HOH A 82 2082 2082 HOH HOH . H 5 HOH A 83 2083 2083 HOH HOH . H 5 HOH A 84 2084 2084 HOH HOH . H 5 HOH A 85 2085 2085 HOH HOH . H 5 HOH A 86 2086 2086 HOH HOH . H 5 HOH A 87 2087 2087 HOH HOH . H 5 HOH A 88 2088 2088 HOH HOH . H 5 HOH A 89 2089 2089 HOH HOH . H 5 HOH A 90 2090 2090 HOH HOH . H 5 HOH A 91 2091 2091 HOH HOH . H 5 HOH A 92 2092 2092 HOH HOH . H 5 HOH A 93 2093 2093 HOH HOH . H 5 HOH A 94 2094 2094 HOH HOH . H 5 HOH A 95 2095 2095 HOH HOH . H 5 HOH A 96 2096 2096 HOH HOH . H 5 HOH A 97 2097 2097 HOH HOH . H 5 HOH A 98 2098 2098 HOH HOH . H 5 HOH A 99 2099 2099 HOH HOH . H 5 HOH A 100 2100 2100 HOH HOH . H 5 HOH A 101 2101 2101 HOH HOH . H 5 HOH A 102 2102 2102 HOH HOH . H 5 HOH A 103 2103 2103 HOH HOH . H 5 HOH A 104 2104 2104 HOH HOH . H 5 HOH A 105 2105 2105 HOH HOH . H 5 HOH A 106 2106 2106 HOH HOH . H 5 HOH A 107 2107 2107 HOH HOH . H 5 HOH A 108 2108 2108 HOH HOH . H 5 HOH A 109 2109 2109 HOH HOH . H 5 HOH A 110 2110 2110 HOH HOH . H 5 HOH A 111 2111 2111 HOH HOH . H 5 HOH A 112 2112 2112 HOH HOH . H 5 HOH A 113 2113 2113 HOH HOH . H 5 HOH A 114 2114 2114 HOH HOH . H 5 HOH A 115 2115 2115 HOH HOH . H 5 HOH A 116 2116 2116 HOH HOH . H 5 HOH A 117 2117 2117 HOH HOH . H 5 HOH A 118 2118 2118 HOH HOH . I 5 HOH B 1 2001 2001 HOH HOH . I 5 HOH B 2 2002 2002 HOH HOH . I 5 HOH B 3 2003 2003 HOH HOH . I 5 HOH B 4 2004 2004 HOH HOH . I 5 HOH B 5 2005 2005 HOH HOH . I 5 HOH B 6 2006 2006 HOH HOH . I 5 HOH B 7 2007 2007 HOH HOH . I 5 HOH B 8 2008 2008 HOH HOH . I 5 HOH B 9 2009 2009 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x -4.736 _atom_site.Cartn_y 16.945 _atom_site.Cartn_z 7.743 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 21.23 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 1150 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 1 #