data_2VNH
#
_model_server_result.job_id            xsfKCQKNjH42P58cpi7YEg 
_model_server_result.datetime_utc      '2024-10-11 00:22:09' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2vnh 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":274}' 
#
_entry.id    2VNH 
#
_exptl.entry_id    2VNH 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              743.405 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            2VNH 
_cell.length_a            61.93 
_cell.length_b            61.93 
_cell.length_c            123 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2VNH 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        PQS 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C21 H28 N7 O17 P3' 
_chem_comp.formula_weight    743.405 
_chem_comp.id                NAP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAP doub 373 n n 
PA O2A NAP sing 374 n n 
PA O5B NAP sing 375 n n 
PA O3 NAP sing 376 n n 
O2A HOA2 NAP sing 377 n n 
O5B C5B NAP sing 378 n n 
C5B C4B NAP sing 379 n n 
C5B H51A NAP sing 380 n n 
C5B H52A NAP sing 381 n n 
C4B O4B NAP sing 382 n n 
C4B C3B NAP sing 383 n n 
C4B H4B NAP sing 384 n n 
O4B C1B NAP sing 385 n n 
C3B O3B NAP sing 386 n n 
C3B C2B NAP sing 387 n n 
C3B H3B NAP sing 388 n n 
O3B HO3A NAP sing 389 n n 
C2B O2B NAP sing 390 n n 
C2B C1B NAP sing 391 n n 
C2B H2B NAP sing 392 n n 
O2B P2B NAP sing 393 n n 
C1B N9A NAP sing 394 n n 
C1B H1B NAP sing 395 n n 
N9A C8A NAP sing 396 n y 
N9A C4A NAP sing 397 n y 
C8A N7A NAP doub 398 n y 
C8A H8A NAP sing 399 n n 
N7A C5A NAP sing 400 n y 
C5A C6A NAP sing 401 n y 
C5A C4A NAP doub 402 n y 
C6A N6A NAP sing 403 n n 
C6A N1A NAP doub 404 n y 
N6A H61A NAP sing 405 n n 
N6A H62A NAP sing 406 n n 
N1A C2A NAP sing 407 n y 
C2A N3A NAP doub 408 n y 
C2A H2A NAP sing 409 n n 
N3A C4A NAP sing 410 n y 
O3 PN NAP sing 411 n n 
PN O1N NAP doub 412 n n 
PN O2N NAP sing 413 n n 
PN O5D NAP sing 414 n n 
O5D C5D NAP sing 415 n n 
C5D C4D NAP sing 416 n n 
C5D H51N NAP sing 417 n n 
C5D H52N NAP sing 418 n n 
C4D O4D NAP sing 419 n n 
C4D C3D NAP sing 420 n n 
C4D H4D NAP sing 421 n n 
O4D C1D NAP sing 422 n n 
C3D O3D NAP sing 423 n n 
C3D C2D NAP sing 424 n n 
C3D H3D NAP sing 425 n n 
O3D HO3N NAP sing 426 n n 
C2D O2D NAP sing 427 n n 
C2D C1D NAP sing 428 n n 
C2D H2D NAP sing 429 n n 
O2D HO2N NAP sing 430 n n 
C1D N1N NAP sing 431 n n 
C1D H1D NAP sing 432 n n 
N1N C2N NAP sing 433 n y 
N1N C6N NAP doub 434 n y 
C2N C3N NAP doub 435 n y 
C2N H2N NAP sing 436 n n 
C3N C7N NAP sing 437 n n 
C3N C4N NAP sing 438 n y 
C7N O7N NAP doub 439 n n 
C7N N7N NAP sing 440 n n 
N7N H71N NAP sing 441 n n 
N7N H72N NAP sing 442 n n 
C4N C5N NAP doub 443 n y 
C4N H4N NAP sing 444 n n 
C5N C6N NAP sing 445 n y 
C5N H5N NAP sing 446 n n 
C6N H6N NAP sing 447 n n 
P2B O1X NAP doub 448 n n 
P2B O2X NAP sing 449 n n 
P2B O3X NAP sing 450 n n 
O2X HOP2 NAP sing 451 n n 
O3X HOP3 NAP sing 452 n n 
#
_atom_sites.entry_id                     2VNH 
_atom_sites.fract_transf_matrix[1][1]    0.016147 
_atom_sites.fract_transf_matrix[1][2]    0.009323 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018645 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00813 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 FAD A 1 273 273 FAD FAD . 
C 3 NAP A 1 274 274 NAP NAP . 
