data_2VF5
#
_model_server_result.job_id            Tj7lDHO49_ElCu_PSLw5ag 
_model_server_result.datetime_utc      '2025-07-13 23:00:50' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2vf5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":609}' 
#
_entry.id    2VF5 
#
_exptl.entry_id    2VF5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              259.151 
_entity.id                          2 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-amino-2-deoxy-6-O-phosphono-alpha-D-glucopyranose 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            2VF5 
_cell.length_a            144.762 
_cell.length_b            144.762 
_cell.length_c            171.447 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2VF5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        155 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'H 3 2' 
#
_pdbx_struct_assembly.method_details        PQS 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C6 H14 N O8 P' 
_chem_comp.formula_weight    259.151 
_chem_comp.id                GLP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              2-amino-2-deoxy-6-O-phosphono-alpha-D-glucopyranose 
_chem_comp.type              'd-saccharide, alpha linking' 
_chem_comp.pdbx_synonyms     'GLUCOSAMINE 6-PHOSPHATE;6-O-phosphono-alpha-D-glucosamine;2-amino-2-deoxy-6-O-phosphono-alpha-D-glucose;2-amino-2-deoxy-6-O-phosphono-D-glucose;2-amino-2-deoxy-6-O-phosphono-glucose' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 GLP sing 102 n n 
C1 O1 GLP sing 103 n n 
C1 O5 GLP sing 104 n n 
C1 H1 GLP sing 105 n n 
C2 C3 GLP sing 106 n n 
C2 N2 GLP sing 107 n n 
C2 H2 GLP sing 108 n n 
C3 C4 GLP sing 109 n n 
C3 O3 GLP sing 110 n n 
C3 H3 GLP sing 111 n n 
C4 C5 GLP sing 112 n n 
C4 O4 GLP sing 113 n n 
C4 H4 GLP sing 114 n n 
C5 C6 GLP sing 115 n n 
C5 O5 GLP sing 116 n n 
C5 H5 GLP sing 117 n n 
C6 O6 GLP sing 118 n n 
C6 H61 GLP sing 119 n n 
C6 H62 GLP sing 120 n n 
O1 HO1 GLP sing 121 n n 
N2 HN21 GLP sing 122 n n 
N2 HN22 GLP sing 123 n n 
O3 HO3 GLP sing 124 n n 
O4 HO4 GLP sing 125 n n 
O6 P GLP sing 126 n n 
P O1P GLP doub 127 n n 
P O2P GLP sing 128 n n 
P O3P GLP sing 129 n n 
O2P HOP2 GLP sing 130 n n 
O3P HOP3 GLP sing 131 n n 
#
_pdbx_chem_comp_identifier.comp_id            GLP 
_pdbx_chem_comp_identifier.identifier         a-D-GlcpN6PO3 
_pdbx_chem_comp_identifier.type               'IUPAC CARBOHYDRATE SYMBOL' 
_pdbx_chem_comp_identifier.program            PDB-CARE 
_pdbx_chem_comp_identifier.program_version    1 
#
_atom_sites.entry_id                     2VF5 
_atom_sites.fract_transf_matrix[1][1]    0.006908 
_atom_sites.fract_transf_matrix[1][2]    0.003988 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007977 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005833 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 GLP X 1 609 609 GLP GLP . 
C 3 HOH X 1 2001 2001 HOH HOH . 
C 3 HOH X 2 2002 2002 HOH HOH . 
C 3 HOH X 3 2003 2003 HOH HOH . 
C 3 HOH X 4 2004 2004 HOH HOH . 
C 3 HOH X 5 2005 2005 HOH HOH . 
C 3 HOH X 6 2006 2006 HOH HOH . 
C 3 HOH X 7 2007 2007 HOH HOH . 
C 3 HOH X 8 2008 2008 HOH HOH . 
C 3 HOH X 9 2009 2009 HOH HOH . 
C 3 HOH X 10 2010 2010 HOH HOH . 
C 3 HOH X 11 2011 2011 HOH HOH . 
C 3 HOH X 12 2012 2012 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GLP . . . B 2 28.738 16.332 -4.367 1 27.32 ? C1 GLP 609 X 1 
HETATM 2 C C2 GLP . . . B 2 28.951 15.557 -3.11 1 26.62 ? C2 GLP 609 X 1 
HETATM 3 C C3 GLP . . . B 2 28.714 16.273 -1.805 1 27.6 ? C3 GLP 609 X 1 
HETATM 4 C C4 GLP . . . B 2 28.918 17.793 -1.718 1 27.22 ? C4 GLP 609 X 1 
HETATM 5 C C5 GLP . . . B 2 28.756 18.525 -3.034 1 26.2 ? C5 GLP 609 X 1 
HETATM 6 C C6 GLP . . . B 2 29.789 19.624 -3.296 1 24.71 ? C6 GLP 609 X 1 
HETATM 7 O O1 GLP . . . B 2 27.467 15.97 -4.909 1 26.65 ? O1 GLP 609 X 1 
HETATM 8 N N2 GLP . . . B 2 28.412 14.241 -3.229 1 27.63 ? N2 GLP 609 X 1 
HETATM 9 O O3 GLP . . . B 2 28.995 15.386 -0.695 1 30.85 ? O3 GLP 609 X 1 
HETATM 10 O O4 GLP . . . B 2 28.148 18.501 -0.77 1 28.21 ? O4 GLP 609 X 1 
HETATM 11 O O5 GLP . . . B 2 28.731 17.738 -4.212 1 28.97 ? O5 GLP 609 X 1 
HETATM 12 O O6 GLP . . . B 2 31.068 19.112 -3.654 1 23.13 ? O6 GLP 609 X 1 
HETATM 13 P P GLP . . . B 2 32.417 19.895 -3.191 1 19.97 ? P GLP 609 X 1 
HETATM 14 O O1P GLP . . . B 2 32.406 20.17 -1.624 1 17.16 ? O1P GLP 609 X 1 
HETATM 15 O O2P GLP . . . B 2 33.53 18.848 -3.613 1 18.19 ? O2P GLP 609 X 1 
HETATM 16 O O3P GLP . . . B 2 32.471 21.315 -3.941 1 17.62 ? O3P GLP 609 X 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           327 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           16 
#