data_2VEA # _model_server_result.job_id JhpO7ZPLuZAeZYw_B_oDbw _model_server_result.datetime_utc '2025-01-05 08:40:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2vea # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1521}' # _entry.id 2VEA # _exptl.entry_id 2VEA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 588.694 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description PHYCOCYANOBILIN _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2VEA _cell.length_a 77.18 _cell.length_b 77.18 _cell.length_c 249 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2VEA _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 259 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 259 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id CAC _struct_conn.ptnr2_label_comp_id CYC _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYC _struct_conn.ptnr2_auth_seq_id 1521 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.607 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C33 H40 N4 O6' _chem_comp.formula_weight 588.694 _chem_comp.id CYC _chem_comp.mon_nstd_flag . _chem_comp.name PHYCOCYANOBILIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A CYC doub 70 z n CHA C4D CYC sing 71 n n CHA HHA CYC sing 72 n n NA C1A CYC sing 73 n n NA C4A CYC doub 74 n n C1A C2A CYC sing 75 n n C2A C3A CYC doub 76 n n C2A CAA CYC sing 77 n n C3A C4A CYC sing 78 n n C3A CMA CYC sing 79 n n C4A CHB CYC sing 80 n n CMA HMA1 CYC sing 81 n n CMA HMA2 CYC sing 82 n n CMA HMA3 CYC sing 83 n n CAA CBA CYC sing 84 n n CAA HAA1 CYC sing 85 n n CAA HAA2 CYC sing 86 n n CBA CGA CYC sing 87 n n CBA HBA1 CYC sing 88 n n CBA HBA2 CYC sing 89 n n CGA O1A CYC doub 90 n n CGA O2A CYC sing 91 n n O2A H2A CYC sing 92 n n CHB C1B CYC doub 93 z n CHB HHB CYC sing 94 n n NB C1B CYC sing 95 n n NB C4B CYC sing 96 n n NB HB CYC sing 97 n n C1B C2B CYC sing 98 n n C2B C3B CYC doub 99 n n C2B CMB CYC sing 100 n n C3B C4B CYC sing 101 n n C3B CAB CYC sing 102 n n C4B OB CYC doub 103 n n CMB HMB1 CYC sing 104 n n CMB HMB2 CYC sing 105 n n CMB HMB3 CYC sing 106 n n CAB CBB CYC sing 107 n n CAB HAB1 CYC sing 108 n n CAB HAB2 CYC sing 109 n n CBB HBB1 CYC sing 110 n n CBB HBB2 CYC sing 111 n n CBB HBB3 CYC sing 112 n n NC C1C CYC sing 113 n n NC C4C CYC sing 114 n n NC HC CYC sing 115 n n C1C C2C CYC sing 116 n n C1C OC CYC doub 117 n n C2C C3C CYC sing 118 n n C2C CMC CYC sing 119 n n C2C H2C CYC sing 120 n n C3C C4C CYC sing 121 n n C3C CAC CYC sing 122 n n C3C H3C CYC sing 123 n n C4C CHD CYC doub 124 z n CMC HMC1 CYC sing 125 n n CMC HMC2 CYC sing 126 n n CMC HMC3 CYC sing 127 n n CAC CBC CYC sing 128 n n CAC HAC1 CYC sing 