data_2VL8
#
_model_server_result.job_id            OQ4qZlV16THLsUceH8XNDQ 
_model_server_result.datetime_utc      '2024-11-27 02:46:55' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2vl8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1543}' 
#
_entry.id    2VL8 
#
_exptl.entry_id    2VL8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              404.161 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "URIDINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2VL8 
_cell.length_a            57.689 
_cell.length_b            191.332 
_cell.length_c            205.384 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2VL8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PQS monomeric 1 author_and_software_defined_assembly 1 
PQS monomeric 1 author_and_software_defined_assembly 2 
PQS monomeric 1 author_and_software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,E,F,G,H,O 1 1 
B,I,J,K,P 2 1 
C,L,M,N,Q 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 D N N 
? 2 I N N 
? 2 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OE1 GLU 219 A GLU 219 1_555 H CA CA . A CA 1547 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.798 ? 
metalc ? metalc2 A OE2 GLU 219 A GLU 219 1_555 H CA CA . A CA 1547 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.507 ? 
metalc ? metalc3 A OD1 ASP 280 A ASP 280 1_555 G CA CA . A CA 1546 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? 
metalc ? metalc4 A OD2 ASP 288 A ASP 288 1_555 F CA CA . A CA 1545 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? 
metalc ? metalc5 A OE1 GLU 515 A GLU 515 1_555 F CA CA . A CA 1545 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? 
metalc ? metalc6 A OG SER 518 A SER 518 1_555 F CA CA . A CA 1545 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.815 ? 
metalc ? metalc7 D O2B UDP . A UDP 1543 1_555 F CA CA . A CA 1545 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.467 ? 
metalc ? metalc8 D O2A UDP . A UDP 1543 1_555 F CA CA . A CA 1545 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.49 ? 
metalc ? metalc9 F CA CA . A CA 1545 1_555 O O HOH . A HOH 2077 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.451 ? 
metalc ? metalc10 G CA CA . A CA 1546 1_555 O O HOH . A HOH 2074 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.421 ? 
metalc ? metalc11 G CA CA . A CA 1546 1_555 B OE1 GLU 219 B GLU 219 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.971 ? 
metalc ? metalc12 G CA CA . A CA 1546 1_555 B OE2 GLU 219 B GLU 219 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.789 ? 
metalc ? metalc13 H CA CA . A CA 1547 1_555 C OD1 ASP 280 C ASP 280 3_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? 
metalc ? metalc14 B OD2 ASP 288 B ASP 288 1_555 K CA CA . B CA 1545 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.474 ? 
metalc ? metalc15 B OE1 GLU 515 B GLU 515 1_555 K CA CA . B CA 1545 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? 
metalc ? metalc16 B OG SER 518 B SER 518 1_555 K CA CA . B CA 1545 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.617 ? 
metalc ? metalc17 I O2A UDP . B UDP 1543 1_555 K CA CA . B CA 1545 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.459 ? 
metalc ? metalc18 I O2B UDP . B UDP 1543 1_555 K CA CA . B CA 1545 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? 
metalc ? metalc19 K CA CA . B CA 1545 1_555 P O HOH . B HOH 2081 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.404 ? 
metalc ? metalc20 C OD2 ASP 288 C ASP 288 1_555 N CA CA . C CA 1545 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.224 ? 
metalc ? metalc21 C OE1 GLU 515 C GLU 515 1_555 N CA CA . C CA 1545 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.2 ? 
metalc ? metalc22 C OG SER 518 C SER 518 1_555 N CA CA . C CA 1545 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.661 ? 
metalc ? metalc23 L O3B UDP . C UDP 1543 1_555 N CA CA . C CA 1545 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? 
metalc ? metalc24 L O2A UDP . C UDP 1543 1_555 N CA CA . C CA 1545 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.61 ? 
metalc ? metalc25 N CA CA . C CA 1545 1_555 Q O HOH . C HOH 2076 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.434 ? 
