data_2VN2 # _model_server_result.job_id 5hyNuejY_dYfH4nO2c96lg _model_server_result.datetime_utc '2025-03-05 01:18:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2vn2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1120}' # _entry.id 2VN2 # _exptl.entry_id 2VN2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2VN2 _cell.length_a 116.514 _cell.length_b 124.707 _cell.length_c 157.23 _cell.Z_PDB 64 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2VN2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 22 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'F 2 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA tetrameric 4 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,G,I,K 1 1,2 B,D,F,H,J,L 2 1,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 116.514 0 0 3 'crystal symmetry operation' 11_655 -x+3/2,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 174.771 0 78.615 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A ND1 HIS 24 A HIS 24 1_555 E MG MG . A MG 1120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc2 A OE1 GLN 27 A GLN 27 1_555 E MG MG . A MG 1120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.446 ? metalc ? metalc3 A NE2 GLN 27 A GLN 27 1_555 E MG MG . A MG 1120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.597 ? metalc ? metalc4 A NE2 HIS 109 A HIS 109 1_555 E MG MG . A MG 1120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? metalc ? metalc5 A OE1 GLN 113 A GLN 113 1_555 E MG MG . A MG 1120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? metalc ? metalc6 A NE2 GLN 113 A GLN 113 1_555 E MG MG . A MG 1120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc7 B NE2 HIS 24 B HIS 24 1_555 F MG MG . B MG 1120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.619 ? metalc ? metalc8 B OE1 GLN 27 B GLN 27 1_555 F MG MG . B MG 1120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.381 ? metalc ? metalc9 B NE2 HIS 109 B HIS 109 1_555 F MG MG . B MG 1120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.823 ? metalc ? metalc10 B OE1 GLN 113 B GLN 113 1_555 F MG MG . B MG 1120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? metalc ? metalc11 B NE2 GLN 113 B GLN 113 1_555 F MG MG . B MG 1120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? metalc ? metalc12 C ND1 HIS 24 C HIS 24 1_555 G MG MG . C MG 1120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? metalc ? metalc13 C NE2 GLN 27 C GLN 27 1_555 G MG MG . C MG 1120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc14 C OE1 GLN 27 C GLN 27 1_555 G MG MG . C MG 1120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? metalc ? metalc15 C NE2 HIS 109 C HIS 109 1_555 G MG MG . C MG 1120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? metalc ? metalc16 C OE1 GLN 113 C GLN 113 1_555 G MG MG . C MG 1120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc17 D ND1 HIS 24 D HIS 24 1_555 H MG MG . D MG 1120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.475 ? metalc ? metalc18 D NE2 GLN 27 D GLN 27 1_555 H MG MG . D MG 1120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? metalc ? metalc19 D OE1 GLN 27 D GLN 27 1_555 H MG MG . D MG 1120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.138 ? metalc ? metalc20 D NE2 HIS 109 D HIS 109 1_555 H MG MG . D MG 1120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.143 ? metalc ? metalc21 D OE1 GLN 113 D GLN 113 1_555 H MG MG . D MG 1120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2VN2 _atom_sites.fract_transf_matrix[1][1] 0.008583 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008019 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00636 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 MG A 1 1120 1120 MG MG . F 2 MG B 1 1120 1120 MG MG . G 2 MG C 1 1120 1120 MG MG . H 2 MG D 1 1120 1120 MG MG . I 3 HOH A 1 2001 2001 HOH HOH . I 3 HOH A 2 2002 2002 HOH HOH . I 3 HOH A 3 2003 2003 HOH HOH . I 3 HOH A 4 2004 2004 HOH HOH . I 3 HOH A 5 2005 2005 HOH HOH . I 3 HOH A 6 2006 2006 HOH HOH . I 3 HOH A 7 2007 2007 HOH HOH . I 3 HOH A 8 2008 2008 HOH HOH . I 3 HOH A 9 2009 2009 HOH HOH . I 3 HOH A 10 2010 2010 HOH HOH . I 3 HOH A 11 2011 2011 HOH HOH . I 3 HOH A 12 2012 2012 HOH HOH . I 3 HOH A 13 2013 2013 HOH HOH . I 3 HOH A 14 2014 2014 HOH HOH . I 3 HOH A 15 2015 2015 HOH HOH . I 3 HOH A 16 2016 2016 HOH HOH . I 3 HOH A 17 2017 2017 HOH HOH . I 3 HOH A 18 2018 2018 HOH HOH . I 3 HOH A 19 2019 2019 HOH HOH . I 3 HOH A 20 2020 2020 HOH HOH . I 3 HOH A 21 2021 2021 HOH HOH . I 3 HOH A 22 2022 2022 HOH HOH . I 3 HOH A 23 2023 2023 HOH HOH . I 3 HOH A 24 2024 2024 HOH HOH . I 3 HOH A 25 2025 2025 HOH HOH . I 3 HOH A 26 2026 2026 HOH HOH . I 3 HOH A 27 2027 2027 HOH HOH . I 3 HOH A 28 2028 2028 HOH HOH . I 3 HOH A 29 2029 2029 HOH HOH . I 3 HOH A 30 2030 2030 HOH HOH . I 3 HOH A 31 2031 2031 HOH HOH . I 3 HOH A 32 2032 2032 HOH HOH . I 3 HOH A 33 2033 2033 HOH HOH . I 3 HOH A 34 2034 2034 HOH HOH . I 3 HOH A 35 2035 2035 HOH HOH . I 3 HOH A 36 2036 2036 HOH HOH . I 3 HOH A 37 2037 2037 HOH HOH . I 3 HOH A 38 2038 2038 HOH HOH . I 3 HOH A 39 2039 2039 HOH HOH . J 3 HOH B 1 2001 2001 HOH HOH . J 3 HOH B 2 2002 2002 HOH HOH . J 3 HOH B 3 2003 2003 HOH HOH . J 3 HOH B 4 2004 2004 HOH HOH . J 3 HOH B 5 2005 2005 HOH HOH . J 3 HOH B 6 2006 2006 HOH HOH . J 3 HOH B 7 2007 2007 HOH HOH . J 3 HOH B 8 2008 2008 HOH HOH . J 3 HOH B 9 2009 2009 HOH HOH . J 3 HOH B 10 2010 2010 HOH HOH . J 3 HOH B 11 2011 2011 HOH HOH . J 3 HOH B 12 2012 2012 HOH HOH . J 3 HOH B 13 2013 2013 HOH HOH . J 3 HOH B 14 2014 2014 HOH HOH . J 3 HOH B 15 2015 2015 HOH HOH . J 3 HOH B 16 2016 2016 HOH HOH . J 3 HOH B 17 2017 2017 HOH HOH . J 3 HOH B 18 2018 2018 HOH HOH . J 3 HOH B 19 2019 2019 HOH HOH . J 3 HOH B 20 2020 2020 HOH HOH . J 3 HOH B 21 2021 2021 HOH HOH . J 3 HOH B 22 2022 2022 HOH HOH . J 3 HOH B 23 2023 2023 HOH HOH . J 3 HOH B 24 2024 2024 HOH HOH . J 3 HOH B 25 2025 2025 HOH HOH . J 3 HOH B 26 2026 2026 HOH HOH . J 3 HOH B 27 2027 2027 HOH HOH . J 3 HOH B 28 2028 2028 HOH HOH . J 3 HOH B 29 2029 2029 HOH HOH . J 3 HOH B 30 2030 2030 HOH HOH . J 3 HOH B 31 2031 2031 HOH HOH . J 3 HOH B 32 2032 2032 HOH HOH . J 3 HOH B 33 2033 2033 HOH HOH . J 3 HOH B 34 2034 2034 HOH HOH . J 3 HOH B 35 2035 2035 HOH HOH . J 3 HOH B 36 2036 2036 HOH HOH . J 3 HOH B 37 2037 2037 HOH HOH . J 3 HOH B 38 2038 2038 HOH HOH . J 3 HOH B 39 2039 2039 HOH HOH . J 3 HOH B 40 2040 2040 HOH HOH . J 3 HOH B 41 2041 2041 HOH HOH . J 3 HOH B 42 2042 2042 HOH HOH . K 3 HOH C 1 2001 2001 HOH HOH . K 3 HOH C 2 2002 2002 HOH HOH . K 3 HOH C 3 2003 2003 HOH HOH . K 3 HOH C 4 2004 2004 HOH HOH . K 3 HOH C 5 2005 2005 HOH HOH . K 3 HOH C 6 2006 2006 HOH HOH . K 3 HOH C 7 2007 2007 HOH HOH . K 3 HOH C 8 2008 2008 HOH HOH . K 3 HOH C 9 2009 2009 HOH HOH . K 3 HOH C 10 2010 2010 HOH HOH . K 3 HOH C 11 2011 2011 HOH HOH . K 3 HOH C 12 2012 2012 HOH HOH . K 3 HOH C 13 2013 2013 HOH HOH . K 3 HOH C 14 2014 2014 HOH HOH . K 3 HOH C 15 2015 2015 HOH HOH . K 3 HOH C 16 2016 2016 HOH HOH . K 3 HOH C 17 2017 2017 HOH HOH . K 3 HOH C 18 2018 2018 HOH HOH . K 3 HOH C 19 2019 2019 HOH HOH . K 3 HOH C 20 2020 2020 HOH HOH . K 3 HOH C 21 2021 2021 HOH HOH . K 3 HOH C 22 2022 2022 HOH HOH . K 3 HOH C 23 2023 2023 HOH HOH . K 3 HOH C 24 2024 2024 HOH HOH . K 3 HOH C 25 2025 2025 HOH HOH . K 3 HOH C 26 2026 2026 HOH HOH . K 3 HOH C 27 2027 2027 HOH HOH . K 3 HOH C 28 2028 2028 HOH HOH . K 3 HOH C 29 2029 2029 HOH HOH . K 3 HOH C 30 2030 2030 HOH HOH . K 3 HOH C 31 2031 2031 HOH HOH . K 3 HOH C 32 2032 2032 HOH HOH . K 3 HOH C 33 2033 2033 HOH HOH . K 3 HOH C 34 2034 2034 HOH HOH . K 3 HOH C 35 2035 2035 HOH HOH . K 3 HOH C 36 2036 2036 HOH HOH . K 3 HOH C 37 2037 2037 HOH HOH . K 3 HOH C 38 2038 2038 HOH HOH . K 3 HOH C 39 2039 2039 HOH HOH . K 3 HOH C 40 2040 2040 HOH HOH . K 3 HOH C 41 2041 2041 HOH HOH . K 3 HOH C 42 2042 2042 HOH HOH . K 3 HOH C 43 2043 2043 HOH HOH . K 3 HOH C 44 2044 2044 HOH HOH . K 3 HOH C 45 2045 2045 HOH HOH . L 3 HOH D 1 2001 2001 HOH HOH . L 3 HOH D 2 2002 2002 HOH HOH . L 3 HOH D 3 2003 2003 HOH HOH . L 3 HOH D 4 2004 2004 HOH HOH . L 3 HOH D 5 2005 2005 HOH HOH . L 3 HOH D 6 2006 2006 HOH HOH . L 3 HOH D 7 2007 2007 HOH HOH . L 3 HOH D 8 2008 2008 HOH HOH . L 3 HOH D 9 2009 2009 HOH HOH . L 3 HOH D 10 2010 2010 HOH HOH . L 3 HOH D 11 2011 2011 HOH HOH . L 3 HOH D 12 2012 2012 HOH HOH . L 3 HOH D 13 2013 2013 HOH HOH . L 3 HOH D 14 2014 2014 HOH HOH . L 3 HOH D 15 2015 2015 HOH HOH . L 3 HOH D 16 2016 2016 HOH HOH . L 3 HOH D 17 2017 2017 HOH HOH . L 3 HOH D 18 2018 2018 HOH HOH . L 3 HOH D 19 2019 2019 HOH HOH . L 3 HOH D 20 2020 2020 HOH HOH . L 3 HOH D 21 2021 2021 HOH HOH . L 3 HOH D 22 2022 2022 HOH HOH . L 3 HOH D 23 2023 2023 HOH HOH . L 3 HOH D 24 2024 2024 HOH HOH . L 3 HOH D 25 2025 2025 HOH HOH . L 3 HOH D 26 2026 2026 HOH HOH . L 3 HOH D 27 2027 2027 HOH HOH . L 3 HOH D 28 2028 2028 HOH HOH . L 3 HOH D 29 2029 2029 HOH HOH . L 3 HOH D 30 2030 2030 HOH HOH . L 3 HOH D 31 2031 2031 HOH HOH . L 3 HOH D 32 2032 2032 HOH HOH . L 3 HOH D 33 2033 2033 HOH HOH . L 3 HOH D 34 2034 2034 HOH HOH . L 3 HOH D 35 2035 2035 HOH HOH . L 3 HOH D 36 2036 2036 HOH HOH . L 3 HOH D 37 2037 2037 HOH HOH . L 3 HOH D 38 2038 2038 HOH HOH . L 3 HOH D 39 2039 2039 HOH HOH . L 3 HOH D 40 2040 2040 HOH HOH . L 3 HOH D 41 2041 2041 HOH HOH . L 3 HOH D 42 2042 2042 HOH HOH . L 3 HOH D 43 2043 2043 HOH HOH . L 3 HOH D 44 2044 2044 HOH HOH . L 3 HOH D 45 2045 2045 HOH HOH . L 3 HOH D 46 2046 2046 HOH HOH . L 3 HOH D 47 2047 2047 HOH HOH . L 3 HOH D 48 2048 2048 HOH HOH . L 3 HOH D 49 2049 2049 HOH HOH . L 3 HOH D 50 2050 2050 HOH HOH . L 3 HOH D 51 2051 2051 HOH HOH . L 3 HOH D 52 2052 2052 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 2 _atom_site.Cartn_x 75.761 _atom_site.Cartn_y -7.6 _atom_site.Cartn_z 55.975 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 21.76 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 1120 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #