data_2VER # _model_server_result.job_id rwQP4esE9JR2dUIFZSpGjg _model_server_result.datetime_utc '2024-11-05 01:25:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2ver # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1113}' # _entry.id 2VER # _exptl.entry_id 2VER _exptl.method 'SOLUTION NMR' # _entity.details ? _entity.formula_weight 264.385 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'S-[(1-oxyl-2,2,5,5-tetramethyl-2,5-dihydro-1H-pyrrol-3-yl)methyl] methanesulfonothioate' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2VER _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2VER _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 3 A CYS 3 1_555 A SG CYS 35 A CYS 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? covale ? covale1 B SG CYS 39 N CYS 39 1_555 C S1 MTN . N MTN 1111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? covale ? covale2 B SG CYS 43 N CYS 43 1_555 D S1 MTN . N MTN 1112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? covale ? covale3 B SG CYS 54 N CYS 54 1_555 E S1 MTN . N MTN 1113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? # _chem_comp.formula 'C10 H18 N O3 S2' _chem_comp.formula_weight 264.385 _chem_comp.id MTN _chem_comp.mon_nstd_flag . _chem_comp.name 'S-[(1-oxyl-2,2,5,5-tetramethyl-2,5-dihydro-1H-pyrrol-3-yl)methyl] methanesulfonothioate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms MTSL # _atom_sites.entry_id 2VER _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MTN N 1 1111 1111 MTN MTN . D 3 MTN N 1 1112 1112 MTN MTN . E 3 MTN N 1 1113 1113 MTN MTN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 MTN . . . E 3 -3.721 -4.476 -15.17 1 2 ? O1 MTN 1113 N 1 HETATM 2 N N1 MTN . . . E 3 -2.848 -3.555 -15.119 1 1.88 ? N1 MTN 1113 N 1 HETATM 3 C C1 MTN . . . E 3 -2.454 -2.754 -16.298 1 2.42 ? C1 MTN 1113 N 1 HETATM 4 C C2 MTN . . . E 3 -1.423 -1.882 -15.683 1 2.25 ? C2 MTN 1113 N 1 HETATM 5 C C3 MTN . . . E 3 -1.236 -2.104 -14.396 1 1.84 ? C3 MTN 1113 N 1 HETATM 6 C C4 MTN . . . E 3 -0.258 -1.369 -13.538 1 2.01 ? C4 MTN 1113 N 1 HETATM 7 S S1 MTN . . . E 3 1.185 -0.696 -14.431 1 1.95 ? S1 MTN 1113 N 1 HETATM 8 C C5 MTN . . . E 3 -2.129 -3.201 -13.859 1 2.02 ? C5 MTN 1113 N 1 HETATM 9 C C6 MTN . . . E 3 -1.364 -4.348 -13.207 1 2.9 ? C6 MTN 1113 N 1 HETATM 10 C C7 MTN . . . E 3 -3.137 -2.602 -12.878 1 2.7 ? C7 MTN 1113 N 1 HETATM 11 C C8 MTN . . . E 3 -3.634 -1.921 -16.771 1 3.13 ? C8 MTN 1113 N 1 HETATM 12 C C9 MTN . . . E 3 -1.882 -3.601 -17.435 1 3.33 ? C9 MTN 1113 N 1 HETATM 13 H H2 MTN . . . E 3 -0.877 -1.134 -16.237 1 2.8 ? H2 MTN 1113 N 1 HETATM 14 H H41 MTN . . . E 3 0.114 -2.046 -12.787 1 2.53 ? H41 MTN 1113 N 1 HETATM 15 H H42 MTN . . . E 3 -0.779 -0.548 -13.064 1 2.42 ? H42 MTN 1113 N 1 HETATM 16 H H61 MTN . . . E 3 -1.13 -4.09 -12.185 1 3.35 ? H61 MTN 1113 N 1 HETATM 17 H H62 MTN . . . E 3 -0.449 -4.526 -13.75 1 3.34 ? H62 MTN 1113 N 1 HETATM 18 H H63 MTN . . . E 3 -1.971 -5.24 -13.221 1 3.32 ? H63 MTN 1113 N 1 HETATM 19 H H71 MTN . . . E 3 -3.914 -3.324 -12.67 1 3.12 ? H71 MTN 1113 N 1 HETATM 20 H H72 MTN . . . E 3 -2.635 -2.341 -11.958 1 3.14 ? H72 MTN 1113 N 1 HETATM 21 H H73 MTN . . . E 3 -3.579 -1.715 -13.309 1 3.12 ? H73 MTN 1113 N 1 HETATM 22 H H81 MTN . . . E 3 -3.97 -1.283 -15.967 1 3.52 ? H81 MTN 1113 N 1 HETATM 23 H H82 MTN . . . E 3 -4.439 -2.575 -17.07 1 3.5 ? H82 MTN 1113 N 1 HETATM 24 H H83 MTN . . . E 3 -3.333 -1.311 -17.61 1 3.54 ? H83 MTN 1113 N 1 HETATM 25 H H91 MTN . . . E 3 -1.193 -3.007 -18.015 1 3.76 ? H91 MTN 1113 N 1 HETATM 26 H H92 MTN . . . E 3 -2.686 -3.942 -18.07 1 3.75 ? H92 MTN 1113 N 1 HETATM 27 H H93 MTN . . . E 3 -1.364 -4.454 -17.026 1 3.7 ? H93 MTN 1113 N 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 216 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 27 #