#
_chem_comp.formula           'C9 H14 N2 O12 P2' 
_chem_comp.formula_weight    404.161 
_chem_comp.id                UDP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "URIDINE-5'-DIPHOSPHATE" 
_chem_comp.type              'rna linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 UDP sing 387 n n 
N1 C6 UDP sing 388 n n 
N1 C1' UDP sing 389 n n 
C2 N3 UDP sing 390 n n 
C2 O2 UDP doub 391 n n 
N3 C4 UDP sing 392 n n 
N3 HN3 UDP sing 393 n n 
C4 C5 UDP sing 394 n n 
C4 O4 UDP doub 395 n n 
C5 C6 UDP doub 396 n n 
C5 H5 UDP sing 397 n n 
C6 H6 UDP sing 398 n n 
C1' C2' UDP sing 399 n n 
C1' O4' UDP sing 400 n n 
C1' H1' UDP sing 401 n n 
C2' O2' UDP sing 402 n n 
C2' C3' UDP sing 403 n n 
C2' H2' UDP sing 404 n n 
O2' HO2' UDP sing 405 n n 
C3' C4' UDP sing 406 n n 
C3' O3' UDP sing 407 n n 
C3' H3' UDP sing 408 n n 
C4' O4' UDP sing 409 n n 
C4' C5' UDP sing 410 n n 
C4' H4' UDP sing 411 n n 
O3' HO3' UDP sing 412 n n 
C5' O5' UDP sing 413 n n 
C5' "H5'1" UDP sing 414 n n 
C5' "H5'2" UDP sing 415 n n 
O5' PA UDP sing 416 n n 
PA O1A UDP doub 417 n n 
PA O2A UDP sing 418 n n 
PA O3A UDP sing 419 n n 
O2A HOA2 UDP sing 420 n n 
O3A PB UDP sing 421 n n 
PB O1B UDP doub 422 n n 
PB O2B UDP sing 423 n n 
PB O3B UDP sing 424 n n 
O2B HOB2 UDP sing 425 n n 
O3B HOB3 UDP sing 426 n n 
#
_atom_sites.entry_id                     2VL8 
_atom_sites.fract_transf_matrix[1][1]    0.017334 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005227 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004869 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 UDP A 1 1543 1543 UDP UDP . 
E 3 CTS A 1 1544 1544 CTS CTS . 
F 4 CA A 1 1545 1545 CA CA . 
G 4 CA A 1 1546 1546 CA CA . 
H 4 CA A 1 1547 1547 CA CA . 
I 2 UDP B 1 1543 1543 UDP UDP . 
J 3 CTS B 1 1544 1544 CTS CTS . 
K 4 CA B 1 1545 1545 CA CA . 
L 2 UDP C 1 1543 1543 UDP UDP . 
M 3 CTS C 1 1544 1544 CTS CTS . 
N 4 CA C 1 1545 1545 CA CA . 
O 5 HOH A 1 2001 2001 HOH HOH . 
O 5 HOH A 2 2002 2002 HOH HOH . 
O 5 HOH A 3 2003 2003 HOH HOH . 
O 5 HOH A 4 2004 2004 HOH HOH . 
O 5 HOH A 5 2005 2005 HOH HOH . 
O 5 HOH A 6 2006 2006 HOH HOH . 
O 5 HOH A 7 2007 2007 HOH HOH . 
O 5 HOH A 8 2008 2008 HOH HOH . 
O 5 HOH A 9 2009 2009 HOH HOH . 
O 5 HOH A 10 2010 2010 HOH HOH . 
O 5 HOH A 11 2011 2011 HOH HOH . 
O 5 HOH A 12 2012 2012 HOH HOH . 
O 5 HOH A 13 2013 2013 HOH HOH . 
O 5 HOH A 14 2014 2014 HOH HOH . 
O 5 HOH A 15 2015 2015 HOH HOH . 
O 5 HOH A 16 2016 2016 HOH HOH . 
O 5 HOH A 17 2017 2017 HOH HOH . 
O 5 HOH A 18 2018 2018 HOH HOH . 
O 5 HOH A 19 2019 2019 HOH HOH . 
O 5 HOH A 20 2020 2020 HOH HOH . 
O 5 HOH A 21 2021 2021 HOH HOH . 
O 5 HOH A 22 2022 2022 HOH HOH . 
O 5 HOH A 23 2023 2023 HOH HOH . 
O 5 HOH A 24 2024 2024 HOH HOH . 
O 5 HOH A 25 2025 2025 HOH HOH . 
O 5 HOH A 26 2026 2026 HOH HOH . 
O 5 HOH A 27 2027 2027 HOH HOH . 
O 5 HOH A 28 2028 2028 HOH HOH . 
O 5 HOH A 29 2029 2029 HOH HOH . 
O 5 HOH A 30 2030 2030 HOH HOH . 
O 5 HOH A 31 2031 2031 HOH HOH . 
O 5 HOH A 32 2032 2032 HOH HOH . 
O 5 HOH A 33 2033 2033 HOH HOH . 
O 5 HOH A 34 2034 2034 HOH HOH . 
O 5 HOH A 35 2035 2035 HOH HOH . 
O 5 HOH A 36 2036 2036 HOH HOH . 
O 5 HOH A 37 2037 2037 HOH HOH . 
