data_2VN9
#
_model_server_result.job_id            OgITyWWrMb2rrSnHGIo1UQ 
_model_server_result.datetime_utc      '2024-11-28 22:04:59' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2vn9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":1310}' 
#
_entry.id    2VN9 
#
_exptl.entry_id    2VN9 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              381.433 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '[4-({4-[(5-CYCLOPROPYL-1H-PYRAZOL-3-YL)AMINO]QUINAZOLIN-2-YL}IMINO)CYCLOHEXA-2,5-DIEN-1-YL]ACETONITRILE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            2VN9 
_cell.length_a            68.276 
_cell.length_b            68.276 
_cell.length_c            313.45 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2VN9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,K 1 1 
B,H,I,J,L 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 G N N 
? 5 H N N 
#
_chem_comp.formula           'C22 H19 N7' 
_chem_comp.formula_weight    381.433 
_chem_comp.id                GVD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '[4-({4-[(5-CYCLOPROPYL-1H-PYRAZOL-3-YL)AMINO]QUINAZOLIN-2-YL}IMINO)CYCLOHEXA-2,5-DIEN-1-YL]ACETONITRILE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAL CAM GVD sing 162 n n 
CAL CBB GVD sing 163 n n 
CAM CBB GVD sing 164 n n 
CBB CAX GVD sing 165 n n 
CAX CAK GVD doub 166 n n 
CAX NAS GVD sing 167 n n 
NAS NAN GVD sing 168 n n 
CAK CAV GVD sing 169 n n 
NAN CAV GVD doub 170 n n 
CAV NAR GVD sing 171 n n 
NAR C6 GVD sing 172 n n 
C6 N1 GVD doub 173 n n 
C6 C5 GVD sing 174 n n 
C5 CAJ GVD doub 175 n n 
CAJ CAD GVD sing 176 n n 
CAD CAC GVD doub 177 n n 
CAC CAI GVD sing 178 n n 
C5 C4 GVD sing 179 n n 
CAI C4 GVD doub 180 n n 
C4 N3 GVD sing 181 n n 
N1 C2 GVD sing 182 n n 
N3 C2 GVD doub 183 n n 
C2 NAQ GVD sing 184 n n 
NAQ CAU GVD doub 185 n n 
CAU CAG GVD sing 186 n n 
CAG CAE GVD doub 187 n n 
CAB NAA GVD trip 188 n n 
CAU CAH GVD sing 189 n n 
CAF CAH GVD doub 190 n n 
CAB CA0 GVD sing 191 n n 
CAE CAT GVD sing 192 n n 
CAF CAT GVD sing 193 n n 
CA0 CAT GVD sing 194 n n 
CAL HAL1 GVD sing 195 n n 
CAL HAL2 GVD sing 196 n n 
CAM HAM1 GVD sing 197 n n 
CAM HAM2 GVD sing 198 n n 
CBB HBB GVD sing 199 n n 
CAK HAK GVD sing 200 n n 
NAS HAS GVD sing 201 n n 
NAR HAR GVD sing 202 n n 
CAJ HAJ GVD sing 203 n n 
CAD HAD GVD sing 204 n n 
CAC HAC GVD sing 205 n n 
CAI HAI GVD sing 206 n n 
CAG HAG GVD sing 207 n n 
CAH HAH GVD sing 208 n n 
CAE HAE GVD sing 209 n n 
CAT HAT GVD sing 210 n n 
CA0 HA01 GVD sing 211 n n 
CA0 HA02 GVD sing 212 n n 
CAF HAF GVD sing 213 n n 
#
_atom_sites.entry_id                     2VN9 
_atom_sites.fract_transf_matrix[1][1]    0.014646 
_atom_sites.fract_transf_matrix[1][2]    0.008456 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016912 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00319 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 PO4 A 1 1310 1310 PO4 PO4 . 
D 2 PO4 A 1 1311 1311 PO4 PO4 . 
E 3 CL A 1 1312 1312 CL CL . 
F 4 EPE A 1 1313 1313 EPE EPE . 
G 5 GVD A 1 1314 1314 GVD GVD . 
H 5 GVD B 1 1310 1310 GVD GVD . 
I 2 PO4 B 1 1311 1311 PO4 PO4 . 
J 2 PO4 B 1 1312 1312 PO4 PO4 . 
K 6 HOH A 1 2001 2001 HOH HOH . 
K 6 HOH A 2 2002 2002 HOH HOH . 
K 6 HOH A 3 2003 2003 HOH HOH . 
K 6 HOH A 4 2004 2004 HOH HOH . 
K 6 HOH A 5 2005 2005 HOH HOH . 
K 6 HOH A 6 2006 2006 HOH HOH . 
K 6 HOH A 7 2007 2007 HOH HOH . 
K 6 HOH A 8 2008 2008 HOH HOH . 
K 6 HOH A 9 2009 2009 HOH HOH . 
K 6 HOH A 10 2010 2010 HOH HOH . 
K 6 HOH A 11 2011 2011 HOH HOH . 
K 6 HOH A 12 2012 2012 HOH HOH . 
K 6 HOH A 13 2013 2013 HOH HOH . 
K 6 HOH A 14 2014 2014 HOH HOH . 
K 6 HOH A 15 2015 2015 HOH HOH . 
K 6 HOH A 16 2016 2016 HOH HOH . 
K 6 HOH A 17 2017 2017 HOH HOH . 
K 6 HOH A 18 2018 2018 HOH HOH . 
K 6 HOH A 19 2019 2019 HOH HOH . 
K 6 HOH A 20 2020 2020 HOH HOH . 
K 6 HOH A 21 2021 2021 HOH HOH . 
K 6 HOH A 22 2022 2022 HOH HOH . 
K 6 HOH A 23 2023 2023 HOH HOH . 
K 6 HOH A 24 2024 2024 HOH HOH . 
K 6 HOH A 25 2025 2025 HOH HOH . 
K 6 HOH A 26 2026 2026 HOH HOH . 
K 6 HOH A 27 2027 2027 HOH HOH . 
K 6 HOH A 28 2028 2028 HOH HOH . 
K 6 HOH A 29 2029 2029 HOH HOH . 
K 6 HOH A 30 2030 2030 HOH HOH . 
K 6 HOH A 31 2031 2031 HOH HOH . 
K 6 HOH A 32 2032 2032 HOH HOH . 
K 6 HOH A 33 2033 2033 HOH HOH . 
K 6 HOH A 34 2034 2034 HOH HOH . 
K 6 HOH A 35 2035 2035 HOH HOH . 
K 6 HOH A 36 2036 2036 HOH HOH . 
K 6 HOH A 37 2037 2037 HOH HOH . 
K 6 HOH A 38 2038 2038 HOH HOH . 
K 6 HOH A 39 2039 2039 HOH HOH . 
K 6 HOH A 40 2040 2040 HOH HOH . 
K 6 HOH A 41 2041 2041 HOH HOH . 
K 6 HOH A 42 2042 2042 HOH HOH . 
K 6 HOH A 43 2043 2043 HOH HOH . 
K 6 HOH A 44 2044 2044 HOH HOH . 
K 6 HOH A 45 2045 2045 HOH HOH . 
K 6 HOH A 46 2046 2046 HOH HOH . 
K 6 HOH A 47 2047 2047 HOH HOH . 
K 6 HOH A 48 2048 2048 HOH HOH . 
K 6 HOH A 49 2049 2049 HOH HOH . 
K 6 HOH A 50 2050 2050 HOH HOH . 
K 6 HOH A 51 2051 2051 HOH HOH . 
K 6 HOH A 52 2052 2052 HOH HOH . 
K 6 HOH A 53 2053 2053 HOH HOH . 
K 6 HOH A 54 2054 2054 HOH HOH . 
K 6 HOH A 55 2055 2055 HOH HOH . 
K 6 HOH A 56 2056 2056 HOH HOH . 
K 6 HOH A 57 2057 2057 HOH HOH . 
K 6 HOH A 58 2058 2058 HOH HOH . 
K 6 HOH A 59 2059 2059 HOH HOH . 
K 6 HOH A 60 2060 2060 HOH HOH . 
K 6 HOH A 61 2061 2061 HOH HOH . 
K 6 HOH A 62 2062 2062 HOH HOH . 
K 6 HOH A 63 2063 2063 HOH HOH . 
K 6 HOH A 64 2064 2064 HOH HOH . 
K 6 HOH A 65 2065 2065 HOH HOH . 
K 6 HOH A 66 2066 2066 HOH HOH . 
K 6 HOH A 67 2067 2067 HOH HOH . 
K 6 HOH A 68 2068 2068 HOH HOH . 
K 6 HOH A 69 2069 2069 HOH HOH . 
K 6 HOH A 70 2070 2070 HOH HOH . 
K 6 HOH A 71 2071 2071 HOH HOH . 
K 6 HOH A 72 2072 2072 HOH HOH . 
K 6 HOH A 73 2073 2073 HOH HOH . 
L 6 HOH B 1 2001 2001 HOH HOH . 
L 6 HOH B 2 2002 2002 HOH HOH . 
L 6 HOH B 3 2003 2003 HOH HOH . 
L 6 HOH B 4 2004 2004 HOH HOH . 
L 6 HOH B 5 2005 2005 HOH HOH . 
L 6 HOH B 6 2006 2006 HOH HOH . 
L 6 HOH B 7 2007 2007 HOH HOH . 
L 6 HOH B 8 2008 2008 HOH HOH . 
L 6 HOH B 9 2009 2009 HOH HOH . 
L 6 HOH B 10 2010 2010 HOH HOH . 
L 6 HOH B 11 2011 2011 HOH HOH . 
L 6 HOH B 12 2012 2012 HOH HOH . 
L 6 HOH B 13 2013 2013 HOH HOH . 
L 6 HOH B 14 2014 2014 HOH HOH . 
L 6 HOH B 15 2015 2015 HOH HOH . 
L 6 HOH B 16 2016 2016 HOH HOH . 
L 6 HOH B 17 2017 2017 HOH HOH . 
L 6 HOH B 18 2018 2018 HOH HOH . 
L 6 HOH B 19 2019 2019 HOH HOH . 
L 6 HOH B 20 2020 2020 HOH HOH . 
L 6 HOH B 21 2021 2021 HOH HOH . 
L 6 HOH B 22 2022 2022 HOH HOH . 
L 6 HOH B 23 2023 2023 HOH HOH . 
L 6 HOH B 24 2024 2024 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAL GVD . . . H 5 -1.259 57.39 4.04 1 56.68 ? CAL GVD 1310 B 1 
HETATM 2 C CAM GVD . . . H 5 -2.257 58.292 3.279 1 61.97 ? CAM GVD 1310 B 1 
HETATM 3 C CBB GVD . . . H 5 -1.885 56.92 2.727 1 61.15 ? CBB GVD 1310 B 1 
HETATM 4 C CAX GVD . . . H 5 -2.968 55.835 2.853 1 60.26 ? CAX GVD 1310 B 1 
HETATM 5 C CAK GVD . . . H 5 -4.062 55.838 3.633 1 56.65 ? CAK GVD 1310 B 1 
HETATM 6 N NAS GVD . . . H 5 -2.886 54.712 2.149 1 59.6 ? NAS GVD 1310 B 1 
HETATM 7 N NAN GVD . . . H 5 -3.872 54.056 2.456 1 58 ? NAN GVD 1310 B 1 
HETATM 8 C CAV GVD . . . H 5 -4.627 54.663 3.347 1 54.71 ? CAV GVD 1310 B 1 
HETATM 9 N NAR GVD . . . H 5 -5.741 54.051 3.79 1 49.93 ? NAR GVD 1310 B 1 
HETATM 10 C C6 GVD . . . H 5 -6.59 54.499 4.726 1 52.45 ? C6 GVD 1310 B 1 
HETATM 11 N N1 GVD . . . H 5 -6.326 55.603 5.429 1 65.04 ? N1 GVD 1310 B 1 
HETATM 12 C C5 GVD . . . H 5 -7.767 53.78 4.997 1 69.34 ? C5 GVD 1310 B 1 
HETATM 13 C CAJ GVD . . . H 5 -8.109 52.602 4.307 1 68.79 ? CAJ GVD 1310 B 1 
HETATM 14 C CAD GVD . . . H 5 -9.297 51.926 4.59 1 67.39 ? CAD GVD 1310 B 1 
HETATM 15 C CAC GVD . . . H 5 -10.152 52.418 5.579 1 63.92 ? CAC GVD 1310 B 1 
HETATM 16 C CAI GVD . . . H 5 -9.815 53.579 6.276 1 71.17 ? CAI GVD 1310 B 1 
HETATM 17 C C4 GVD . . . H 5 -8.626 54.258 5.986 1 74.2 ? C4 GVD 1310 B 1 
HETATM 18 N N3 GVD . . . H 5 -8.297 55.384 6.647 1 77.53 ? N3 GVD 1310 B 1 
HETATM 19 C C2 GVD . . . H 5 -7.161 56.056 6.383 1 72.81 ? C2 GVD 1310 B 1 
HETATM 20 N NAQ GVD . . . H 5 -6.921 57.175 7.083 1 75.32 ? NAQ GVD 1310 B 1 
HETATM 21 C CAU GVD . . . H 5 -5.813 57.941 7.009 1 81.48 ? CAU GVD 1310 B 1 
HETATM 22 C CAG GVD . . . H 5 -4.499 57.444 7.017 1 73.23 ? CAG GVD 1310 B 1 
HETATM 23 C CAE GVD . . . H 5 -3.398 58.309 6.943 1 73.6 ? CAE GVD 1310 B 1 
HETATM 24 C CAB GVD . . . H 5 -1.45 60.601 5.749 1 62.54 ? CAB GVD 1310 B 1 
HETATM 25 N NAA GVD . . . H 5 -0.618 60.537 4.964 1 67.03 ? NAA GVD 1310 B 1 
HETATM 26 C CAF GVD . . . H 5 -4.903 60.174 6.893 1 85.77 ? CAF GVD 1310 B 1 
HETATM 27 C CAH GVD . . . H 5 -6 59.317 6.962 1 84 ? CAH GVD 1310 B 1 
HETATM 28 C CA0 GVD . . . H 5 -2.434 60.727 6.827 1 73.46 ? CA0 GVD 1310 B 1 
HETATM 29 C CAT GVD . . . H 5 -3.594 59.69 6.873 1 79.45 ? CAT GVD 1310 B 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           300 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           29 
#