data_2VDY # _model_server_result.job_id AclvVblGGg1zFaXCrA6how _model_server_result.datetime_utc '2024-11-23 04:50:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2vdy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1384}' # _entry.id 2VDY # _exptl.entry_id 2VDY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 362.46 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (11alpha,14beta)-11,17,21-trihydroxypregn-4-ene-3,20-dione _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 83.09 _cell.angle_beta 85.7 _cell.angle_gamma 69.42 _cell.entry_id 2VDY _cell.length_a 38.673 _cell.length_b 39.757 _cell.length_c 111.586 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2VDY _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS monomeric 1 author_and_software_defined_assembly 1 PQS monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C21 H30 O5' _chem_comp.formula_weight 362.46 _chem_comp.id HCY _chem_comp.mon_nstd_flag . _chem_comp.name (11alpha,14beta)-11,17,21-trihydroxypregn-4-ene-3,20-dione _chem_comp.type non-polymer _chem_comp.pdbx_synonyms CORTISOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C3 HCY doub 129 n n C3 C4 HCY sing 130 n n C3 C2 HCY sing 131 n n C4 C5 HCY doub 132 n n C5 C6 HCY sing 133 n n C5 C10 HCY sing 134 n n C6 C7 HCY sing 135 n n C7 C8 HCY sing 136 n n C2 C1 HCY sing 137 n n C1 C10 HCY sing 138 n n C10 C19 HCY sing 139 n n C10 C9 HCY sing 140 n n C9 C8 HCY sing 141 n n C9 C11 HCY sing 142 n n C8 C14 HCY sing 143 n n C11 O2 HCY sing 144 n n C11 C12 HCY sing 145 n n C12 C13 HCY sing 146 n n C13 C18 HCY sing 147 n n C13 C14 HCY sing 148 n n C13 C17 HCY sing 149 n n C14 C15 HCY sing 150 n n C15 C16 HCY sing 151 n n C16 C17 HCY sing 152 n n C17 O3 HCY sing 153 n n C17 C20 HCY sing 154 n n C20 O4 HCY doub 155 n n C20 C21 HCY sing 156 n n C21 O5 HCY sing 157 n n C4 H4 HCY sing 158 n n C2 H2C1 HCY sing 159 n n C2 H2C2 HCY sing 160 n n C6 H6C1 HCY sing 161 n n C6 H6C2 HCY sing 162 n n C7 H7C1 HCY sing 163 n n C7 H7C2 HCY sing 164 n n C8 H8 HCY sing 165 n n C1 H1C1 HCY sing 166 n n C1 H1C2 HCY sing 167 n n C19 H191 HCY sing 168 n n C19 H192 HCY sing 169 n n C19 H193 HCY sing 170 n n C9 H9 HCY sing 171 n n C11 H11 HCY sing 172 n n C14 H14 HCY sing 173 n n O2 H2 HCY sing 174 n n C12 H121 HCY sing 175 n n C12 H122 HCY sing 176 n n C18 H181 HCY sing 177 n n C18 H182 HCY sing 178 n n C18 H183 HCY sing 179 n n C15 H151 HCY sing 180 n n C15 H152 HCY sing 181 n n C16 H161 HCY sing 182 n n C16 H162 HCY sing 183 n n O3 H3 HCY sing 184 n n C21 H211 HCY sing 185 n n C21 H212 HCY sing 186 n n O5 H5 HCY sing 187 n n # _atom_sites.entry_id 2VDY _atom_sites.fract_transf_matrix[1][1] 0.025858 _atom_sites.fract_transf_matrix[1][2] -0.009709 _atom_sites.fract_transf_matrix[1][3] -0.000972 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.026867 _atom_sites.fract_transf_matrix[2][3] -0.002718 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009033 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HCY A 1 1384 1384 HCY HCY . D 2 HCY B 1 1384 1384 HCY HCY . E 3 HOH A 1 2001 2001 HOH HOH . E 3 HOH A 2 2002 2002 HOH HOH . E 3 HOH A 3 2003 2003 HOH HOH . E 3 HOH A 4 2004 2004 HOH HOH . E 3 HOH A 5 2005 2005 HOH HOH . E 3 HOH A 6 2006 2006 HOH HOH . E 3 HOH A 7 2007 2007 HOH HOH . E 3 HOH A 8 2008 2008 HOH HOH . E 3 HOH A 9 2009 2009 HOH HOH . E 3 HOH A 10 2010 2010 HOH HOH . E 3 HOH A 11 2011 2011 HOH HOH . E 3 HOH A 12 2012 2012 HOH HOH . E 3 HOH A 13 2013 2013 HOH HOH . E 3 HOH A 14 2014 2014 HOH HOH . E 3 HOH A 15 2015 2015 HOH HOH . E 3 HOH A 16 2016 2016 HOH HOH . E 3 HOH A 17 2017 2017 HOH HOH . E 3 HOH A 18 2018 2018 HOH HOH . E 3 HOH A 19 2019 2019 HOH HOH . E 3 HOH A 20 2020 2020 HOH HOH . E 3 HOH A 21 2021 2021 HOH HOH . E 3 HOH A 22 2022 2022 HOH HOH . E 3 HOH A 23 2023 2023 HOH HOH . E 3 HOH A 24 2024 2024 HOH HOH . E 3 HOH A 25 2025 2025 HOH HOH . E 3 HOH A 26 2026 2026 HOH HOH . E 3 HOH A 27 2027 2027 HOH HOH . E 3 HOH A 28 2028 2028 HOH HOH . E 3 HOH A 29 2029 2029 HOH HOH . E 3 HOH A 30 2030 2030 HOH HOH . E 3 HOH A 31 2031 2031 HOH HOH . E 3 HOH A 32 2032 2032 HOH HOH . E 3 HOH A 33 2033 2033 HOH HOH . E 3 HOH A 34 2034 2034 HOH HOH . E 3 HOH A 35 2035 2035 HOH HOH . E 3 HOH A 36 2036 2036 HOH HOH . E 3 HOH A 37 2037 2037 HOH HOH . E 3 HOH A 38 2038 2038 HOH HOH . E 3 HOH A 39 2039 2039 HOH HOH . E 3 HOH A 40 2040 2040 HOH HOH . E 3 HOH A 41 2041 2041 HOH HOH . E 3 HOH A 42 2042 2042 HOH HOH . E 3 HOH A 43 2043 2043 HOH HOH . E 3 HOH A 44 2044 2044 HOH HOH . E 3 HOH A 45 2045 2045 HOH HOH . E 3 HOH A 46 2046 2046 HOH HOH . E 3 HOH A 47 2047 2047 HOH HOH . E 3 HOH A 48 2048 2048 HOH HOH . E 3 HOH A 49 2049 2049 HOH HOH . E 3 HOH A 50 2050 2050 HOH HOH . E 3 HOH A 51 2051 2051 HOH HOH . E 3 HOH A 52 2052 2052 HOH HOH . E 3 HOH A 53 2053 2053 HOH HOH . E 3 HOH A 54 2054 2054 HOH HOH . E 3 HOH A 55 2055 2055 HOH HOH . E 3 HOH A 56 2056 2056 HOH HOH . E 3 HOH A 57 2057 2057 HOH HOH . E 3 HOH A 58 2058 2058 HOH HOH . E 3 HOH A 59 2059 2059 HOH HOH . E 3 HOH A 60 2060 2060 HOH HOH . E 3 HOH A 61 2061 2061 HOH HOH . E 3 HOH A 62 2062 2062 HOH HOH . E 3 HOH A 63 2063 2063 HOH HOH . E 3 HOH A 64 2064 2064 HOH HOH . E 3 HOH A 65 2065 2065 HOH HOH . E 3 HOH A 66 2066 2066 HOH HOH . E 3 HOH A 67 2067 2067 HOH HOH . E 3 HOH A 68 2068 2068 HOH HOH . E 3 HOH A 69 2069 2069 HOH HOH . E 3 HOH A 70 