129 n n CAC HAC2 CYC sing 130 n n CBC HBC1 CYC sing 131 n n CBC HBC2 CYC sing 132 n n CBC HBC3 CYC sing 133 n n CHD C1D CYC sing 134 n n CHD HHD CYC sing 135 n n ND C1D CYC sing 136 n y ND C4D CYC sing 137 n y ND HD CYC sing 138 n n C1D C2D CYC doub 139 n y C2D C3D CYC sing 140 n y C2D CMD CYC sing 141 n n C3D C4D CYC doub 142 n y C3D CAD CYC sing 143 n n CMD HMD1 CYC sing 144 n n CMD HMD2 CYC sing 145 n n CMD HMD3 CYC sing 146 n n CAD CBD CYC sing 147 n n CAD HAD1 CYC sing 148 n n CAD HAD2 CYC sing 149 n n CBD CGD CYC sing 150 n n CBD HBD1 CYC sing 151 n n CBD HBD2 CYC sing 152 n n CGD O1D CYC doub 153 n n CGD O2D CYC sing 154 n n O2D H2D CYC sing 155 n n # _atom_sites.entry_id 2VEA _atom_sites.fract_transf_matrix[1][1] 0.012957 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012957 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004016 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CYC A 1 1521 1521 CYC CYC . C 3 HOH A 1 2001 2001 HOH HOH . C 3 HOH A 2 2002 2002 HOH HOH . C 3 HOH A 3 2003 2003 HOH HOH . C 3 HOH A 4 2004 2004 HOH HOH . C 3 HOH A 5 2005 2005 HOH HOH . C 3 HOH A 6 2006 2006 HOH HOH . C 3 HOH A 7 2007 2007 HOH HOH . C 3 HOH A 8 2008 2008 HOH HOH . C 3 HOH A 9 2009 2009 HOH HOH . C 3 HOH A 10 2010 2010 HOH HOH . C 3 HOH A 11 2011 2011 HOH HOH . C 3 HOH A 12 2012 2012 HOH HOH . C 3 HOH A 13 2013 2013 HOH HOH . C 3 HOH A 14 2014 2014 HOH HOH . C 3 HOH A 15 2015 2015 HOH HOH . C 3 HOH A 16 2016 2016 HOH HOH . C 3 HOH A 17 2017 2017 HOH HOH . C 3 HOH A 18 2018 2018 HOH HOH . C 3 HOH A 19 2019 2019 HOH HOH . C 3 HOH A 20 2020 2020 HOH HOH . C 3 HOH A 21 2021 2021 HOH HOH . C 3 HOH A 22 2022 2022 HOH HOH . C 3 HOH A 23 2023 2023 HOH HOH . C 3 HOH A 24 2024 2024 HOH HOH . C 3 HOH A 25 2025 2025 HOH HOH . C 3 HOH A 26 2026 2026 HOH HOH . C 3 HOH A 27 2027 2027 HOH HOH . C 3 HOH A 28 2028 2028 HOH HOH . C 3 HOH A 29 2029 2029 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA CYC . . . B 2 -33.437 -1.15 -0.265 1 76.18 ? CHA CYC 1521 A 1 HETATM 2 N NA CYC . . . B 2 -35.299 -2.31 -1.481 1 76.78 ? NA CYC 1521 A 1 HETATM 3 C C1A CYC . . . B 2 -34.402 -2.235 -0.493 1 76.16 ? C1A CYC 1521 A 1 HETATM 4 C C2A CYC . . . B 2 -34.453 -3.372 0.443 1 76.33 ? C2A CYC 1521 A 1 HETATM 5 C C3A CYC . . . B 2 -35.532 -4.211 -0.126 1 75.93 ? C3A CYC 1521 A 1 HETATM 6 C C4A CYC . . . B 2 -35.967 -3.468 -1.229 1 76.41 ? C4A CYC 1521 A 1 HETATM 7 C CMA CYC . . . B 2 -36.044 -5.532 0.383 1 75.81 ? CMA CYC 1521 A 1 HETATM 8 C CAA CYC . . . B 2 -33.536 -3.527 1.637 1 76.84 ? CAA CYC 1521 A 1 HETATM 9 C CBA CYC . . . B 2 -34.078 -4.388 2.753 1 77.73 ? CBA CYC 1521 A 1 HETATM 10 C CGA CYC . . . B 2 -34.683 -3.481 3.766 1 78.75 ? CGA CYC 1521 A 1 HETATM 11 O O1A CYC . . . B 2 -33.951 -2.601 4.262 1 78.74 ? O1A CYC 1521 A 1 HETATM 12 O O2A CYC . . . B 2 -35.884 -3.663 4.048 1 80.66 ? O2A CYC 1521 A 1 HETATM 13 C CHB CYC . . . B 2 -37.17 -3.684 -2.071 1 76.65 ? CHB CYC 1521 A 1 HETATM 14 N NB CYC . . . B 2 -38.662 -5.097 -0.621 1 76.71 ? NB CYC 1521 A 1 HETATM 15 C C1B CYC . . . B 2 -38.398 -4.457 -1.781 1 76.34 ? C1B CYC 1521 A 1 HETATM 16 C C2B CYC . . . B 2 -39.422 -4.599 -2.695 1 76.59 ? C2B CYC 1521 A 1 HETATM 17 C C3B CYC . . . B 2 -40.417 -5.371 -2.131 1 76.71 ? C3B CYC 1521 A 1 HETATM 18 C C4B CYC . . . B 2 -39.882 -5.639 -0.876 1 76.83 ? C4B CYC 1521 A 1 HETATM 19 C CMB CYC . . . B 2 -39.458 -4.023 -4.06 1 76.62 ? CMB CYC 1521 A 1 HETATM 20 C CAB CYC . . . B 2 -41.725 -5.774 -2.773 1 76.47 ? CAB CYC 1521 A 1 HETATM 21 C CBB CYC . . . B 2 -42.772 -6.065 -1.737 1 77.62 ? CBB CYC 1521 A 1 HETATM 22 O OB CYC . . . B 2 -40.607 -6.451 0.126 1 77.1 ? OB CYC 1521 A 1 HETATM 23 N NC CYC . . . B 2 -35.196 2.23 -4.148 1 78.06 ? NC CYC 1521 A 1 HETATM 24 C C1C CYC . . . B 2 -36.02 2.617 -5.03 1 78.31 ? C1C CYC 1521 A 1 HETATM 25 C C2C CYC . . . B 2 -35.562 3.839 -5.763 1 77.73 ? C2C CYC 1521 A 1 HETATM 26 C C3C CYC . . . B 2 -34.291 4.197 -5.019 1 77.56 ? C3C CYC 1521 A 1 HETATM 27 C C4C CYC . . . B 2 -34.161 3.058 -4.058 1 77.23 ? C4C CYC 1521 A 1 HETATM 28 C CMC CYC . . . B 2 -35.302 3.542 -7.229 1 77.87 ? CMC CYC 1521 A 1 HETATM 29 C CAC CYC . . . B 2 -34.395 5.507 -4.26 1 78.35 ? CAC CYC 1521 A 1 HETATM 30 C CBC CYC . . . B 2 -34.697 6.697 -5.154 1 77.97 ? CBC CYC 1521 A 1 HETATM 31 O OC CYC . . . B 2 -37.177 2.015 -5.288 1 78.61 ? OC CYC 1521 A 1 HETATM 32 C CHD CYC . . . B 2 -33.083 2.9 -3.268 1 76.24 ? CHD CYC 1521 A 1 HETATM 33 N ND CYC . . . B 2 -33.592 0.714 -2.041 1 75.9 ? ND CYC 1521 A 1 HETATM 34 C C1D CYC . . . B 2 -32.855 1.856 -2.224 1 76.45 ? C1D CYC 1521 A 1 HETATM 35 C C2D CYC . . . B 2 -31.801 2.067 -1.194 1 76.24 ? C2D CYC 1521 A 1 HETATM 36 C C3D CYC . . . B 2 -31.943 0.852 -0.377 1 75.52 ? C3D CYC 1521 A 1 HETATM 37 C C4D CYC . . . B 2 -33.075 0.117 -0.945 1 75.94 ? C4D CYC 1521 A 1 HETATM 38 C CMD CYC . . . B 2 -30.819 3.201 -1.086 1 76.03 ? CMD CYC 1521 A 1 HETATM 39 C CAD CYC . . . B 2 -31.286 0.453 0.888 1 75.52 ? CAD CYC 1521 A 1 HETATM 40 C CBD CYC . . . B 2 -30.656 1.351 1.624 1 74.9 ? CBD CYC 1521 A 1 HETATM 41 C CGD CYC . . . B 2 -30.084 0.989 2.925 1 73.65 ? CGD CYC 1521 A 1 HETATM 42 O O1D CYC . . . B 2 -29.467 1.9 3.517 1 73.11 ? O1D CYC 1521 A 1 HETATM 43 O O2D CYC . . . B 2 -30.241 -0.162 3.393 1 71.05 ? O2D CYC 1521 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 43 #