data_2VGC
#
_model_server_result.job_id            EILCbEL4HtjtKS-CG7PYjA 
_model_server_result.datetime_utc      '2025-03-03 13:14:23' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2vgc 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":358}' 
#
_entry.id    2VGC 
#
_exptl.entry_id    2VGC 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              258.486 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'D-1-(4-CHLOROPHENYL)-2-(ACETAMIDO)ETHANE BORONIC ACID' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2VGC 
_cell.length_a            69.689 
_cell.length_b            69.689 
_cell.length_c            96.787 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2VGC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        94 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 42 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA trimeric 3 author_and_software_defined_assembly 1 
PISA hexameric 6 software_defined_assembly 2 
PISA hexameric 6 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H,I 1 1 
A,B,C,D,E,F,G,H,I 2 1,2 
A,G 3 3,4 
B,C,D,E,F,H,I 3 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 69.689 0 0 
3 'crystal symmetry operation' 5_545 -x+1/2,y-1/2,-z+1/2 -1 0 0 0 1 0 0 0 -1 34.8445 -34.8445 48.3935 
4 'crystal symmetry operation' 6_555 x+1/2,-y+1/2,-z+1/2 1 0 0 0 -1 0 0 0 -1 34.8445 34.8445 48.3935 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             F 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 1 A CYS 1 1_555 B SG CYS 107 B CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf2 B SG CYS 27 B CYS 42 1_555 B SG CYS 43 B CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? 
disulf ? disulf3 B SG CYS 121 B CYS 136 1_555 C SG CYS 53 C CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? 
disulf ? disulf4 C SG CYS 20 C CYS 168 1_555 C SG CYS 34 C CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? 
disulf ? disulf5 C SG CYS 43 C CYS 191 1_555 C SG CYS 72 C CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.244 ? 
covale ? covale1 B NE2 HIS 42 B HIS 57 1_555 F B V35 . C V35 358 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.701 ? 
covale ? covale2 C OG SER 47 C SER 195 1_555 F B V35 . C V35 358 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.458 ? 
#
_chem_comp.formula           'C10 H14 B Cl N O4 -1' 
_chem_comp.formula_weight    258.486 
_chem_comp.id                V35 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'D-1-(4-CHLOROPHENYL)-2-(ACETAMIDO)ETHANE BORONIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'D-PARA-CHLORO-1-ACETAMIDO BORONIC ACID' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 V35 doub 362 n y 
C1 C6 V35 sing 363 n y 
C1 C7 V35 sing 364 n n 
C2 C3 V35 sing 365 n y 
C2 H2 V35 sing 366 n n 
C3 C4 V35 doub 367 n y 
C3 H3 V35 sing 368 n n 
C4 C5 V35 sing 369 n y 
C4 CL4 V35 sing 370 n n 
C5 C6 V35 doub 371 n y 
C5 H5 V35 sing 372 n n 
C6 H6 V35 sing 373 n n 
C7 C8 V35 sing 374 n n 
C7 H71 V35 sing 375 n n 
C7 H72 V35 sing 376 n n 
C8 N V35 sing 377 n n 
C8 B V35 sing 378 n n 
C8 H8 V35 sing 379 n n 
C9 C V35 sing 380 n n 
C9 H91 V35 sing 381 n n 
C9 H92 V35 sing 382 n n 
C9 H93 V35 sing 383 n n 
C N V35 sing 384 n n 
C O V35 doub 385 n n 
N HN V35 sing 386 n n 
O1B B V35 sing 387 n n 
O1B HOB1 V35 sing 388 n n 
O2B B V35 sing 389 n n 
O2B HOB2 V35 sing 390 n n 
O3B B V35 sing 391 n n 
O3B HOB3 V35 sing 392 n n 
#
_atom_sites.entry_id                     2VGC 
_atom_sites.fract_transf_matrix[1][1]    0.014349 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014349 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010332 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 SO4 B 1 358 358 SO4 SO4 . 
