data_2VH5
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_model_server_result.job_id            el9aBqZPDpJ0BD6rxWRtxQ 
_model_server_result.datetime_utc      '2025-07-07 20:08:26' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2vh5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":1168}' 
#
_entry.id    2VH5 
#
_exptl.entry_id    2VH5 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              24.305 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MAGNESIUM ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2VH5 
_cell.length_a            75.863 
_cell.length_b            85.403 
_cell.length_c            63.084 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
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_symmetry.entry_id                 2VH5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 2' 
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_pdbx_struct_assembly.method_details        PQS 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
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_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
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_struct_asym.details                        ? 
_struct_asym.entity_id                      6 
_struct_asym.id                             H 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD2 ASP 62 H ASP 62 1_555 E ZN ZN . H ZN 1116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? 
metalc ? metalc2 A OD1 ASP 73 H ASP 73 1_555 D ZN ZN . H ZN 1115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.241 ? 
metalc ? metalc3 C OG SER 17 R SER 17 1_555 H MG MG . R MG 1168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.726 ? 
metalc ? metalc4 C OG1 THR 35 R THR 35 1_555 H MG MG . R MG 1168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.901 ? 
metalc ? metalc5 G O2G GTP . R GTP 1167 1_555 H MG MG . R MG 1168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.891 ? 
metalc ? metalc6 G O1B GTP . R GTP 1167 1_555 H MG MG . R MG 1168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.823 ? 
#
_chem_comp.formula           'Mg 2' 
_chem_comp.formula_weight    24.305 
_chem_comp.id                MG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MAGNESIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
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_atom_sites.entry_id                     2VH5 
_atom_sites.fract_transf_matrix[1][1]    0.013182 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011709 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015852 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 ZN H 1 1115 1115 ZN ZN . 
E 4 ZN H 1 1116 1116 ZN ZN . 
F 4 ZN R 1 1169 1169 ZN ZN . 
G 5 GTP R 1 1167 1167 GTP GTP . 
H 6 MG R 1 1168 1168 MG MG . 
I 7 HOH H 1 2001 2001 HOH HOH . 
I 7 HOH H 2 2002 2002 HOH HOH . 
I 7 HOH H 3 2003 2003 HOH HOH . 
I 7 HOH H 4 2004 2004 HOH HOH . 
I 7 HOH H 5 2005 2005 HOH HOH . 
I 7 HOH H 6 2006 2006 HOH HOH . 
I 7 HOH H 7 2007 2007 HOH HOH . 
I 7 HOH H 8 2008 2008 HOH HOH . 
I 7 HOH H 9 2009 2009 HOH HOH . 
I 7 HOH H 10 2010 2010 HOH HOH . 
J 7 HOH L 1 2001 2001 HOH HOH . 
J 7 HOH L 2 2002 2002 HOH HOH . 
J 7 HOH L 3 2003 2003 HOH HOH . 
J 7 HOH L 4 2004 2004 HOH HOH . 
J 7 HOH L 5 2005 2005 HOH HOH . 
J 7 HOH L 6 2006 2006 HOH HOH . 
J 7 HOH L 7 2007 2007 HOH HOH . 
J 7 HOH L 8 2008 2008 HOH HOH . 
J 7 HOH L 9 2009 2009 HOH HOH . 
K 7 HOH R 1 2001 2001 HOH HOH . 
K 7 HOH R 2 2002 2002 HOH HOH . 
K 7 HOH R 3 2003 2003 HOH HOH . 
K 7 HOH R 4 2004 2004 HOH HOH . 
K 7 HOH R 5 2005 2005 HOH HOH . 
K 7 HOH R 6 2006 2006 HOH HOH . 
K 7 HOH R 7 2007 2007 HOH HOH . 
K 7 HOH R 8 2008 2008 HOH HOH . 
K 7 HOH R 9 2009 2009 HOH HOH . 
K 7 HOH R 10 2010 2010 HOH HOH . 
K 7 HOH R 11 2011 2011 HOH HOH . 
K 7 HOH R 12 2012 2012 HOH HOH . 
K 7 HOH R 13 2013 2013 HOH HOH . 
K 7 HOH R 14 2014 2014 HOH HOH . 
K 7 HOH R 15 2015 2015 HOH HOH . 
K 7 HOH R 16 2016 2016 HOH HOH . 
K 7 HOH R 17 2017 2017 HOH HOH . 
K 7 HOH R 18 2018 2018 HOH HOH . 
K 7 HOH R 19 2019 2019 HOH HOH . 
K 7 HOH R 20 2020 2020 HOH HOH . 
K 7 HOH R 21 2021 2021 HOH HOH . 
K 7 HOH R 22 2022 2022 HOH HOH . 
K 7 HOH R 23 2023 2023 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MG 
_atom_site.label_atom_id         MG 
_atom_site.label_comp_id         MG 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         H 
_atom_site.label_entity_id       6 
_atom_site.Cartn_x               3.574 
_atom_site.Cartn_y               20.239 
_atom_site.Cartn_z               23.293 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        12.02 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MG 
_atom_site.auth_comp_id          MG 
_atom_site.auth_seq_id           1168 
_atom_site.auth_asym_id          R 
_atom_site.pdbx_PDB_model_num    1 
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_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    16 
_model_server_stats.query_time_ms           282 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           1 
#