data_2VHV # _model_server_result.job_id g-cR4ETv0QbBTRsVgmjnug _model_server_result.datetime_utc '2024-11-16 11:39:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2vhv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1372}' # _entry.id 2VHV # _exptl.entry_id 2VHV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 665.441 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2VHV _cell.length_a 140.802 _cell.length_b 140.802 _cell.length_c 140.802 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2VHV _symmetry.cell_setting ? _symmetry.Int_Tables_number 198 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 3' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_555 -z,x+1/2,-y+1/2 0 0 -1 1 0 0 0 -1 0 0 70.401 70.401 3 'crystal symmetry operation' 11_455 y-1/2,-z+1/2,-x 0 1 0 0 0 -1 -1 0 0 -70.401 70.401 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C21 H29 N7 O14 P2' _chem_comp.formula_weight 665.441 _chem_comp.id NAI _chem_comp.mon_nstd_flag . _chem_comp.name '1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms NADH # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAI doub 237 n n PA O2A NAI sing 238 n n PA O5B NAI sing 239 n n PA O3 NAI sing 240 n n O2A HOA2 NAI sing 241 n n O5B C5B NAI sing 242 n n C5B C4B NAI sing 243 n n C5B H51A NAI sing 244 n n C5B H52A NAI sing 245 n n C4B O4B NAI sing 246 n n C4B C3B NAI sing 247 n n C4B H4B NAI sing 248 n n O4B C1B NAI sing 249 n n C3B O3B NAI sing 250 n n C3B C2B NAI sing 251 n n C3B H3B NAI sing 252 n n O3B HO3A NAI sing 253 n n C2B O2B NAI sing 254 n n C2B C1B NAI sing 255 n n C2B H2B NAI sing 256 n n O2B HO2A NAI sing 257 n n C1B N9A NAI sing 258 n n C1B H1B NAI sing 259 n n N9A C8A NAI sing 260 n y N9A C4A NAI sing 261 n y C8A N7A NAI doub 262 n y C8A H8A NAI sing 263 n n N7A C5A NAI sing 264 n y C5A C6A NAI sing 265 n y C5A C4A NAI doub 266 n y C6A N6A NAI sing 267 n n C6A N1A NAI doub 268 n y N6A H61A NAI sing 269 n n N6A H62A NAI sing 270 n n N1A C2A NAI sing 271 n y C2A N3A NAI doub 272 n y C2A H2A NAI sing 273 n n N3A C4A NAI sing 274 n y O3 PN NAI sing 275 n n PN O1N NAI sing 276 n n PN O2N NAI doub 277 n n PN O5D NAI sing 278 n n O1N HO1N NAI sing 279 n n O5D C5D NAI sing 280 n n C5D C4D NAI sing 281 n n C5D H51N NAI sing 282 n n C5D H52N NAI sing 283 n n C4D O4D NAI sing 284 n n C4D C3D NAI sing 285 n n C4D H4D NAI sing 286 n n O4D C1D NAI sing 287 n n C3D O3D NAI sing 288 n n C3D C2D NAI sing 289 n n C3D H3D NAI sing 290 n n O3D HO3N NAI sing 291 n n C2D O2D NAI sing 292 n n C2D C1D NAI sing 293 n n C2D H2D NAI sing 294 n n O2D HO2N NAI sing 295 n n C1D N1N NAI sing 296 n n C1D H1D NAI sing 297 n n N1N C2N NAI sing 298 n n N1N C6N NAI sing 299 n n C2N C3N NAI doub 300 n n C2N H2N NAI sing 301 n n C3N C7N NAI sing 302 n n C3N C4N NAI sing 303 n n C7N O7N NAI doub 304 n n C7N N7N NAI sing 305 n n N7N H71N NAI sing 306 n n N7N H72N NAI sing 307 n n C4N C5N NAI sing 308 n n C4N H4N NAI sing 309 n n C4N H42N NAI sing 310 n n C5N C6N NAI doub 311 n n C5N H5N NAI sing 312 n n C6N H6N NAI sing 313 n n # _atom_sites.entry_id 2VHV _atom_sites.fract_transf_matrix[1][1] 0.007102 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007102 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007102 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAI A 1 1372 1372 NAI NAI . D 2 NAI B 1 1372 1372 NAI NAI . E 3 HOH A 1 2001 2001 HOH HOH . E 3 HOH A 2 2002 2002 HOH HOH . E 3 HOH A 3 2003 2003 HOH HOH . E 3 HOH A 4 2004 2004 HOH HOH . E 3 HOH A 5 2005 2005 HOH HOH . E 3 HOH A 6 2006 2006 HOH HOH . E 3 HOH A 7 2007 2007 HOH HOH . E 3 HOH A 8 2008 2008 HOH HOH . E 3 HOH A 9 2009 2009 HOH HOH . E 3 HOH A 10 2010 2010 HOH HOH . F 3 HOH B 1 2001 2001 HOH HOH . F 3 HOH B 2 2002 2002 HOH HOH . F 3 HOH B 3 2003 2003 HOH HOH . F 3 HOH B 4 2004 2004 HOH HOH . F 3 HOH B 5 2005 2005 HOH HOH . F 3 HOH B 6 2006 2006 HOH HOH . F 3 HOH B 7 2007 2007 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAI . . . D 2 -1.889 52.646 -3.428 1 33.31 ? PA NAI 1372 B 1 HETATM 2 O O1A NAI . . . D 2 -0.682 53.477 -3.797 1 33.14 ? O1A NAI 1372 B 1 HETATM 3 O O2A NAI . . . D 2 -3.169 53.231 -2.882 1 33.94 ? O2A NAI 1372 B 1 HETATM 4 O O5B NAI . . . D 2 -1.42 51.531 -2.372 1 37.03 ? O5B NAI 1372 B 1 HETATM 5 C C5B NAI . . . D 2 -0.202 50.793 -2.504 1 37.62 ? C5B NAI 1372 B 1 HETATM 6 C C4B NAI . . . D 2 0.531 50.836 -1.172 1 36.8 ? C4B NAI 1372 B 1 HETATM 7 O O4B NAI . . . D 2 1.558 49.854 -1.15 1 36.41 ? O4B NAI 1372 B 1 HETATM 8 C C3B NAI . . . D 2 1.209 52.184 -0.999 1 37.97 ? C3B NAI 1372 B 1 HETATM 9 O O3B NAI . . . D 2 0.592 52.884 0.095 1 39.82 ? O3B NAI 1372 B 1 HETATM 10 C C2B NAI . . . D 2 2.689 51.866 -0.767 1 36.08 ? C2B NAI 1372 B 1 HETATM 11 O O2B NAI . . . D 2 3.284 52.643 0.273 1 34.48 ? O2B NAI 1372 B 1 HETATM 12 C C1B NAI . . . D 2 2.688 50.383 -0.431 1 36.02 ? C1B NAI 1372 B 1 HETATM 13 N N9A NAI . . . D 2 3.986 49.728 -0.798 1 35.8 ? N9A NAI 1372 B 1 HETATM 14 C C8A NAI . . . D 2 4.717 49.973 -1.904 1 34.8 ? C8A NAI 1372 B 1 HETATM 15 N N7A NAI . . . D 2 5.831 49.221 -1.922 1 34.16 ? N7A NAI 1372 B 1 HETATM 16 C C5A NAI . . . D 2 5.831 48.459 -0.819 1 34.38 ? C5A NAI 1372 B 1 HETATM 17 C C6A NAI . . . D 2 6.742 47.441 -0.224 1 35.29 ? C6A NAI 1372 B 1 HETATM 18 N N6A NAI . . . D 2 7.886 47.078 -0.859 1 34.81 ? N6A NAI 1372 B 1 HETATM 19 N N1A NAI . . . D 2 6.375 46.872 0.958 1 35.51 ? N1A NAI 1372 B 1 HETATM 20 C C2A NAI . . . D 2 5.23 47.243 1.587 1 35.36 ? C2A NAI 1372 B 1 HETATM 21 N N3A NAI . . . D 2 4.365 48.17 1.101 1 35.1 ? N3A NAI 1372 B 1 HETATM 22 C C4A NAI . . . D 2 4.609 48.796 -0.08 1 34.63 ? C4A NAI 1372 B 1 HETATM 23 O O3 NAI . . . D 2 -2.267 51.67 -4.61 1 34.04 ? O3 NAI 1372 B 1 HETATM 24 P PN NAI . . . D 2 -3.716 51.021 -4.655 1 34.33 ? PN NAI 1372 B 1 HETATM 25 O O1N NAI . . . D 2 -4.555 52.046 -5.373 1 35.18 ? O1N NAI 1372 B 1 HETATM 26 O O2N NAI . . . D 2 -4.136 50.491 -3.308 1 37.53 ? O2N NAI 1372 B 1 HETATM 27 O O5D NAI . . . D 2 -3.423 49.755 -5.602 1 35.7 ? O5D NAI 1372 B 1 HETATM 28 C C5D NAI . . . D 2 -2.753 48.581 -5.161 1 36.25 ? C5D NAI 1372 B 1 HETATM 29 C C4D NAI . . . D 2 -2.69 47.601 -6.325 1 37.09 ? C4D NAI 1372 B 1 HETATM 30 O O4D NAI . . . D 2 -3.992 47.089 -6.619 1 36.54 ? O4D NAI 1372 B 1 HETATM 31 C C3D NAI . . . D 2 -2.191 48.236 -7.619 1 38.68 ? C3D NAI 1372 B 1 HETATM 32 O O3D NAI . . . D 2 -1.106 47.431 -8.151 1 41.21 ? O3D NAI 1372 B 1 HETATM 33 C C2D NAI . . . D 2 -3.405 48.203 -8.525 1 37.58 ? C2D NAI 1372 B 1 HETATM 34 O O2D NAI . . . D 2 -3.053 48.15 -9.906 1 37.6 ? O2D NAI 1372 B 1 HETATM 35 C C1D NAI . . . D 2 -4.104 46.955 -8.027 1 37.35 ? C1D NAI 1372 B 1 HETATM 36 N N1N NAI . . . D 2 -5.507 46.836 -8.417 1 39.07 ? N1N NAI 1372 B 1 HETATM 37 C C2N NAI . . . D 2 -5.927 45.634 -8.896 1 38.22 ? C2N NAI 1372 B 1 HETATM 38 C C3N NAI . . . D 2 -7.254 45.438 -9.288 1 37.31 ? C3N NAI 1372 B 1 HETATM 39 C C7N NAI . . . D 2 -7.715 44.102 -9.805 1 38.59 ? C7N NAI 1372 B 1 HETATM 40 O O7N NAI . . . D 2 -8.83 43.983 -10.32 1 39.38 ? O7N NAI 1372 B 1 HETATM 41 N N7N NAI . . . D 2 -6.911 43.043 -9.666 1 38.76 ? N7N NAI 1372 B 1 HETATM 42 C C4N NAI . . . D 2 -8.15 46.505 -9.18 1 36.99 ? C4N NAI 1372 B 1 HETATM 43 C C5N NAI . . . D 2 -7.704 47.733 -8.673 1 37.66 ? C5N NAI 1372 B 1 HETATM 44 C C6N NAI . . . D 2 -6.363 47.883 -8.288 1 38.31 ? C6N NAI 1372 B 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 34 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 44 #