2070 2070 HOH HOH . E 3 HOH A 71 2071 2071 HOH HOH . E 3 HOH A 72 2072 2072 HOH HOH . E 3 HOH A 73 2073 2073 HOH HOH . E 3 HOH A 74 2074 2074 HOH HOH . E 3 HOH A 75 2075 2075 HOH HOH . E 3 HOH A 76 2076 2076 HOH HOH . E 3 HOH A 77 2077 2077 HOH HOH . E 3 HOH A 78 2078 2078 HOH HOH . E 3 HOH A 79 2079 2079 HOH HOH . E 3 HOH A 80 2080 2080 HOH HOH . E 3 HOH A 81 2081 2081 HOH HOH . E 3 HOH A 82 2082 2082 HOH HOH . E 3 HOH A 83 2083 2083 HOH HOH . E 3 HOH A 84 2084 2084 HOH HOH . E 3 HOH A 85 2085 2085 HOH HOH . E 3 HOH A 86 2086 2086 HOH HOH . E 3 HOH A 87 2087 2087 HOH HOH . E 3 HOH A 88 2088 2088 HOH HOH . E 3 HOH A 89 2089 2089 HOH HOH . E 3 HOH A 90 2090 2090 HOH HOH . E 3 HOH A 91 2091 2091 HOH HOH . E 3 HOH A 92 2092 2092 HOH HOH . E 3 HOH A 93 2093 2093 HOH HOH . E 3 HOH A 94 2094 2094 HOH HOH . E 3 HOH A 95 2095 2095 HOH HOH . E 3 HOH A 96 2096 2096 HOH HOH . E 3 HOH A 97 2097 2097 HOH HOH . E 3 HOH A 98 2098 2098 HOH HOH . E 3 HOH A 99 2099 2099 HOH HOH . E 3 HOH A 100 2100 2100 HOH HOH . E 3 HOH A 101 2101 2101 HOH HOH . E 3 HOH A 102 2102 2102 HOH HOH . E 3 HOH A 103 2103 2103 HOH HOH . E 3 HOH A 104 2104 2104 HOH HOH . E 3 HOH A 105 2105 2105 HOH HOH . E 3 HOH A 106 2106 2106 HOH HOH . E 3 HOH A 107 2107 2107 HOH HOH . E 3 HOH A 108 2108 2108 HOH HOH . E 3 HOH A 109 2109 2109 HOH HOH . F 3 HOH B 1 2001 2001 HOH HOH . F 3 HOH B 2 2002 2002 HOH HOH . F 3 HOH B 3 2003 2003 HOH HOH . F 3 HOH B 4 2004 2004 HOH HOH . F 3 HOH B 5 2005 2005 HOH HOH . F 3 HOH B 6 2006 2006 HOH HOH . F 3 HOH B 7 2007 2007 HOH HOH . F 3 HOH B 8 2008 2008 HOH HOH . F 3 HOH B 9 2009 2009 HOH HOH . F 3 HOH B 10 2010 2010 HOH HOH . F 3 HOH B 11 2011 2011 HOH HOH . F 3 HOH B 12 2012 2012 HOH HOH . F 3 HOH B 13 2013 2013 HOH HOH . F 3 HOH B 14 2014 2014 HOH HOH . F 3 HOH B 15 2015 2015 HOH HOH . F 3 HOH B 16 2016 2016 HOH HOH . F 3 HOH B 17 2017 2017 HOH HOH . F 3 HOH B 18 2018 2018 HOH HOH . F 3 HOH B 19 2019 2019 HOH HOH . F 3 HOH B 20 2020 2020 HOH HOH . F 3 HOH B 21 2021 2021 HOH HOH . F 3 HOH B 22 2022 2022 HOH HOH . F 3 HOH B 23 2023 2023 HOH HOH . F 3 HOH B 24 2024 2024 HOH HOH . F 3 HOH B 25 2025 2025 HOH HOH . F 3 HOH B 26 2026 2026 HOH HOH . F 3 HOH B 27 2027 2027 HOH HOH . F 3 HOH B 28 2028 2028 HOH HOH . F 3 HOH B 29 2029 2029 HOH HOH . F 3 HOH B 30 2030 2030 HOH HOH . F 3 HOH B 31 2031 2031 HOH HOH . F 3 HOH B 32 2032 2032 HOH HOH . F 3 HOH B 33 2033 2033 HOH HOH . F 3 HOH B 34 2034 2034 HOH HOH . F 3 HOH B 35 2035 2035 HOH HOH . F 3 HOH B 36 2036 2036 HOH HOH . F 3 HOH B 37 2037 2037 HOH HOH . F 3 HOH B 38 2038 2038 HOH HOH . F 3 HOH B 39 2039 2039 HOH HOH . F 3 HOH B 40 2040 2040 HOH HOH . F 3 HOH B 41 2041 2041 HOH HOH . F 