data_2VKZ # _model_server_result.job_id hl4awSmLnX0i5SmF0EZFuw _model_server_result.datetime_utc '2024-11-15 01:35:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2vkz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":2748}' # _entry.id 2VKZ # _exptl.entry_id 2VKZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 225.284 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2S,3R)-3-HYDROXY-4-OXO-7,10-TRANS,TRANS-DODECADIENAMIDE _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2VKZ _cell.length_a 231.9 _cell.length_b 231.9 _cell.length_c 756.8 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2VKZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 H N N ? 3 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 1305 A CYS 1305 1_555 G C2 CER . A CER 2748 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.849 ? covale ? covale2 B SG CYS 1305 B CYS 1305 1_555 H C2 CER . B CER 2748 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.871 ? covale ? covale3 C SG CYS 1305 C CYS 1305 1_555 I C2 CER . C CER 2748 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.874 ? # _chem_comp.formula 'C12 H19 N O3' _chem_comp.formula_weight 225.284 _chem_comp.id CER _chem_comp.mon_nstd_flag . _chem_comp.name '(2S, 3R)-3-HYDROXY-4-OXO-7,10-TRANS,TRANS-DODECADIENAMIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms CERULENIN # _atom_sites.entry_id 2VKZ _atom_sites.fract_transf_matrix[1][1] 0.004312 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004312 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.001321 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 3 CER A 1 2748 2748 CER CER . H 3 CER B 1 2748 2748 CER CER . I 3 CER C 1 2748 2748 CER CER . J 4 FMN G 1 3051 3051 FMN FMN . K 4 FMN H 1 3051 3051 FMN FMN . L 4 FMN I 1 3051 3051 FMN FMN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CER . . . I 3 238.64 42.202 -43.205 1 134.43 ? C1 CER 2748 C 1 HETATM 2 N N1 CER . . . I 3 239.635 41.128 -43.096 1 70.49 ? N1 CER 2748 C 1 HETATM 3 O O1 CER . . . I 3 235.25 38.706 -42.807 1 253.13 ? O1 CER 2748 C 1 HETATM 4 C C2 CER . . . I 3 237.194 41.963 -42.698 1 160.54 ? C2 CER 2748 C 1 HETATM 5 O O2 CER . . . I 3 238.983 43.296 -43.539 1 81.11 ? O2 CER 2748 C 1 HETATM 6 C C3 CER . . . I 3 236.661 40.613 -43.254 1 132.12 ? C3 CER 2748 C 1 HETATM 7 O O3 CER . . . I 3 236.171 40.81 -44.564 1 132.29 ? O3 CER 2748 C 1 HETATM 8 C C4 CER . . . I 3 235.515 40.027 -42.38 1 252.2 ? C4 CER 2748 C 1 HETATM 9 C C5 CER . . . I 3 234.209 40.855 -42.543 1 181.92 ? C5 CER 2748 C 1 HETATM 10 C C6 CER . . . I 3 233.044 39.883 -42.839 1 161.71 ? C6 CER 2748 C 1 HETATM 11 C C7 CER . . . I 3 232.457 39.398 -41.501 1 161.83 ? C7 CER 2748 C 1 HETATM 12 C C8 CER . . . I 3 231.476 40.052 -40.89 1 131.06 ? C8 CER 2748 C 1 # _model_server_stats.io_time_ms 80 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 352 _model_server_stats.query_time_ms 334 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 12 #