D 4 HTG A 1 275 275 HTG HTG . 
E 5 HOH A 1 2001 2001 HOH HOH . 
E 5 HOH A 2 2002 2002 HOH HOH . 
E 5 HOH A 3 2003 2003 HOH HOH . 
E 5 HOH A 4 2004 2004 HOH HOH . 
E 5 HOH A 5 2005 2005 HOH HOH . 
E 5 HOH A 6 2006 2006 HOH HOH . 
E 5 HOH A 7 2007 2007 HOH HOH . 
E 5 HOH A 8 2008 2008 HOH HOH . 
E 5 HOH A 9 2009 2009 HOH HOH . 
E 5 HOH A 10 2010 2010 HOH HOH . 
E 5 HOH A 11 2011 2011 HOH HOH . 
E 5 HOH A 12 2012 2012 HOH HOH . 
E 5 HOH A 13 2013 2013 HOH HOH . 
E 5 HOH A 14 2014 2014 HOH HOH . 
E 5 HOH A 15 2015 2015 HOH HOH . 
E 5 HOH A 16 2016 2016 HOH HOH . 
E 5 HOH A 17 2017 2017 HOH HOH . 
E 5 HOH A 18 2018 2018 HOH HOH . 
E 5 HOH A 19 2019 2019 HOH HOH . 
E 5 HOH A 20 2020 2020 HOH HOH . 
E 5 HOH A 21 2021 2021 HOH HOH . 
E 5 HOH A 22 2022 2022 HOH HOH . 
E 5 HOH A 23 2023 2023 HOH HOH . 
E 5 HOH A 24 2024 2024 HOH HOH . 
E 5 HOH A 25 2025 2025 HOH HOH . 
E 5 HOH A 26 2026 2026 HOH HOH . 
E 5 HOH A 27 2027 2027 HOH HOH . 
E 5 HOH A 28 2028 2028 HOH HOH . 
E 5 HOH A 29 2029 2029 HOH HOH . 
E 5 HOH A 30 2030 2030 HOH HOH . 
E 5 HOH A 31 2031 2031 HOH HOH . 
E 5 HOH A 32 2032 2032 HOH HOH . 
E 5 HOH A 33 2033 2033 HOH HOH . 
E 5 HOH A 34 2034 2034 HOH HOH . 
E 5 HOH A 35 2035 2035 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAP . . . C 3 -10.454 55.022 16.097 1 105.36 ? PA NAP 274 A 1 
HETATM 2 O O1A NAP . . . C 3 -10.314 55.222 14.625 1 104.29 ? O1A NAP 274 A 1 
HETATM 3 O O2A NAP . . . C 3 -9.134 55.344 16.832 1 103.51 ? O2A NAP 274 A 1 
HETATM 4 O O5B NAP . . . C 3 -10.916 53.499 16.414 1 103.71 ? O5B NAP 274 A 1 
HETATM 5 C C5B NAP . . . C 3 -10.755 52.396 15.507 1 99.72 ? C5B NAP 274 A 1 
HETATM 6 C C4B NAP . . . C 3 -10.152 51.196 16.262 1 97.84 ? C4B NAP 274 A 1 
HETATM 7 O O4B NAP . . . C 3 -8.758 51.112 15.997 1 96.89 ? O4B NAP 274 A 1 
HETATM 8 C C3B NAP . . . C 3 -10.292 51.281 17.782 1 95.7 ? C3B NAP 274 A 1 
HETATM 9 O O3B NAP . . . C 3 -10.515 49.987 18.302 1 95.61 ? O3B NAP 274 A 1 
HETATM 10 C C2B NAP . . . C 3 -8.949 51.837 18.222 1 93.45 ? C2B NAP 274 A 1 
HETATM 11 O O2B NAP . . . C 3 -8.594 51.555 19.565 1 91.69 ? O2B NAP 274 A 1 
HETATM 12 C C1B NAP . . . C 3 -8.04 51.164 17.215 1 94.62 ? C1B NAP 274 A 1 
HETATM 13 N N9A NAP . . . C 3 -6.78 51.882 17.03 1 93.19 ? N9A NAP 274 A 1 
HETATM 14 C C8A NAP . . . C 3 -6.595 53.19 16.66 1 92.55 ? C8A NAP 274 A 1 
HETATM 15 N N7A NAP . . . C 3 -5.263 53.42 16.617 1 92.25 ? N7A NAP 274 A 1 
HETATM 16 C C5A NAP . . . C 3 -4.622 52.276 16.945 1 91.18 ? C5A NAP 274 A 1 
HETATM 17 C C6A NAP . . . C 3 -3.281 51.957 17.047 1 92.23 ? C6A NAP 274 A 1 
HETATM 18 N N6A NAP . . . C 3 -2.395 52.865 16.616 1 93.55 ? N6A NAP 274 A 1 