O 5 HOH A 38 2038 2038 HOH HOH . 
O 5 HOH A 39 2039 2039 HOH HOH . 
O 5 HOH A 40 2040 2040 HOH HOH . 
O 5 HOH A 41 2041 2041 HOH HOH . 
O 5 HOH A 42 2042 2042 HOH HOH . 
O 5 HOH A 43 2043 2043 HOH HOH . 
O 5 HOH A 44 2044 2044 HOH HOH . 
O 5 HOH A 45 2045 2045 HOH HOH . 
O 5 HOH A 46 2046 2046 HOH HOH . 
O 5 HOH A 47 2047 2047 HOH HOH . 
O 5 HOH A 48 2048 2048 HOH HOH . 
O 5 HOH A 49 2049 2049 HOH HOH . 
O 5 HOH A 50 2050 2050 HOH HOH . 
O 5 HOH A 51 2051 2051 HOH HOH . 
O 5 HOH A 52 2052 2052 HOH HOH . 
O 5 HOH A 53 2053 2053 HOH HOH . 
O 5 HOH A 54 2054 2054 HOH HOH . 
O 5 HOH A 55 2055 2055 HOH HOH . 
O 5 HOH A 56 2056 2056 HOH HOH . 
O 5 HOH A 57 2057 2057 HOH HOH . 
O 5 HOH A 58 2058 2058 HOH HOH . 
O 5 HOH A 59 2059 2059 HOH HOH . 
O 5 HOH A 60 2060 2060 HOH HOH . 
O 5 HOH A 61 2061 2061 HOH HOH . 
O 5 HOH A 62 2062 2062 HOH HOH . 
O 5 HOH A 63 2063 2063 HOH HOH . 
O 5 HOH A 64 2064 2064 HOH HOH . 
O 5 HOH A 65 2065 2065 HOH HOH . 
O 5 HOH A 66 2066 2066 HOH HOH . 
O 5 HOH A 67 2067 2067 HOH HOH . 
O 5 HOH A 68 2068 2068 HOH HOH . 
O 5 HOH A 69 2069 2069 HOH HOH . 
O 5 HOH A 70 2070 2070 HOH HOH . 
O 5 HOH A 71 2071 2071 HOH HOH . 
O 5 HOH A 72 2072 2072 HOH HOH . 
O 5 HOH A 73 2073 2073 HOH HOH . 
O 5 HOH A 74 2074 2074 HOH HOH . 
O 5 HOH A 75 2075 2075 HOH HOH . 
O 5 HOH A 76 2076 2076 HOH HOH . 
O 5 HOH A 77 2077 2077 HOH HOH . 
O 5 HOH A 78 2078 2078 HOH HOH . 
O 5 HOH A 79 2079 2079 HOH HOH . 
O 5 HOH A 80 2080 2080 HOH HOH . 
O 5 HOH A 81 2081 2081 HOH HOH . 
O 5 HOH A 82 2082 2082 HOH HOH . 
O 5 HOH A 83 2083 2083 HOH HOH . 
O 5 HOH A 84 2084 2084 HOH HOH . 
O 5 HOH A 85 2085 2085 HOH HOH . 
O 5 HOH A 86 2086 2086 HOH HOH . 
O 5 HOH A 87 2087 2087 HOH HOH . 
O 5 HOH A 88 2088 2088 HOH HOH . 
O 5 HOH A 89 2089 2089 HOH HOH . 
O 5 HOH A 90 2090 2090 HOH HOH . 
O 5 HOH A 91 2091 2091 HOH HOH . 
O 5 HOH A 92 2092 2092 HOH HOH . 
O 5 HOH A 93 2093 2093 HOH HOH . 
O 5 HOH A 94 2094 2094 HOH HOH . 
O 5 HOH A 95 2095 2095 HOH HOH . 
O 5 HOH A 96 2096 2096 HOH HOH . 
O 5 HOH A 97 2097 2097 HOH HOH . 
O 5 HOH A 98 2098 2098 HOH HOH . 
O 5 HOH A 99 2099 2099 HOH HOH . 
O 5 HOH A 100 2100 2100 HOH HOH . 
O 5 HOH A 101 2101 2101 HOH HOH . 
O 5 HOH A 102 2102 2102 HOH HOH . 
O 5 HOH A 103 2103 2103 HOH HOH . 
O 5 HOH A 104 2104 2104 HOH HOH . 
O 5 HOH A 105 2105 2105 HOH HOH . 
O 5 HOH A 106 2106 2106 HOH HOH . 
O 5 HOH A 107 2107 2107 HOH HOH . 
O 5 HOH A 108 2108 2108 HOH HOH . 
O 5 HOH A 109 2109 2109 HOH HOH . 
O 5 HOH A 110 2110 2110 HOH HOH . 
O 5 HOH A 111 2111 2111 HOH HOH . 
O 5 HOH A 112 2112 2112 HOH HOH . 
O 5 HOH A 113 2113 2113 HOH HOH . 
O 5 HOH A 114 2114 2114 HOH HOH . 
O 5 HOH A 115 2115 2115 HOH HOH . 
O 5 HOH A 116 2116 2116 HOH HOH . 
O 5 HOH A 117 2117 2117 HOH HOH . 
O 5 HOH A 118 2118 2118 HOH HOH . 
O 5 HOH A 119 2119 2119 HOH HOH . 
O 5 HOH A 120 2120 2120 HOH HOH . 
O 5 HOH A 121 2121 2121 HOH HOH . 
O 5 HOH A 122 2122 2122 HOH HOH . 
O 5 HOH A 123 2123 2123 HOH HOH . 
O 5 HOH A 124 2124 2124 HOH HOH . 
O 5 HOH A 125 2125 2125 HOH HOH . 
O 5 HOH A 126 2126 2126 HOH HOH . 
O 5 HOH A 127 2127 2127 HOH HOH . 
O 5 HOH A 128 2128 2128 HOH HOH . 
O 5 HOH A 129 2129 2129 HOH HOH . 
O 5 HOH A 130 2130 2130 HOH HOH . 
O 5 HOH A 131 2131 2131 HOH HOH . 
O 5 HOH A 132 2132 2132 HOH HOH . 
O 5 HOH A 133 2133 2133 HOH HOH . 
O 5 HOH A 134 2134 2134 HOH HOH . 
O 5 HOH A 135 2135 2135 HOH HOH . 
O 5 HOH A 136 2136 2136 HOH HOH . 
O 5 HOH A 137 2137 2137 HOH HOH . 
O 5 HOH A 138 2138 2138 HOH HOH . 
O 5 HOH A 139 2139 2139 HOH HOH . 
P 5 HOH B 1 2001 2001 HOH HOH . 
P 5 HOH B 2 2002 2002 HOH HOH . 
P 5 HOH B 3 2003 2003 HOH HOH . 
P 5 HOH B 4 2004 2004 HOH HOH . 
P 5 HOH B 5 2005 2005 HOH HOH . 
P 5 HOH B 6 2006 2006 HOH HOH . 
P 5 HOH B 7 2007 2007 HOH HOH . 
P 5 HOH B 8 2008 2008 HOH HOH . 
P 5 HOH B 9 2009 2009 HOH HOH . 
P 5 HOH B 10 2010 2010 HOH HOH . 
P 5 HOH B 11 2011 2011 HOH HOH . 
P 5 HOH B 12 2012 2012 HOH HOH . 
P 5 HOH B 13 2013 2013 HOH HOH . 
P 5 HOH B 14 2014 2014 HOH HOH . 
P 5 HOH B 15 2015 2015 HOH HOH . 
P 5 HOH B 16 2016 2016 HOH HOH . 
P 5 HOH B 17 2017 2017 HOH HOH . 
P 5 HOH B 18 2018 2018 HOH HOH . 
P 5 HOH B 19 2019 2019 HOH HOH . 
P 5 HOH B 20 2020 2020 HOH HOH . 
P 5 HOH B 21 2021 2021 HOH HOH . 
P 5 HOH B 22 2022 2022 HOH HOH . 
P 5 HOH B 23 2023 2023 HOH HOH . 
P 5 HOH B 24 2024 2024 HOH HOH . 
P 5 HOH B 25 2025 2025 HOH HOH . 
P 5 HOH B 26 2026 2026 HOH HOH . 
P 5 HOH B 27 2027 2027 HOH HOH . 
P 5 HOH B 28 2028 2028 HOH HOH . 
P 5 HOH B 29 2029 2029 HOH HOH . 
P 5 HOH B 30 2030 2030 HOH HOH . 
P 5 HOH B 31 2031 2031 HOH HOH . 
P 5 HOH B 32 2032 2032 HOH HOH . 
P 5 HOH B 33 2033 2033 HOH HOH . 
P 5 HOH B 34 2034 2034 HOH HOH . 
P 5 HOH B 35 2035 2035 HOH HOH . 
P 5 HOH B 36 2036 2036 HOH HOH . 
P 5 HOH B 37 2037 2037 HOH HOH . 
P 5 HOH B 38 2038 2038 HOH HOH . 
P 5 HOH B 39 2039 2039 HOH HOH . 
P 5 HOH B 40 2040 2040 HOH HOH . 
P 5 HOH B 41 2041 2041 HOH HOH . 
P 5 HOH B 42 2042 2042 HOH HOH . 
P 5 HOH B 43 2043 2043 HOH HOH . 
P 5 HOH B 44 2044 2044 HOH HOH . 
P 5 HOH B 45 2045 2045 HOH HOH . 
P 5 HOH B 46 2046 2046 HOH HOH . 
P 5 HOH B 47 2047 2047 HOH HOH . 
P 5 HOH B 48 2048 2048 HOH HOH . 
P 5 HOH B 49 2049 2049 HOH HOH . 
P 5 HOH B 50 2050 2050 HOH HOH . 
P 5 HOH B 51 2051 2051 HOH HOH . 
P 5 HOH B 52 2052 2052 HOH HOH . 
P 5 HOH B 53 2053 2053 HOH HOH . 
P 5 HOH B 54 2054 2054 HOH HOH . 
P 5 HOH B 55 2055 2055 HOH HOH . 
P 5 HOH B 56 2056 2056 HOH HOH . 
P 5 HOH B 57 2057 2057 HOH HOH . 
P 5 HOH B 58 2058 2058 HOH HOH . 
P 5 HOH B 59 2059 2059 HOH HOH . 
P 5 HOH B 60 2060 2060 HOH HOH . 
P 5 HOH B 61 2061 2061 HOH HOH . 
P 5 HOH B 62 2062 2062 HOH HOH . 
P 5 HOH B 63 2063 2063 HOH HOH . 
P 5 HOH B 64 2064 2064 HOH HOH . 
P 5 HOH B 65 2065 2065 HOH HOH . 
P 5 HOH B 66 2066 2066 HOH HOH . 
P 5 HOH B 67 2067 2067 HOH HOH . 
P 5 HOH B 68 2068 2068 HOH HOH . 
P 5 HOH B 69 2069 2069 HOH HOH . 
P 5 HOH B 70 2070 2070 HOH HOH . 
P 5 HOH B 71 2071 2071 HOH HOH . 
P 5 HOH B 72 2072 2072 HOH HOH . 
P 5 HOH B 73 2073 2073 HOH HOH . 
P 5 HOH B 74 2074 2074 HOH HOH . 
P 5 HOH B 75 2075 2075 HOH HOH . 
P 5 HOH B 76 2076 2076 HOH HOH . 
P 5 HOH B 77 2077 2077 HOH HOH . 
P 5 HOH B 78 2078 2078 HOH HOH . 
P 5 HOH B 79 2079 2079 HOH HOH . 
P 5 HOH B 80 2080 2080 HOH HOH . 
P 5 HOH B 81 2081 2081 HOH HOH . 
P 5 HOH B 82 2082 2082 HOH HOH . 
P 5 HOH B 83 2083 2083 HOH HOH . 
P 5 HOH B 84 2084 2084 HOH HOH . 
P 5 HOH B 85 2085 2085 HOH HOH . 
P 5 HOH B 86 2086 2086 HOH HOH . 
P 5 HOH B 87 2087 2087 HOH HOH . 
P 5 HOH B 88 2088 2088 HOH HOH . 
P 5 HOH B 89 2089 2089 HOH HOH . 
P 5 HOH B 90 2090 2090 HOH HOH . 
P 5 HOH B 91 2091 2091 HOH HOH . 
P 5 HOH B 92 2092 2092 HOH HOH . 
P 5 HOH B 93 2093 2093 HOH HOH . 
P 5 HOH B 94 2094 2094 HOH HOH . 
P 5 HOH B 95 2095 2095 HOH HOH . 
P 5 HOH B 96 2096 2096 HOH HOH . 
P 5 HOH B 97 2097 2097 HOH HOH . 
P 5 HOH B 98 2098 2098 HOH HOH . 
P 5 HOH B 99 2099 2099 HOH HOH . 
P 5 HOH B 100 2100 2100 HOH HOH . 
P 5 HOH B 101 2101 2101 HOH HOH . 
P 5 HOH B 102 2102 2102 HOH HOH . 
P 5 HOH B 103 2103 2103 HOH HOH . 
P 5 HOH B 104 2104 2104 HOH HOH . 
P 5 HOH B 105 2105 2105 HOH HOH . 
P 5 HOH B 106 2106 2106 HOH HOH . 
P 5 HOH B 107 2107 2107 HOH HOH . 
P 5 HOH B 108 2108 2108 HOH HOH . 
P 5 HOH B 109 2109 2109 HOH HOH . 
P 5 HOH B 110 2110 2110 HOH HOH . 
P 5 HOH B 111 2111 2111 HOH HOH . 
P 5 HOH B 112 2112 2112 HOH HOH . 
P 5 HOH B 113 2113 2113 HOH HOH . 
P 5 HOH B 114 2114 2114 HOH HOH . 
P 5 HOH B 115 2115 2115 HOH HOH . 
P 5 HOH B 116 2116 2116 HOH HOH . 
P 5 HOH B 117 2117 2117 HOH HOH . 
P 5 HOH B 118 2118 2118 HOH HOH . 
P 5 HOH B 119 2119 2119 HOH HOH . 
P 5 HOH B 120 2120 2120 HOH HOH . 
P 5 HOH B 121 2121 2121 HOH HOH . 
P 5 HOH B 122 2122 2122 HOH HOH . 
P 5 HOH B 123 2123 2123 HOH HOH . 
P 5 HOH B 124 2124 2124 HOH HOH . 
P 5 HOH B 125 2125 2125 HOH HOH . 
P 5 HOH B 126 2126 2126 HOH HOH . 
P 5 HOH B 127 2127 2127 HOH HOH . 
P 5 HOH B 128 2128 2128 HOH HOH . 
P 5 HOH B 129 2129 2129 HOH HOH . 
Q 5 HOH C 1 2001 2001 HOH HOH . 
Q 5 HOH C 2 2002 2002 HOH HOH . 
Q 5 HOH C 3 2003 2003 HOH HOH . 
Q 5 HOH C 4 2004 2004 HOH HOH . 
Q 5 HOH C 5 2005 2005 HOH HOH . 
Q 5 HOH C 6 2006 2006 HOH HOH . 
Q 5 HOH C 7 2007 2007 HOH HOH . 
Q 5 HOH C 8 2008 2008 HOH HOH . 
Q 5 HOH C 9 2009 2009 HOH HOH . 
Q 5 HOH C 10 2010 2010 HOH HOH . 
Q 5 HOH C 11 2011 2011 HOH HOH . 
Q 5 HOH C 12 2012 2012 HOH HOH . 
Q 5 HOH C 13 2013 2013 HOH HOH . 
Q 5 HOH C 14 2014 2014 HOH HOH . 
Q 5 HOH C 15 2015 2015 HOH HOH . 
Q 5 HOH C 16 2016 2016 HOH HOH . 
Q 5 HOH C 17 2017 2017 HOH HOH . 
Q 5 HOH C 18 2018 2018 HOH HOH . 
Q 5 HOH C 19 2019 2019 HOH HOH . 
Q 5 HOH C 20 2020 2020 HOH HOH . 
Q 5 HOH C 21 2021 2021 HOH HOH . 
Q 5 HOH C 22 2022 2022 HOH HOH . 
Q 5 HOH C 23 2023 2023 HOH HOH . 
Q 5 HOH C 24 2024 2024 HOH HOH . 
Q 5 HOH C 25 2025 2025 HOH HOH . 
Q 5 HOH C 26 2026 2026 HOH HOH . 
Q 5 HOH C 27 2027 2027 HOH HOH . 
Q 5 HOH C 28 2028 2028 HOH HOH . 
Q 5 HOH C 29 2029 2029 HOH HOH . 
Q 5 HOH C 30 2030 2030 HOH HOH . 
Q 5 HOH C 31 2031 2031 HOH HOH . 
Q 5 HOH C 32 2032 2032 HOH HOH . 
Q 5 HOH C 33 2033 2033 HOH HOH . 
Q 5 HOH C 34 2034 2034 HOH HOH . 
Q 5 HOH C 35 2035 2035 HOH HOH . 
Q 5 HOH C 36 2036 2036 HOH HOH . 
Q 5 HOH C 37 2037 2037 HOH HOH . 
Q 5 HOH C 38 2038 2038 HOH HOH . 
Q 5 HOH C 39 2039 2039 HOH HOH . 
Q 5 HOH C 40 2040 2040 HOH HOH . 
Q 5 HOH C 41 2041 2041 HOH HOH . 
Q 5 HOH C 42 2042 2042 HOH HOH . 
Q 5 HOH C 43 2043 2043 HOH HOH . 
Q 5 HOH C 44 2044 2044 HOH HOH . 
Q 5 HOH C 45 2045 2045 HOH HOH . 
Q 5 HOH C 46 2046 2046 HOH HOH . 
Q 5 HOH C 47 2047 2047 HOH HOH . 
Q 5 HOH C 48 2048 2048 HOH HOH . 
Q 5 HOH C 49 2049 2049 HOH HOH . 
Q 5 HOH C 50 2050 2050 HOH HOH . 
Q 5 HOH C 51 2051 2051 HOH HOH . 
Q 5 HOH C 52 2052 2052 HOH HOH . 
Q 5 HOH C 53 2053 2053 HOH HOH . 
Q 5 HOH C 54 2054 2054 HOH HOH . 
Q 5 HOH C 55 2055 2055 HOH HOH . 
Q 5 HOH C 56 2056 2056 HOH HOH . 
Q 5 HOH C 57 2057 2057 HOH HOH . 
Q 5 HOH C 58 2058 2058 HOH HOH . 
Q 5 HOH C 59 2059 2059 HOH HOH . 
Q 5 HOH C 60 2060 2060 HOH HOH . 
Q 5 HOH C 61 2061 2061 HOH HOH . 
Q 5 HOH C 62 2062 2062 HOH HOH . 
Q 5 HOH C 63 2063 2063 HOH HOH . 
Q 5 HOH C 64 2064 2064 HOH HOH . 
Q 5 HOH C 65 2065 2065 HOH HOH . 
Q 5 HOH C 66 2066 2066 HOH HOH . 
Q 5 HOH C 67 2067 2067 HOH HOH . 
Q 5 HOH C 68 2068 2068 HOH HOH . 
Q 5 HOH C 69 2069 2069 HOH HOH . 
Q 5 HOH C 70 2070 2070 HOH HOH . 
Q 5 HOH C 71 2071 2071 HOH HOH . 
Q 5 HOH C 72 2072 2072 HOH HOH . 
Q 5 HOH C 73 2073 2073 HOH HOH . 
Q 5 HOH C 74 2074 2074 HOH HOH . 
Q 5 HOH C 75 2075 2075 HOH HOH . 
Q 5 HOH C 76 2076 2076 HOH HOH . 
Q 5 HOH C 77 2077 2077 HOH HOH . 
Q 5 HOH C 78 2078 2078 HOH HOH . 
Q 5 HOH C 79 2079 2079 HOH HOH . 
Q 5 HOH C 80 2080 2080 HOH HOH . 
Q 5 HOH C 81 2081 2081 HOH HOH . 
Q 5 HOH C 82 2082 2082 HOH HOH . 
Q 5 HOH C 83 2083 2083 HOH HOH . 
Q 5 HOH C 84 2084 2084 HOH HOH . 
Q 5 HOH C 85 2085 2085 HOH HOH . 
Q 5 HOH C 86 2086 2086 HOH HOH . 
Q 5 HOH C 87 2087 2087 HOH HOH . 
Q 5 HOH C 88 2088 2088 HOH HOH . 
Q 5 HOH C 89 2089 2089 HOH HOH . 
Q 5 HOH C 90 2090 2090 HOH HOH . 
Q 5 HOH C 91 2091 2091 HOH HOH . 
Q 5 HOH C 92 2092 2092 HOH HOH . 
Q 5 HOH C 93 2093 2093 HOH HOH . 
Q 5 HOH C 94 2094 2094 HOH HOH . 
Q 5 HOH C 95 2095 2095 HOH HOH . 
Q 5 HOH C 96 2096 2096 HOH HOH . 
Q 5 HOH C 97 2097 2097 HOH HOH . 
Q 5 HOH C 98 2098 2098 HOH HOH . 
Q 5 HOH C 99 2099 2099 HOH HOH . 
Q 5 HOH C 100 2100 2100 HOH HOH . 
Q 5 HOH C 101 2101 2101 HOH HOH . 
Q 5 HOH C 102 2102 2102 HOH HOH . 
Q 5 HOH C 103 2103 2103 HOH HOH . 
Q 5 HOH C 104 2104 2104 HOH HOH . 
Q 5 HOH C 105 2105 2105 HOH HOH . 
Q 5 HOH C 106 2106 2106 HOH HOH . 
Q 5 HOH C 107 2107 2107 HOH HOH . 
Q 5 HOH C 108 2108 2108 HOH HOH . 
Q 5 HOH C 109 2109 2109 HOH HOH . 
Q 5 HOH C 110 2110 2110 HOH HOH . 
Q 5 HOH C 111 2111 2111 HOH HOH . 
Q 5 HOH C 112 2112 2112 HOH HOH . 
Q 5 HOH C 113 2113 2113 HOH HOH . 
Q 5 HOH C 114 2114 2114 HOH HOH . 
Q 5 HOH C 115 2115 2115 HOH HOH . 
Q 5 HOH C 116 2116 2116 HOH HOH . 
Q 5 HOH C 117 2117 2117 HOH HOH . 
Q 5 HOH C 118 2118 2118 HOH HOH . 