E 4 SO4 C 1 357 357 SO4 SO4 . 
F 5 V35 C 1 358 195 V35 V35 . 
G 6 HOH A 1 254 254 HOH HOH . 
G 6 HOH A 2 288 288 HOH HOH . 
G 6 HOH A 3 291 291 HOH HOH . 
G 6 HOH A 4 292 292 HOH HOH . 
G 6 HOH A 5 320 320 HOH HOH . 
G 6 HOH A 6 323 323 HOH HOH . 
H 6 HOH B 1 247 247 HOH HOH . 
H 6 HOH B 2 248 248 HOH HOH . 
H 6 HOH B 3 249 249 HOH HOH . 
H 6 HOH B 4 251 251 HOH HOH . 
H 6 HOH B 5 252 252 HOH HOH . 
H 6 HOH B 6 256 256 HOH HOH . 
H 6 HOH B 7 257 257 HOH HOH . 
H 6 HOH B 8 260 260 HOH HOH . 
H 6 HOH B 9 262 262 HOH HOH . 
H 6 HOH B 10 263 263 HOH HOH . 
H 6 HOH B 11 264 264 HOH HOH . 
H 6 HOH B 12 267 267 HOH HOH . 
H 6 HOH B 13 268 268 HOH HOH . 
H 6 HOH B 14 269 269 HOH HOH . 
H 6 HOH B 15 275 275 HOH HOH . 
H 6 HOH B 16 276 276 HOH HOH . 
H 6 HOH B 17 277 277 HOH HOH . 
H 6 HOH B 18 278 278 HOH HOH . 
H 6 HOH B 19 279 279 HOH HOH . 
H 6 HOH B 20 282 282 HOH HOH . 
H 6 HOH B 21 285 285 HOH HOH . 
H 6 HOH B 22 287 287 HOH HOH . 
H 6 HOH B 23 289 289 HOH HOH . 
H 6 HOH B 24 295 295 HOH HOH . 
H 6 HOH B 25 298 298 HOH HOH . 
H 6 HOH B 26 299 299 HOH HOH . 
H 6 HOH B 27 304 304 HOH HOH . 
H 6 HOH B 28 305 305 HOH HOH . 
H 6 HOH B 29 308 308 HOH HOH . 
H 6 HOH B 30 309 309 HOH HOH . 
H 6 HOH B 31 310 310 HOH HOH . 
H 6 HOH B 32 311 311 HOH HOH . 
H 6 HOH B 33 313 313 HOH HOH . 
H 6 HOH B 34 316 316 HOH HOH . 
H 6 HOH B 35 317 317 HOH HOH . 
H 6 HOH B 36 319 319 HOH HOH . 
H 6 HOH B 37 322 322 HOH HOH . 
H 6 HOH B 38 324 324 HOH HOH . 
H 6 HOH B 39 325 325 HOH HOH . 
H 6 HOH B 40 327 327 HOH HOH . 
H 6 HOH B 41 330 330 HOH HOH . 
H 6 HOH B 42 331 331 HOH HOH . 
H 6 HOH B 43 334 334 HOH HOH . 
H 6 HOH B 44 338 338 HOH HOH . 
H 6 HOH B 45 339 339 HOH HOH . 
H 6 HOH B 46 341 341 HOH HOH . 
I 6 HOH C 1 250 250 HOH HOH . 
I 6 HOH C 2 253 253 HOH HOH . 
I 6 HOH C 3 255 255 HOH HOH . 
I 6 HOH C 4 258 258 HOH HOH . 
I 6 HOH C 5 259 259 HOH HOH . 
I 6 HOH C 6 261 261 HOH HOH . 
I 6 HOH C 7 265 265 HOH HOH . 
I 6 HOH C 8 266 266 HOH HOH . 
I 6 HOH C 9 270 270 HOH HOH . 
I 6 HOH C 10 271 271 HOH HOH . 
I 6 HOH C 11 272 272 HOH HOH . 