HETATM 19 N N1A NAP . . . C 3 -2.901 50.671 17.416 1 90.59 ? N1A NAP 274 A 1 
HETATM 20 C C2A NAP . . . C 3 -3.862 49.713 17.68 1 88.69 ? C2A NAP 274 A 1 
HETATM 21 N N3A NAP . . . C 3 -5.197 50.042 17.567 1 87.93 ? N3A NAP 274 A 1 
HETATM 22 C C4A NAP . . . C 3 -5.561 51.298 17.209 1 90.85 ? C4A NAP 274 A 1 
HETATM 23 O O3 NAP . . . C 3 -11.67 55.947 16.649 1 109.48 ? O3 NAP 274 A 1 
HETATM 24 P PN NAP . . . C 3 -12.881 56.49 15.708 1 114.09 ? PN NAP 274 A 1 
HETATM 25 O O1N NAP . . . C 3 -14.156 56.396 16.484 1 112.51 ? O1N NAP 274 A 1 
HETATM 26 O O2N NAP . . . C 3 -12.809 55.777 14.404 1 115.71 ? O2N NAP 274 A 1 
HETATM 27 O O5D NAP . . . C 3 -12.497 58.061 15.457 1 116.33 ? O5D NAP 274 A 1 
HETATM 28 C C5D NAP . . . C 3 -12.698 58.739 14.22 1 118.55 ? C5D NAP 274 A 1 
HETATM 29 C C4D NAP . . . C 3 -13.487 60.029 14.475 1 119.74 ? C4D NAP 274 A 1 
HETATM 30 O O4D NAP . . . C 3 -14.267 60.012 15.666 1 119.94 ? O4D NAP 274 A 1 
HETATM 31 C C3D NAP . . . C 3 -12.62 61.282 14.589 1 119.97 ? C3D NAP 274 A 1 
HETATM 32 O O3D NAP . . . C 3 -12.314 61.789 13.301 1 120.11 ? O3D NAP 274 A 1 
HETATM 33 C C2D NAP . . . C 3 -13.47 62.242 15.428 1 119.97 ? C2D NAP 274 A 1 
HETATM 34 O O2D NAP . . . C 3 -14.112 63.241 14.655 1 119.1 ? O2D NAP 274 A 1 
HETATM 35 C C1D NAP . . . C 3 -14.495 61.348 16.127 1 119.9 ? C1D NAP 274 A 1 
HETATM 36 N N1N NAP . . . C 3 -13.87 61.137 17.459 1 119.88 ? N1N NAP 274 A 1 
HETATM 37 C C2N NAP . . . C 3 -14.092 62.032 18.5 1 117.96 ? C2N NAP 274 A 1 
HETATM 38 C C3N NAP . . . C 3 -13.488 61.827 19.753 1 116.35 ? C3N NAP 274 A 1 
HETATM 39 C C7N NAP . . . C 3 -13.75 62.793 20.897 1 114.22 ? C7N NAP 274 A 1 
HETATM 40 O O7N NAP . . . C 3 -14.592 63.912 20.706 1 111.82 ? O7N NAP 274 A 1 
HETATM 41 N N7N NAP . . . C 3 -13.177 62.57 22.088 1 113 ? N7N NAP 274 A 1 
HETATM 42 C C4N NAP . . . C 3 -12.645 60.718 19.929 1 118.2 ? C4N NAP 274 A 1 
HETATM 43 C C5N NAP . . . C 3 -12.423 59.818 18.878 1 119.23 ? C5N NAP 274 A 1 
HETATM 44 C C6N NAP . . . C 3 -13.045 60.042 17.642 1 120.13 ? C6N NAP 274 A 1 
HETATM 45 P P2B NAP . . . C 3 -8.968 52.645 20.725 1 90.22 ? P2B NAP 274 A 1 
HETATM 46 O O1X NAP . . . C 3 -10.464 52.643 20.851 1 91.51 ? O1X NAP 274 A 1 
HETATM 47 O O2X NAP . . . C 3 -8.269 52.34 22.076 1 84.24 ? O2X NAP 274 A 1 
HETATM 48 O O3X NAP . . . C 3 -8.562 54.057 20.251 1 91.49 ? O3X NAP 274 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           5 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           276 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           48 
#