data_2VBZ # _model_server_result.job_id CNAKZPdjQxZ_KdoiQXyyWg _model_server_result.datetime_utc '2024-11-05 09:24:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2vbz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1151}' # _entry.id 2VBZ # _exptl.entry_id 2VBZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 204.225 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description TRYPTOPHAN _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2VBZ _cell.length_a 100.974 _cell.length_b 100.974 _cell.length_c 99.284 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2VBZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 94 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 42 21 2' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C11 H12 N2 O2' _chem_comp.formula_weight 204.225 _chem_comp.id TRP _chem_comp.mon_nstd_flag y _chem_comp.name TRYPTOPHAN _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA TRP sing 282 n n N H TRP sing 283 n n N H2 TRP sing 284 n n CA C TRP sing 285 n n CA CB TRP sing 286 n n CA HA TRP sing 287 n n C O TRP doub 288 n n C OXT TRP sing 289 n n CB CG TRP sing 290 n n CB HB2 TRP sing 291 n n CB HB3 TRP sing 292 n n CG CD1 TRP doub 293 n y CG CD2 TRP sing 294 n y CD1 NE1 TRP sing 295 n y CD1 HD1 TRP sing 296 n n CD2 CE2 TRP doub 297 n y CD2 CE3 TRP sing 298 n y NE1 CE2 TRP sing 299 n y NE1 HE1 TRP sing 300 n n CE2 CZ2 TRP sing 301 n y CE3 CZ3 TRP doub 302 n y CE3 HE3 TRP sing 303 n n CZ2 CH2 TRP doub 304 n y CZ2 HZ2 TRP sing 305 n n CZ3 CH2 TRP sing 306 n y CZ3 HZ3 TRP sing 307 n n CH2 HH2 TRP sing 308 n n OXT HXT TRP sing 309 n n # _atom_sites.entry_id 2VBZ _atom_sites.fract_transf_matrix[1][1] 0.009904 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009904 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010072 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 TRP A 1 1151 1151 TRP TRP . D 3 HOH A 1 2001 2001 HOH HOH . D 3 HOH A 2 2002 2002 HOH HOH . D 3 HOH A 3 2003 2003 HOH HOH . D 3 HOH A 4 2004 2004 HOH HOH . D 3 HOH A 5 2005 2005 HOH HOH . D 3 HOH A 6 2006 2006 HOH HOH . D 3 HOH A 7 2007 2007 HOH HOH . D 3 HOH A 8 2008 2008 HOH HOH . D 3 HOH A 9 2009 2009 HOH HOH . D 3 HOH A 10 2010 2010 HOH HOH . D 3 HOH A 11 2011 2011 HOH HOH . D 3 HOH A 12 2012 2012 HOH HOH . D 3 HOH A 13 2013 2013 HOH HOH . D 3 HOH A 14 2014 2014 HOH HOH . D 3 HOH A 15 2015 2015 HOH HOH . D 3 HOH A 16 2016 2016 HOH HOH . D 3 HOH A 17 2017 2017 HOH HOH . D 3 HOH A 18 2018 2018 HOH HOH . D 3 HOH A 19 2019 2019 HOH HOH . D 3 HOH A 20 2020 2020 HOH HOH . D 3 HOH A 21 2021 2021 HOH HOH . D 3 HOH A 22 2022 2022 HOH HOH . D 3 HOH A 23 2023 2023 HOH HOH . E 3 HOH B 1 2001 2001 HOH HOH . E 3 HOH B 2 2002 2002 HOH HOH . E 3 HOH B 3 2003 2003 HOH HOH . E 3 HOH B 4 2004 2004 HOH HOH . E 3 HOH B 5 2005 2005 HOH HOH . E 3 HOH B 6 2006 2006 HOH HOH . E 3 HOH B 7 2007 2007 HOH HOH . E 3 HOH B 8 2008 2008 HOH HOH . E 3 HOH B 9 2009 2009 HOH HOH . E 3 HOH B 10 2010 2010 HOH HOH . E 3 HOH B 11 2011 2011 HOH HOH . E 3 HOH B 12 2012 2012 HOH HOH . E 3 HOH B 13 2013 2013 HOH HOH . E 3 HOH B 14 2014 2014 HOH HOH . E 3 HOH B 15 2015 2015 HOH HOH . E 3 HOH B 16 2016 2016 HOH HOH . E 3 HOH B 17 2017 2017 HOH HOH . E 3 HOH B 18 2018 2018 HOH HOH . E 3 HOH B 19 2019 2019 HOH HOH . E 3 HOH B 20 2020 2020 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N TRP . . . C 2 2.618 14.21 0.91 1 52.22 ? N TRP 1151 A 1 HETATM 2 C CA TRP . . . C 2 2.754 15.259 -0.128 1 52.14 ? CA TRP 1151 A 1 HETATM 3 C C TRP . . . C 2 3.64 14.732 -1.254 1 50.3 ? C TRP 1151 A 1 HETATM 4 O O TRP . . . C 2 4.445 13.846 -1.055 1 47.9 ? O TRP 1151 A 1 HETATM 5 C CB TRP . . . C 2 3.451 16.488 0.433 1 53.52 ? CB TRP 1151 A 1 HETATM 6 C CG TRP . . . C 2 2.755 17.294 1.438 1 60.48 ? CG TRP 1151 A 1 HETATM 7 C CD1 TRP . . . C 2 3.331 17.882 2.544 1 63.4 ? CD1 TRP 1151 A 1 HETATM 8 C CD2 TRP . . . C 2 1.344 17.652 1.471 1 69.7 ? CD2 TRP 1151 A 1 HETATM 9 N NE1 TRP . . . C 2 2.385 18.573 3.254 1 67.02 ? NE1 TRP 1151 A 1 HETATM 10 C CE2 TRP . . . C 2 1.157 18.474 2.631 1 69.2 ? CE2 TRP 1151 A 1 HETATM 11 C CE3 TRP . . . C 2 0.208 17.357 0.642 1 72.36 ? CE3 TRP 1151 A 1 HETATM 12 C CZ2 TRP . . . C 2 -0.132 19.045 2.982 1 67.94 ? CZ2 TRP 1151 A 1 HETATM 13 C CZ3 TRP . . . C 2 -1.112 17.922 1.019 1 69.9 ? CZ3 TRP 1151 A 1 HETATM 14 C CH2 TRP . . . C 2 -1.236 18.749 2.178 1 68.38 ? CH2 TRP 1151 A 1 HETATM 15 O OXT TRP . . . C 2 3.614 15.221 -2.388 1 49.93 ? OXT TRP 1151 A 1 # _model_server_stats.io_time_ms 61 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 341 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 15 #