data_2VN0 # _model_server_result.job_id JsIp9RXaGxPUA1pEZeLwXQ _model_server_result.datetime_utc '2024-10-17 14:14:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2vn0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":502}' # _entry.id 2VN0 # _exptl.entry_id 2VN0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 256.424 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PALMITIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2VN0 _cell.length_a 74.2 _cell.length_b 136.09 _cell.length_c 163.24 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2VN0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 417 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 435 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id FE _struct_conn.ptnr2_label_comp_id HEM _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id HEM _struct_conn.ptnr2_auth_seq_id 500 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.269 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C16 H32 O2' _chem_comp.formula_weight 256.424 _chem_comp.id PLM _chem_comp.mon_nstd_flag . _chem_comp.name 'PALMITIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PLM sing 342 n n C1 O2 PLM doub 343 n n C1 C2 PLM sing 344 n n O1 H PLM sing 345 n n C2 C3 PLM sing 346 n n C2 H21 PLM sing 347 n n C2 H22 PLM sing 348 n n C3 C4 PLM sing 349 n n C3 H31 PLM sing 350 n n C3 H32 PLM sing 351 n n C4 C5 PLM sing 352 n n C4 H41 PLM sing 353 n n C4 H42 PLM sing 354 n n C5 C6 PLM sing 355 n n C5 H51 PLM sing 356 n n C5 H52 PLM sing 357 n n C6 C7 PLM sing 358 n n C6 H61 PLM sing 359 n n C6 H62 PLM sing 360 n n C7 C8 PLM sing 361 n n C7 H71 PLM sing 362 n n C7 H72 PLM sing 363 n n C8 C9 PLM sing 364 n n C8 H81 PLM sing 365 n n C8 H82 PLM sing 366 n n C9 CA PLM sing 367 n n C9 H91 PLM sing 368 n n C9 H92 PLM sing 369 n n CA CB PLM sing 370 n n CA HA1 PLM sing 371 n n CA HA2 PLM sing 372 n n CB CC PLM sing 373 n n CB HB1 PLM sing 374 n n CB HB2 PLM sing 375 n n CC CD PLM sing 376 n n CC HC1 PLM sing 377 n n CC HC2 PLM sing 378 n n CD CE PLM sing 379 n n CD HD1 PLM sing 380 n n CD HD2 PLM sing 381 n n CE CF PLM sing 382 n n CE HE1 PLM sing 383 n n CE HE2 PLM sing 384 n n CF CG PLM sing 385 n n CF HF1 PLM sing 386 n n CF HF2 PLM sing 387 n n CG HG1 PLM sing 388 n n CG HG2 PLM sing 389 n n CG HG3 PLM sing 390 n n # _atom_sites.entry_id 2VN0 _atom_sites.fract_transf_matrix[1][1] 0.013477 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007348 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006126 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 500 500 HEM HEM . C 3 TDZ A 1 501 501 TDZ TDZ . D 4 PLM A 1 502 502 PLM PLM . E 5 HOH A 1 2001 2001 HOH HOH . E 5 HOH A 2 2002 2002 HOH HOH . E 5 HOH A 3 2003 2003 HOH HOH . E 5 HOH A 4 2004 2004 HOH HOH . E 5 HOH A 5 2005 2005 HOH HOH . E 5 HOH A 6 2006 2006 HOH HOH . E 5 HOH A 7 2007 2007 HOH HOH . E 5 HOH A 8 2008 2008 HOH HOH . E 5 HOH A 9 2009 2009 HOH HOH . E 5 HOH A 10 2010 2010 HOH HOH . E 5 HOH A 11 2011 2011 HOH HOH . E 5 HOH A 12 2012 2012 HOH HOH . E 5 HOH A 13 2013 2013 HOH HOH . E 5 HOH A 14 2014 2014 HOH HOH . E 5 HOH A 15 2015 2015 HOH HOH . E 5 HOH A 16 2016 2016 HOH HOH . E 5 HOH A 17 2017 2017 HOH HOH . E 5 HOH A 18 2018 2018 HOH HOH . E 5 HOH A 19 2019 2019 HOH HOH . E 5 HOH A 20 2020 2020 HOH HOH . E 5 HOH A 21 2021 2021 HOH HOH . E 5 HOH A 22 2022 2022 HOH HOH . E 5 HOH A 23 2023 2023 HOH HOH . E 5 HOH A 24 2024 2024 HOH HOH . E 5 HOH A 25 2025 2025 HOH HOH . E 5 HOH A 26 2026 2026 HOH HOH . E 5 HOH A 27 2027 2027 HOH HOH . E 5 HOH A 28 2028 2028 HOH HOH . E 5 HOH A 29 2029 2029 HOH HOH . E 5 HOH A 30 2030 2030 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PLM . . . D 4 34.476 4.562 -21.019 1 65.9 ? C1 PLM 502 A 1 HETATM 2 O O1 PLM . . . D 4 34.24 5.673 -20.541 1 69.25 ? O1 PLM 502 A 1 HETATM 3 O O2 PLM . . . D 4 33.543 3.843 -21.363 1 65.82 ? O2 PLM 502 A 1 HETATM 4 C C2 PLM . . . D 4 35.921 4.089 -21.186 1 64.38 ? C2 PLM 502 A 1 HETATM 5 C C3 PLM . . . D 4 36.088 2.669 -20.641 1 61.79 ? C3 PLM 502 A 1 HETATM 6 C C4 PLM . . . D 4 37.467 2.094 -20.969 1 61.32 ? C4 PLM 502 A 1 HETATM 7 C C5 PLM . . . D 4 38.601 2.819 -20.241 1 59.77 ? C5 PLM 502 A 1 HETATM 8 C C6 PLM . . . D 4 39.935 2.15 -20.573 1 58.39 ? C6 PLM 502 A 1 HETATM 9 C C7 PLM . . . D 4 41.072 2.738 -19.737 1 56.85 ? C7 PLM 502 A 1 HETATM 10 C C8 PLM . . . D 4 42.38 1.993 -20.012 1 55.65 ? C8 PLM 502 A 1 HETATM 11 C C9 PLM . . . D 4 43.465 2.471 -19.046 1 56.33 ? C9 PLM 502 A 1 HETATM 12 C CA PLM . . . D 4 44.771 1.685 -19.185 1 54.85 ? CA PLM 502 A 1 HETATM 13 C CB PLM . . . D 4 45.476 1.962 -20.514 1 54.7 ? CB PLM 502 A 1 HETATM 14 C CC PLM . . . D 4 46.889 1.379 -20.479 1 54.45 ? CC PLM 502 A 1 HETATM 15 C CD PLM . . . D 4 47.675 1.706 -21.75 1 52.65 ? CD PLM 502 A 1 HETATM 16 C CE PLM . . . D 4 49.128 1.259 -21.582 1 52.84 ? CE PLM 502 A 1 HETATM 17 C CF PLM . . . D 4 49.964 1.587 -22.821 1 53.82 ? CF PLM 502 A 1 HETATM 18 C CG PLM . . . D 4 51.422 1.176 -22.608 1 55.49 ? CG PLM 502 A 1 # _model_server_stats.io_time_ms 101 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 18 #