3 HOH B 42 2042 2042 HOH HOH . F 3 HOH B 43 2043 2043 HOH HOH . F 3 HOH B 44 2044 2044 HOH HOH . F 3 HOH B 45 2045 2045 HOH HOH . F 3 HOH B 46 2046 2046 HOH HOH . F 3 HOH B 47 2047 2047 HOH HOH . F 3 HOH B 48 2048 2048 HOH HOH . F 3 HOH B 49 2049 2049 HOH HOH . F 3 HOH B 50 2050 2050 HOH HOH . F 3 HOH B 51 2051 2051 HOH HOH . F 3 HOH B 52 2052 2052 HOH HOH . F 3 HOH B 53 2053 2053 HOH HOH . F 3 HOH B 54 2054 2054 HOH HOH . F 3 HOH B 55 2055 2055 HOH HOH . F 3 HOH B 56 2056 2056 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 HCY . . . D 2 -24.976 -0.778 15.581 1 68.54 ? C1 HCY 1384 B 1 HETATM 2 C C2 HCY . . . D 2 -24.526 -1.706 14.453 1 68.53 ? C2 HCY 1384 B 1 HETATM 3 C C3 HCY . . . D 2 -23.376 -1.06 13.72 1 68.48 ? C3 HCY 1384 B 1 HETATM 4 C C4 HCY . . . D 2 -22.451 -0.181 14.461 1 68.55 ? C4 HCY 1384 B 1 HETATM 5 C C5 HCY . . . D 2 -22.602 0.046 15.78 1 68.61 ? C5 HCY 1384 B 1 HETATM 6 C C6 HCY . . . D 2 -21.467 0.722 16.519 1 68.6 ? C6 HCY 1384 B 1 HETATM 7 C C7 HCY . . . D 2 -21.993 1.951 17.253 1 68.52 ? C7 HCY 1384 B 1 HETATM 8 C C8 HCY . . . D 2 -23.242 1.667 18.089 1 68.71 ? C8 HCY 1384 B 1 HETATM 9 C C9 HCY . . . D 2 -24.344 0.909 17.312 1 68.77 ? C9 HCY 1384 B 1 HETATM 10 C C10 HCY . . . D 2 -23.859 -0.347 16.546 1 68.67 ? C10 HCY 1384 B 1 HETATM 11 C C12 HCY . . . D 2 -26.132 2.023 18.836 1 68.89 ? C12 HCY 1384 B 1 HETATM 12 C C11 HCY . . . D 2 -25.646 0.734 18.144 1 68.87 ? C11 HCY 1384 B 1 HETATM 13 C C13 HCY . . . D 2 -25.022 2.8 19.561 1 68.89 ? C13 HCY 1384 B 1 HETATM 14 C C14 HCY . . . D 2 -23.876 2.976 18.572 1 68.86 ? C14 HCY 1384 B 1 HETATM 15 C C15 HCY . . . D 2 -23.004 4.083 19.165 1 68.76 ? C15 HCY 1384 B 1 HETATM 16 C C16 HCY . . . D 2 -24.015 4.985 19.879 1 68.79 ? C16 HCY 1384 B 1 HETATM 17 C C17 HCY . . . D 2 -25.37 4.26 19.874 1 68.9 ? C17 HCY 1384 B 1 HETATM 18 C C18 HCY . . . D 2 -24.605 2.036 20.824 1 68.88 ? C18 HCY 1384 B 1 HETATM 19 C C19 HCY . . . D 2 -23.504 -1.534 17.448 1 68.62 ? C19 HCY 1384 B 1 HETATM 20 C C20 HCY . . . D 2 -26.121 4.456 21.181 1 68.98 ? C20 HCY 1384 B 1 HETATM 21 C C21 HCY . . . D 2 -27.626 4.294 21.235 1 69.02 ? C21 HCY 1384 B 1 HETATM 22 O O1 HCY . . . D 2 -23.216 -1.261 12.528 1 68.36 ? O1 HCY 1384 B 1 HETATM 23 O O2 HCY . . . D 2 -25.519 -0.303 19.128 1 68.96 ? O2 HCY 1384 B 1 HETATM 24 O O3 HCY . . . D 2 -26.141 4.831 18.805 1 68.81 ? O3 HCY 1384 B 1 HETATM 25 O O4 HCY . . . D 2 -25.53 4.757 22.208 1 68.97 ? O4 HCY 1384 B 1 HETATM 26 O O5 HCY . . . D 2 -27.997 3.531 22.39 1 69.09 ? O5 HCY 1384 B 1 # _model_server_stats.io_time_ms 45 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 264 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 26 #