Q 5 HOH C 119 2119 2119 HOH HOH . 
Q 5 HOH C 120 2120 2120 HOH HOH . 
Q 5 HOH C 121 2121 2121 HOH HOH . 
Q 5 HOH C 122 2122 2122 HOH HOH . 
Q 5 HOH C 123 2123 2123 HOH HOH . 
Q 5 HOH C 124 2124 2124 HOH HOH . 
Q 5 HOH C 125 2125 2125 HOH HOH . 
Q 5 HOH C 126 2126 2126 HOH HOH . 
Q 5 HOH C 127 2127 2127 HOH HOH . 
Q 5 HOH C 128 2128 2128 HOH HOH . 
Q 5 HOH C 129 2129 2129 HOH HOH . 
Q 5 HOH C 130 2130 2130 HOH HOH . 
Q 5 HOH C 131 2131 2131 HOH HOH . 
Q 5 HOH C 132 2132 2132 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 UDP . . . D 2 22.747 26.287 34.959 1 37.28 ? N1 UDP 1543 A 1 
HETATM 2 C C2 UDP . . . D 2 23.27 26.878 36.116 1 35.95 ? C2 UDP 1543 A 1 
HETATM 3 N N3 UDP . . . D 2 22.76 28.067 36.574 1 35.72 ? N3 UDP 1543 A 1 
HETATM 4 C C4 UDP . . . D 2 21.719 28.675 35.905 1 37.71 ? C4 UDP 1543 A 1 
HETATM 5 C C5 UDP . . . D 2 21.171 28.092 34.748 1 36.83 ? C5 UDP 1543 A 1 
HETATM 6 C C6 UDP . . . D 2 21.703 26.889 34.278 1 36.59 ? C6 UDP 1543 A 1 
HETATM 7 O O2 UDP . . . D 2 24.197 26.401 36.747 1 34.57 ? O2 UDP 1543 A 1 
HETATM 8 O O4 UDP . . . D 2 21.293 29.737 36.35 1 36.8 ? O4 UDP 1543 A 1 
HETATM 9 C C1' UDP . . . D 2 23.299 25.012 34.466 1 36.39 ? C1' UDP 1543 A 1 
HETATM 10 C C2' UDP . . . D 2 22.811 23.905 35.369 1 35.22 ? C2' UDP 1543 A 1 
HETATM 11 O O2' UDP . . . D 2 23.918 23.049 35.561 1 36.04 ? O2' UDP 1543 A 1 
HETATM 12 C C3' UDP . . . D 2 21.711 23.259 34.546 1 34.68 ? C3' UDP 1543 A 1 
HETATM 13 C C4' UDP . . . D 2 22.285 23.389 33.137 1 36.69 ? C4' UDP 1543 A 1 
HETATM 14 O O4' UDP . . . D 2 22.858 24.68 33.148 1 37.8 ? O4' UDP 1543 A 1 
HETATM 15 O O3' UDP . . . D 2 21.454 21.944 34.969 1 32.42 ? O3' UDP 1543 A 1 
HETATM 16 C C5' UDP . . . D 2 21.292 23.31 31.992 1 38.71 ? C5' UDP 1543 A 1 
HETATM 17 O O5' UDP . . . D 2 20.46 24.434 32.079 1 40.25 ? O5' UDP 1543 A 1 
HETATM 18 P PA UDP . . . D 2 18.987 24.307 31.492 1 41.75 ? PA UDP 1543 A 1 
HETATM 19 O O1A UDP . . . D 2 18.056 25.348 32.005 1 42.02 ? O1A UDP 1543 A 1 
HETATM 20 O O2A UDP . . . D 2 18.389 22.963 31.718 1 37.96 ? O2A UDP 1543 A 1 
HETATM 21 O O3A UDP . . . D 2 19.371 24.654 29.97 1 45.03 ? O3A UDP 1543 A 1 
HETATM 22 P PB UDP . . . D 2 18.582 24.035 28.702 1 50.07 ? PB UDP 1543 A 1 
HETATM 23 O O1B UDP . . . D 2 19.436 24.235 27.499 1 48.44 ? O1B UDP 1543 A 1 
HETATM 24 O O2B UDP . . . D 2 18.354 22.571 28.89 1 48.31 ? O2B UDP 1543 A 1 
HETATM 25 O O3B UDP . . . D 2 17.27 24.713 28.593 1 48.59 ? O3B UDP 1543 A 1 
#
_model_server_stats.io_time_ms              22 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    46 
_model_server_stats.query_time_ms           701 
_model_server_stats.encode_time_ms          14 
_model_server_stats.element_count           25 
#