I 6 HOH C 12 273 273 HOH HOH . 
I 6 HOH C 13 274 274 HOH HOH . 
I 6 HOH C 14 280 280 HOH HOH . 
I 6 HOH C 15 281 281 HOH HOH . 
I 6 HOH C 16 283 283 HOH HOH . 
I 6 HOH C 17 284 284 HOH HOH . 
I 6 HOH C 18 286 286 HOH HOH . 
I 6 HOH C 19 290 290 HOH HOH . 
I 6 HOH C 20 293 293 HOH HOH . 
I 6 HOH C 21 294 294 HOH HOH . 
I 6 HOH C 22 296 296 HOH HOH . 
I 6 HOH C 23 297 297 HOH HOH . 
I 6 HOH C 24 300 300 HOH HOH . 
I 6 HOH C 25 301 301 HOH HOH . 
I 6 HOH C 26 302 302 HOH HOH . 
I 6 HOH C 27 303 303 HOH HOH . 
I 6 HOH C 28 306 306 HOH HOH . 
I 6 HOH C 29 307 307 HOH HOH . 
I 6 HOH C 30 312 312 HOH HOH . 
I 6 HOH C 31 314 314 HOH HOH . 
I 6 HOH C 32 315 315 HOH HOH . 
I 6 HOH C 33 318 318 HOH HOH . 
I 6 HOH C 34 321 321 HOH HOH . 
I 6 HOH C 35 326 326 HOH HOH . 
I 6 HOH C 36 328 328 HOH HOH . 
I 6 HOH C 37 329 329 HOH HOH . 
I 6 HOH C 38 332 332 HOH HOH . 
I 6 HOH C 39 333 333 HOH HOH . 
I 6 HOH C 40 335 335 HOH HOH . 
I 6 HOH C 41 336 336 HOH HOH . 
I 6 HOH C 42 337 337 HOH HOH . 
I 6 HOH C 43 340 340 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 V35 . . . F 5 27.496 2.961 39.921 1 25.94 ? C1 V35 358 C 1 
HETATM 2 C C2 V35 . . . F 5 27.905 2.354 41.109 1 27.42 ? C2 V35 358 C 1 
HETATM 3 C C3 V35 . . . F 5 27.638 2.943 42.341 1 26.73 ? C3 V35 358 C 1 
HETATM 4 C C4 V35 . . . F 5 26.958 4.149 42.377 1 27.07 ? C4 V35 358 C 1 
HETATM 5 C C5 V35 . . . F 5 26.556 4.772 41.211 1 25.87 ? C5 V35 358 C 1 
HETATM 6 C C6 V35 . . . F 5 26.825 4.179 39.998 1 26.17 ? C6 V35 358 C 1 
HETATM 7 C C7 V35 . . . F 5 27.701 2.285 38.591 1 25.92 ? C7 V35 358 C 1 
HETATM 8 C C8 V35 . . . F 5 29.093 2.458 37.983 1 26.43 ? C8 V35 358 C 1 
HETATM 9 C C9 V35 . . . F 5 32.335 0.489 38.178 1 35.37 ? C9 V35 358 C 1 
HETATM 10 C C V35 . . . F 5 31.396 1.683 38.266 1 33.76 ? C V35 358 C 1 
HETATM 11 N N V35 . . . F 5 30.09 1.454 38.323 1 31.77 ? N V35 358 C 1 
HETATM 12 O O V35 . . . F 5 31.863 2.83 38.333 1 38.7 ? O V35 358 C 1 
HETATM 13 O O1B V35 . . . F 5 28.875 1.033 35.922 1 22.7 ? O1B V35 358 C 1 
HETATM 14 B B V35 . . . F 5 28.896 2.44 36.355 1 22.44 ? B V35 358 C 1 
HETATM 15 CL CL4 V35 . . . F 5 26.529 4.963 43.851 1 28.05 ? CL4 V35 358 C 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    15 
_model_server_stats.query_time_ms           343 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           15 
#