data_2VN9
#
_model_server_result.job_id            EOia5yb4oMPki-YPrQ73BA 
_model_server_result.datetime_utc      '2025-02-18 02:26:43' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2vn9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":1313}' 
#
_entry.id    2VN9 
#
_exptl.entry_id    2VN9 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              238.305 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            2VN9 
_cell.length_a            68.276 
_cell.length_b            68.276 
_cell.length_c            313.45 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2VN9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,K 1 1 
B,H,I,J,L 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             F 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C8 H18 N2 O4 S' 
_chem_comp.formula_weight    238.305 
_chem_comp.id                EPE 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEPES 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 EPE sing 83 n n 
N1 C6 EPE sing 84 n n 
N1 C9 EPE sing 85 n n 
C2 C3 EPE sing 86 n n 
C2 H21 EPE sing 87 n n 
C2 H22 EPE sing 88 n n 
C3 N4 EPE sing 89 n n 
C3 H31 EPE sing 90 n n 
C3 H32 EPE sing 91 n n 
N4 C5 EPE sing 92 n n 
N4 C7 EPE sing 93 n n 
C5 C6 EPE sing 94 n n 
C5 H51 EPE sing 95 n n 
C5 H52 EPE sing 96 n n 
C6 H61 EPE sing 97 n n 
C6 H62 EPE sing 98 n n 
C7 C8 EPE sing 99 n n 
C7 H71 EPE sing 100 n n 
C7 H72 EPE sing 101 n n 
C8 O8 EPE sing 102 n n 
C8 H81 EPE sing 103 n n 
C8 H82 EPE sing 104 n n 
O8 HO8 EPE sing 105 n n 
C9 C10 EPE sing 106 n n 
C9 H91 EPE sing 107 n n 
C9 H92 EPE sing 108 n n 
C10 S EPE sing 109 n n 
C10 H101 EPE sing 110 n n 
C10 H102 EPE sing 111 n n 
S O1S EPE doub 112 n n 
S O2S EPE doub 113 n n 
S O3S EPE sing 114 n n 
O3S HOS3 EPE sing 115 n n 
#
_atom_sites.entry_id                     2VN9 
_atom_sites.fract_transf_matrix[1][1]    0.014646 
_atom_sites.fract_transf_matrix[1][2]    0.008456 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016912 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00319 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 PO4 A 1 1310 1310 PO4 PO4 . 
D 2 PO4 A 1 1311 1311 PO4 PO4 . 
E 3 CL A 1 1312 1312 CL CL . 
F 4 EPE A 1 1313 1313 EPE EPE . 
G 5 GVD A 1 1314 1314 GVD GVD . 
H 5 GVD B 1 1310 1310 GVD GVD . 
I 2 PO4 B 1 1311 1311 PO4 PO4 . 
J 2 PO4 B 1 1312 1312 PO4 PO4 . 
K 6 HOH A 1 2001 2001 HOH HOH . 
K 6 HOH A 2 2002 2002 HOH HOH . 
K 6 HOH A 3 2003 2003 HOH HOH . 
K 6 HOH A 4 2004 2004 HOH HOH . 
K 6 HOH A 5 2005 2005 HOH HOH . 
K 6 HOH A 6 2006 2006 HOH HOH . 
K 6 HOH A 7 2007 2007 HOH HOH . 
K 6 HOH A 8 2008 2008 HOH HOH . 
K 6 HOH A 9 2009 2009 HOH HOH . 
K 6 HOH A 10 2010 2010 HOH HOH . 
K 6 HOH A 11 2011 2011 HOH HOH . 
K 6 HOH A 12 2012 2012 HOH HOH . 
K 6 HOH A 13 2013 2013 HOH HOH . 
K 6 HOH A 14 2014 2014 HOH HOH . 
K 6 HOH A 15 2015 2015 HOH HOH . 
K 6 HOH A 16 2016 2016 HOH HOH . 
K 6 HOH A 17 2017 2017 HOH HOH . 
K 6 HOH A 18 2018 2018 HOH HOH . 
K 6 HOH A 19 2019 2019 HOH HOH . 
K 6 HOH A 20 2020 2020 HOH HOH . 
K 6 HOH A 21 2021 2021 HOH HOH . 
K 6 HOH A 22 2022 2022 HOH HOH . 
K 6 HOH A 23 2023 2023 HOH HOH . 
K 6 HOH A 24 2024 2024 HOH HOH . 
K 6 HOH A 25 2025 2025 HOH HOH . 
K 6 HOH A 26 2026 2026 HOH HOH . 
K 6 HOH A 27 2027 2027 HOH HOH . 
K 6 HOH A 28 2028 2028 HOH HOH . 
K 6 HOH A 29 2029 2029 HOH HOH . 
K 6 HOH A 30 2030 2030 HOH HOH . 
K 6 HOH A 31 2031 2031 HOH HOH . 
K 6 HOH A 32 2032 2032 HOH HOH . 
K 6 HOH A 33 2033 2033 HOH HOH . 
K 6 HOH A 34 2034 2034 HOH HOH . 
K 6 HOH A 35 2035 2035 HOH HOH . 
K 6 HOH A 36 2036 2036 HOH HOH . 
K 6 HOH A 37 2037 2037 HOH HOH . 
K 6 HOH A 38 2038 2038 HOH HOH . 
K 6 HOH A 39 2039 2039 HOH HOH . 
K 6 HOH A 40 2040 2040 HOH HOH . 
K 6 HOH A 41 2041 2041 HOH HOH . 
K 6 HOH A 42 2042 2042 HOH HOH . 
K 6 HOH A 43 2043 2043 HOH HOH . 
K 6 HOH A 44 2044 2044 HOH HOH . 
K 6 HOH A 45 2045 2045 HOH HOH . 
K 6 HOH A 46 2046 2046 HOH HOH . 
K 6 HOH A 47 2047 2047 HOH HOH . 
K 6 HOH A 48 2048 2048 HOH HOH . 
K 6 HOH A 49 2049 2049 HOH HOH . 
K 6 HOH A 50 2050 2050 HOH HOH . 
K 6 HOH A 51 2051 2051 HOH HOH . 
K 6 HOH A 52 2052 2052 HOH HOH . 
K 6 HOH A 53 2053 2053 HOH HOH . 
K 6 HOH A 54 2054 2054 HOH HOH . 
K 6 HOH A 55 2055 2055 HOH HOH . 
K 6 HOH A 56 2056 2056 HOH HOH . 
K 6 HOH A 57 2057 2057 HOH HOH . 
K 6 HOH A 58 2058 2058 HOH HOH . 
K 6 HOH A 59 2059 2059 HOH HOH . 
K 6 HOH A 60 2060 2060 HOH HOH . 
K 6 HOH A 61 2061 2061 HOH HOH . 
K 6 HOH A 62 2062 2062 HOH HOH . 
K 6 HOH A 63 2063 2063 HOH HOH . 
K 6 HOH A 64 2064 2064 HOH HOH . 
K 6 HOH A 65 2065 2065 HOH HOH . 
K 6 HOH A 66 2066 2066 HOH HOH . 
K 6 HOH A 67 2067 2067 HOH HOH . 
K 6 HOH A 68 2068 2068 HOH HOH . 
K 6 HOH A 69 2069 2069 HOH HOH . 
K 6 HOH A 70 2070 2070 HOH HOH . 
K 6 HOH A 71 2071 2071 HOH HOH . 
K 6 HOH A 72 2072 2072 HOH HOH . 
K 6 HOH A 73 2073 2073 HOH HOH . 
L 6 HOH B 1 2001 2001 HOH HOH . 
L 6 HOH B 2 2002 2002 HOH HOH . 
L 6 HOH B 3 2003 2003 HOH HOH . 
L 6 HOH B 4 2004 2004 HOH HOH . 
L 6 HOH B 5 2005 2005 HOH HOH . 
L 6 HOH B 6 2006 2006 HOH HOH . 
L 6 HOH B 7 2007 2007 HOH HOH . 
L 6 HOH B 8 2008 2008 HOH HOH . 
L 6 HOH B 9 2009 2009 HOH HOH . 
L 6 HOH B 10 2010 2010 HOH HOH . 
L 6 HOH B 11 2011 2011 HOH HOH . 
L 6 HOH B 12 2012 2012 HOH HOH . 
L 6 HOH B 13 2013 2013 HOH HOH . 
L 6 HOH B 14 2014 2014 HOH HOH . 
L 6 HOH B 15 2015 2015 HOH HOH . 
L 6 HOH B 16 2016 2016 HOH HOH . 
L 6 HOH B 17 2017 2017 HOH HOH . 
L 6 HOH B 18 2018 2018 HOH HOH . 
L 6 HOH B 19 2019 2019 HOH HOH . 
L 6 HOH B 20 2020 2020 HOH HOH . 
L 6 HOH B 21 2021 2021 HOH HOH . 
L 6 HOH B 22 2022 2022 HOH HOH . 
L 6 HOH B 23 2023 2023 HOH HOH . 
L 6 HOH B 24 2024 2024 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 EPE . . . F 4 25.635 7.691 40.232 1 89.18 ? N1 EPE 1313 A 1 
HETATM 2 C C2 EPE . . . F 4 25.086 8.885 40.891 1 88.04 ? C2 EPE 1313 A 1 
HETATM 3 C C3 EPE . . . F 4 25.81 10.098 40.319 1 86.29 ? C3 EPE 1313 A 1 
HETATM 4 N N4 EPE . . . F 4 26.357 9.868 38.973 1 84.81 ? N4 EPE 1313 A 1 
HETATM 5 C C5 EPE . . . F 4 25.574 8.944 38.147 1 87.11 ? C5 EPE 1313 A 1 
HETATM 6 C C6 EPE . . . F 4 25.176 7.646 38.842 1 90.68 ? C6 EPE 1313 A 1 
HETATM 7 C C7 EPE . . . F 4 26.542 11.098 38.222 1 67.94 ? C7 EPE 1313 A 1 
HETATM 8 C C8 EPE . . . F 4 27.216 12.206 38.992 1 64.89 ? C8 EPE 1313 A 1 
HETATM 9 O O8 EPE . . . F 4 26.23 13.161 39.275 1 65.32 ? O8 EPE 1313 A 1 
HETATM 10 C C9 EPE . . . F 4 25.414 6.432 40.95 1 86.82 ? C9 EPE 1313 A 1 
HETATM 11 C C10 EPE . . . F 4 23.988 6.319 41.464 1 91.9 ? C10 EPE 1313 A 1 
HETATM 12 S S EPE . . . F 4 23.581 4.622 41.928 1 90.58 ? S EPE 1313 A 1 
HETATM 13 O O1S EPE . . . F 4 22.396 4.254 41.147 1 87.31 ? O1S EPE 1313 A 1 
HETATM 14 O O2S EPE . . . F 4 23.361 4.586 43.373 1 82.21 ? O2S EPE 1313 A 1 
HETATM 15 O O3S EPE . . . F 4 24.656 3.684 41.574 1 99.12 ? O3S EPE 1313 A 1 
#
_model_server_stats.io_time_ms              81 
_model_server_stats.parse_time_ms           123 
_model_server_stats.create_model_time_ms    20 
_model_server_stats.query_time_ms           282 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           15 
#