data_2VBV # _model_server_result.job_id 7pdeJ8APHvACS2wZnhAcNA _model_server_result.datetime_utc '2024-11-16 23:51:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2vbv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":1140}' # _entry.id 2VBV # _exptl.entry_id 2VBV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2VBV _cell.length_a 41.482 _cell.length_b 73.299 _cell.length_c 104.907 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2VBV _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS monomeric 1 author_and_software_defined_assembly 1 PQS monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,J 1 1 B,H,I,K 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 43 A THR 43 1_555 D MG MG . A MG 1136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? metalc ? metalc2 A O THR 43 A THR 43 1_555 D MG MG . A MG 1136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? metalc ? metalc3 A OD1 ASN 45 A ASN 45 1_555 D MG MG . A MG 1136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? metalc ? metalc4 C O2B CDP . A CDP 1135 1_555 D MG MG . A MG 1136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? metalc ? metalc5 C O1A CDP . A CDP 1135 1_555 D MG MG . A MG 1136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? metalc ? metalc6 D MG MG . A MG 1136 1_555 G O1P FMN . A FMN 1140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? metalc ? metalc7 B OG1 THR 43 B THR 43 1_555 H MG MG . B MG 1136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? metalc ? metalc8 B O THR 43 B THR 43 1_555 H MG MG . B MG 1136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.195 ? metalc ? metalc9 B OD1 ASN 45 B ASN 45 1_555 H MG MG . B MG 1136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? metalc ? metalc10 H MG MG . B MG 1136 1_555 I O2B CDP . B CDP 1137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.232 ? metalc ? metalc11 H MG MG . B MG 1136 1_555 I O1A CDP . B CDP 1137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? metalc ? metalc12 H MG MG . B MG 1136 1_555 K O HOH . B HOH 2010 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.39 ? # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 111 n n N1 C10 FMN doub 112 n n C2 O2 FMN doub 113 n n C2 N3 FMN sing 114 n n N3 C4 FMN sing 115 n n N3 HN3 FMN sing 116 n n C4 O4 FMN doub 117 n n C4 C4A FMN sing 118 n n C4A N5 FMN doub 119 n n C4A C10 FMN sing 120 n n N5 C5A FMN sing 121 n n C5A C6 FMN doub 122 n y C5A C9A FMN sing 123 n y C6 C7 FMN sing 124 n y C6 H6 FMN sing 125 n n C7 C7M FMN sing 126 n n C7 C8 FMN doub 127 n y C7M HM71 FMN sing 128 n n C7M HM72 FMN sing 129 n n C7M HM73 FMN sing 130 n n C8 C8M FMN sing 131 n n C8 C9 FMN sing 132 n y C8M HM81 FMN sing 133 n n C8M HM82 FMN sing 134 n n C8M HM83 FMN sing 135 n n C9 C9A FMN doub 136 n y C9 H9 FMN sing 137 n n C9A N10 FMN sing 138 n n N10 C10 FMN sing 139 n n N10 C1' FMN sing 140 n n C1' C2' FMN sing 141 n n C1' "H1'1" FMN sing 142 n n C1' "H1'2" FMN sing 143 n n C2' O2' FMN sing 144 n n C2' C3' FMN sing 145 n n C2' H2' FMN sing 146 n n O2' HO2' FMN sing 147 n n C3' O3' FMN sing 148 n n C3' C4' FMN sing 149 n n C3' H3' FMN sing 150 n n O3' HO3' FMN sing 151 n n C4' O4' FMN sing 152 n n C4' C5' FMN sing 153 n n C4' H4' FMN sing 154 n n O4' HO4' FMN sing 155 n n C5' O5' FMN sing 156 n n C5' "H5'1" FMN sing 157 n n C5' "H5'2" FMN sing 158 n n O5' P FMN sing 159 n n P O1P FMN doub 160 n n P O2P FMN sing 161 n n P O3P FMN sing 162 n n O2P HOP2 FMN sing 163 n n O3P HOP3 FMN sing 164 n n # _atom_sites.entry_id 2VBV _atom_sites.fract_transf_matrix[1][1] 0.024107 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013643 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009532 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CDP A 1 1135 1135 CDP CDP . D 3 MG A 1 1136 1136 MG MG . E 4 IOD A 1 1138 1138 IOD IOD . F 5 CL A 1 1139 1139 CL CL . G 6 FMN A 1 1140 1140 FMN FMN . H 3 MG B 1 1136 1136 MG MG . I 2 CDP B 1 1137 1137 CDP CDP . J 7 HOH A 1 2001 2001 HOH HOH . J 7 HOH A 2 2002 2002 HOH HOH . J 7 HOH A 3 2003 2003 HOH HOH . J 7 HOH A 4 2004 2004 HOH HOH . J 7 HOH A 5 2005 2005 HOH HOH . J 7 HOH A 6 2006 2006 HOH HOH . J 7 HOH A 7 2007 2007 HOH HOH . J 7 HOH A 8 2008 2008 HOH HOH . J 7 HOH A 9 2009 2009 HOH HOH . J 7 HOH A 10 2010 2010 HOH HOH . J 7 HOH A 11 2011 2011 HOH HOH . J 7 HOH A 12 2012 2012 HOH HOH . J 7 HOH A 13 2013 2013 HOH HOH . J 7 HOH A 14 2014 2014 HOH HOH . J 7 HOH A 15 2015 2015 HOH HOH . J 7 HOH A 16 2016 2016 HOH HOH . J 7 HOH A 17 2017 2017 HOH HOH . J 7 HOH A 18 2018 2018 HOH HOH . J 7 HOH A 19 2019 2019 HOH HOH . J 7 HOH A 20 2020 2020 HOH HOH . J 7 HOH A 21 2021 2021 HOH HOH . J 7 HOH A 22 2022 2022 HOH HOH . J 7 HOH A 23 2023 2023 HOH HOH . J 7 HOH A 24 2024 2024 HOH HOH . J 7 HOH A 25 2025 2025 HOH HOH . J 7 HOH A 26 2026 2026 HOH HOH . J 7 HOH A 27 2027 2027 HOH HOH . J 7 HOH A 28 2028 2028 HOH HOH . J 7 HOH A 29 2029 2029 HOH HOH . J 7 HOH A 30 2030 2030 HOH HOH . J 7 HOH A 31 2031 2031 HOH HOH . J 7 HOH A 32 2032 2032 HOH HOH . J 7 HOH A 33 2033 2033 HOH HOH . J 7 HOH A 34 2034 2034 HOH HOH . J 7 HOH A 35 2035 2035 HOH HOH . J 7 HOH A 36 2036 2036 HOH HOH . J 7 HOH A 37 2037 2037 HOH HOH . J 7 HOH A 38 2038 2038 HOH HOH . J 7 HOH A 39 2039 2039 HOH HOH . J 7 HOH A 40 2040 2040 HOH HOH . J 7 HOH A 41 2041 2041 HOH HOH . J 7 HOH A 42 2042 2042 HOH HOH . J 7 HOH A 43 2043 2043 HOH HOH . J 7 HOH A 44 2044 2044 HOH HOH . J 7 HOH A 45 2045 2045 HOH HOH . J 7 HOH A 46 2046 2046 HOH HOH . J 7 HOH A 47 2047 2047 HOH HOH . J 7 HOH A 48 2048 2048 HOH HOH . J 7 HOH A 49 2049 2049 HOH HOH . J 7 HOH A 50 2050 2050 HOH HOH . K 7 HOH B 1 2001 2001 HOH HOH . K 7 HOH B 2 2002 2002 HOH HOH . K 7 HOH B 3 2003 2003 HOH HOH . K 7 HOH B 4 2004 2004 HOH HOH . K 7 HOH B 5 2005 2005 HOH HOH . K 7 HOH B 6 2006 2006 HOH HOH . K 7 HOH B 7 2007 2007 HOH HOH . K 7 HOH B 8 2008 2008 HOH HOH . K 7 HOH B 9 2009 2009 HOH HOH . K 7 HOH B 10 2010 2010 HOH HOH . K 7 HOH B 11 2011 2011 HOH HOH . K 7 HOH B 12 2012 2012 HOH HOH . K 7 HOH B 13 2013 2013 HOH HOH . K 7 HOH B 14 2014 2014 HOH HOH . K 7 HOH B 15 2015 2015 HOH HOH . K 7 HOH B 16 2016 2016 HOH HOH . K 7 HOH B 17 2017 2017 HOH HOH . K 7 HOH B 18 2018 2018 HOH HOH . K 7 HOH B 19 2019 2019 HOH HOH . K 7 HOH B 20 2020 2020 HOH HOH . K 7 HOH B 21 2021 2021 HOH HOH . K 7 HOH B 22 2022 2022 HOH HOH . K 7 HOH B 23 2023 2023 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . G 6 -15.368 -18.369 -4.172 1 32.29 ? N1 FMN 1140 A 1 HETATM 2 C C2 FMN . . . G 6 -15.228 -19.617 -4.73 1 35.14 ? C2 FMN 1140 A 1 HETATM 3 O O2 FMN . . . G 6 -16.023 -20.491 -4.37 1 38.63 ? O2 FMN 1140 A 1 HETATM 4 N N3 FMN . . . G 6 -14.242 -19.874 -5.666 1 33.47 ? N3 FMN 1140 A 1 HETATM 5 C C4 FMN . . . G 6 -13.408 -18.816 -6.039 1 34.41 ? C4 FMN 1140 A 1 HETATM 6 O O4 FMN . . . G 6 -12.569 -18.951 -6.928 1 35.85 ? O4 FMN 1140 A 1 HETATM 7 C C4A FMN . . . G 6 -13.537 -17.559 -5.467 1 31.7 ? C4A FMN 1140 A 1 HETATM 8 N N5 FMN . . . G 6 -12.667 -16.527 -5.841 1 32.58 ? N5 FMN 1140 A 1 HETATM 9 C C5A FMN . . . G 6 -12.82 -15.286 -5.236 1 30.25 ? C5A FMN 1140 A 1 HETATM 10 C C6 FMN . . . G 6 -11.951 -14.27 -5.579 1 27.8 ? C6 FMN 1140 A 1 HETATM 11 C C7 FMN . . . G 6 -12.079 -13.036 -5.007 1 26.2 ? C7 FMN 1140 A 1 HETATM 12 C C7M FMN . . . G 6 -11.09 -11.984 -5.404 1 26.73 ? C7M FMN 1140 A 1 HETATM 13 C C8 FMN . . . G 6 -13.077 -12.802 -4.043 1 28.83 ? C8 FMN 1140 A 1 HETATM 14 C C8M FMN . . . G 6 -13.104 -11.565 -3.149 1 24.41 ? C8M FMN 1140 A 1 HETATM 15 C C9 FMN . . . G 6 -13.941 -13.826 -3.677 1 28.73 ? C9 FMN 1140 A 1 HETATM 16 C C9A FMN . . . G 6 -13.825 -15.078 -4.272 1 28.27 ? C9A FMN 1140 A 1 HETATM 17 N N10 FMN . . . G 6 -14.692 -16.096 -3.938 1 27.06 ? N10 FMN 1140 A 1 HETATM 18 C C10 FMN . . . G 6 -14.533 -17.334 -4.529 1 29.17 ? C10 FMN 1140 A 1 HETATM 19 C C1' FMN . . . G 6 -15.931 -15.829 -3.128 1 29.33 ? C1' FMN 1140 A 1 HETATM 20 C C2' FMN . . . G 6 -15.758 -16.37 -1.706 1 33.93 ? C2' FMN 1140 A 1 HETATM 21 O O2' FMN . . . G 6 -15.714 -17.798 -1.734 1 33.61 ? O2' FMN 1140 A 1 HETATM 22 C C3' FMN . . . G 6 -16.909 -16.026 -0.784 1 38.19 ? C3' FMN 1140 A 1 HETATM 23 O O3' FMN . . . G 6 -18.131 -16.292 -1.406 1 42.03 ? O3' FMN 1140 A 1 HETATM 24 C C4' FMN . . . G 6 -16.982 -14.578 -0.378 1 42.09 ? C4' FMN 1140 A 1 HETATM 25 O O4' FMN . . . G 6 -17.042 -13.728 -1.507 1 45.24 ? O4' FMN 1140 A 1 HETATM 26 C C5' FMN . . . G 6 -15.777 -14.222 0.477 1 44.16 ? C5' FMN 1140 A 1 HETATM 27 O O5' FMN . . . G 6 -15.923 -12.94 1.033 1 43.76 ? O5' FMN 1140 A 1 HETATM 28 P P FMN . . . G 6 -16.6 -12.709 2.482 1 43.09 ? P FMN 1140 A 1 HETATM 29 O O1P FMN . . . G 6 -16.278 -11.242 2.691 1 41.68 ? O1P FMN 1140 A 1 HETATM 30 O O2P FMN . . . G 6 -18.084 -12.845 2.448 1 37.6 ? O2P FMN 1140 A 1 HETATM 31 O O3P FMN . . . G 6 -16.028 -13.623 3.565 1 37.37 ? O3P FMN 1140 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #