data_2VKZ # _model_server_result.job_id CcOa5uXf8acF9niX-hCkQw _model_server_result.datetime_utc '2024-11-15 01:49:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2vkz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":3051}' # _entry.id 2VKZ # _exptl.entry_id 2VKZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2VKZ _cell.length_a 231.9 _cell.length_b 231.9 _cell.length_c 756.8 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2VKZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 J N N ? 4 K N N ? 4 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 1305 A CYS 1305 1_555 G C2 CER . A CER 2748 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.849 ? covale ? covale2 B SG CYS 1305 B CYS 1305 1_555 H C2 CER . B CER 2748 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.871 ? covale ? covale3 C SG CYS 1305 C CYS 1305 1_555 I C2 CER . C CER 2748 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.874 ? # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # _atom_sites.entry_id 2VKZ _atom_sites.fract_transf_matrix[1][1] 0.004312 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004312 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.001321 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 3 CER A 1 2748 2748 CER CER . H 3 CER B 1 2748 2748 CER CER . I 3 CER C 1 2748 2748 CER CER . J 4 FMN G 1 3051 3051 FMN FMN . K 4 FMN H 1 3051 3051 FMN FMN . L 4 FMN I 1 3051 3051 FMN FMN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . J 4 123.213 -6.616 38.129 1 160.19 ? N1 FMN 3051 G 1 HETATM 2 C C2 FMN . . . J 4 123.929 -5.574 37.268 1 151.19 ? C2 FMN 3051 G 1 HETATM 3 O O2 FMN . . . J 4 124.515 -4.47 37.904 1 206.65 ? O2 FMN 3051 G 1 HETATM 4 N N3 FMN . . . J 4 124.008 -5.741 35.758 1 165.77 ? N3 FMN 3051 G 1 HETATM 5 C C4 FMN . . . J 4 123.394 -6.922 35.072 1 168.97 ? C4 FMN 3051 G 1 HETATM 6 O O4 FMN . . . J 4 123.471 -7.056 33.659 1 144.15 ? O4 FMN 3051 G 1 HETATM 7 C C4A FMN . . . J 4 122.683 -7.968 35.935 1 137.99 ? C4A FMN 3051 G 1 HETATM 8 N N5 FMN . . . J 4 122.04 -9.181 35.307 1 161.38 ? N5 FMN 3051 G 1 HETATM 9 C C5A FMN . . . J 4 121.327 -10.192 36.172 1 161.53 ? C5A FMN 3051 G 1 HETATM 10 C C6 FMN . . . J 4 120.651 -11.453 35.498 1 168.19 ? C6 FMN 3051 G 1 HETATM 11 C C7 FMN . . . J 4 119.908 -12.505 36.404 1 173.54 ? C7 FMN 3051 G 1 HETATM 12 C C7M FMN . . . J 4 119.254 -13.737 35.743 1 166.15 ? C7M FMN 3051 G 1 HETATM 13 C C8 FMN . . . J 4 119.839 -12.305 37.966 1 162.37 ? C8 FMN 3051 G 1 HETATM 14 C C8M FMN . . . J 4 119.129 -13.324 38.877 1 156 ? C8M FMN 3051 G 1 HETATM 15 C C9 FMN . . . J 4 120.505 -11.062 38.619 1 152.14 ? C9 FMN 3051 G 1 HETATM 16 C C9A FMN . . . J 4 121.253 -9.995 37.705 1 152.44 ? C9A FMN 3051 G 1 HETATM 17 N N10 FMN . . . J 4 121.903 -8.802 38.336 1 159.81 ? N10 FMN 3051 G 1 HETATM 18 C C10 FMN . . . J 4 122.611 -7.789 37.467 1 163.85 ? C10 FMN 3051 G 1 HETATM 19 C C1' FMN . . . J 4 121.843 -8.558 39.784 1 164.32 ? C1' FMN 3051 G 1 HETATM 20 C C2' FMN . . . J 4 120.406 -8.038 40.117 1 168.54 ? C2' FMN 3051 G 1 HETATM 21 O O2' FMN . . . J 4 120.173 -6.849 39.389 1 151.87 ? O2' FMN 3051 G 1 HETATM 22 C C3' FMN . . . J 4 120.256 -7.733 41.627 1 150.8 ? C3' FMN 3051 G 1 HETATM 23 O O3' FMN . . . J 4 121.363 -6.999 42.11 1 139.16 ? O3' FMN 3051 G 1 HETATM 24 C C4' FMN . . . J 4 120.122 -9.077 42.366 1 163.19 ? C4' FMN 3051 G 1 HETATM 25 O O4' FMN . . . J 4 119.511 -9.991 41.473 1 172.36 ? O4' FMN 3051 G 1 HETATM 26 C C5' FMN . . . J 4 119.149 -8.918 43.544 1 149.71 ? C5' FMN 3051 G 1 HETATM 27 O O5' FMN . . . J 4 119.204 -10.142 44.221 1 187.83 ? O5' FMN 3051 G 1 HETATM 28 P P FMN . . . J 4 117.836 -11.047 44.306 1 179.92 ? P FMN 3051 G 1 HETATM 29 O O1P FMN . . . J 4 118.024 -12.137 45.277 1 171.53 ? O1P FMN 3051 G 1 HETATM 30 O O2P FMN . . . J 4 116.588 -10.036 44.707 1 190.89 ? O2P FMN 3051 G 1 HETATM 31 O O3P FMN . . . J 4 117.599 -11.691 42.812 1 149.36 ? O3P FMN 3051 G 1 # _model_server_stats.io_time_ms 42 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 88 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 16 _model_server_stats.element_count 31 #