data_2VNI
#
_model_server_result.job_id            BJw6h9xCu1c4ICXQYPxHeA 
_model_server_result.datetime_utc      '2024-10-11 00:27:09' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2vni 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":273}' 
#
_entry.id    2VNI 
#
_exptl.entry_id    2VNI 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              785.55 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN-ADENINE DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            2VNI 
_cell.length_a            121.116 
_cell.length_b            121.116 
_cell.length_c            50.574 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2VNI 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        PQS 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C27 H33 N9 O15 P2' 
_chem_comp.formula_weight    785.55 
_chem_comp.id                FAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN-ADENINE DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A FAD doub 127 n n 
PA O2A FAD sing 128 n n 
PA O5B FAD sing 129 n n 
PA O3P FAD sing 130 n n 
O2A HOA2 FAD sing 131 n n 
O5B C5B FAD sing 132 n n 
C5B C4B FAD sing 133 n n 
C5B H51A FAD sing 134 n n 
C5B H52A FAD sing 135 n n 
C4B O4B FAD sing 136 n n 
C4B C3B FAD sing 137 n n 
C4B H4B FAD sing 138 n n 
O4B C1B FAD sing 139 n n 
C3B O3B FAD sing 140 n n 
C3B C2B FAD sing 141 n n 
C3B H3B FAD sing 142 n n 
O3B HO3A FAD sing 143 n n 
C2B O2B FAD sing 144 n n 
C2B C1B FAD sing 145 n n 
C2B H2B FAD sing 146 n n 
O2B HO2A FAD sing 147 n n 
C1B N9A FAD sing 148 n n 
C1B H1B FAD sing 149 n n 
N9A C8A FAD sing 150 n y 
N9A C4A FAD sing 151 n y 
C8A N7A FAD doub 152 n y 
C8A H8A FAD sing 153 n n 
N7A C5A FAD sing 154 n y 
C5A C6A FAD sing 155 n y 
C5A C4A FAD doub 156 n y 
C6A N6A FAD sing 157 n n 
C6A N1A FAD doub 158 n y 
N6A H61A FAD sing 159 n n 
N6A H62A FAD sing 160 n n 
N1A C2A FAD sing 161 n y 
C2A N3A FAD doub 162 n y 
C2A H2A FAD sing 163 n n 
N3A C4A FAD sing 164 n y 
N1 C2 FAD sing 165 n n 
N1 C10 FAD doub 166 n n 
C2 O2 FAD doub 167 n n 
C2 N3 FAD sing 168 n n 
N3 C4 FAD sing 169 n n 
N3 HN3 FAD sing 170 n n 
C4 O4 FAD doub 171 n n 
C4 C4X FAD sing 172 n n 
C4X N5 FAD doub 173 n n 
C4X C10 FAD sing 174 n n 
N5 C5X FAD sing 175 n n 
C5X C6 FAD doub 176 n y 
C5X C9A FAD sing 177 n y 
C6 C7 FAD sing 178 n y 
C6 H6 FAD sing 179 n n 
C7 C7M FAD sing 180 n n 
C7 C8 FAD doub 181 n y 
C7M HM71 FAD sing 182 n n 
C7M HM72 FAD sing 183 n n 
C7M HM73 FAD sing 184 n n 
C8 C8M FAD sing 185 n n 
C8 C9 FAD sing 186 n y 
C8M HM81 FAD sing 187 n n 
C8M HM82 FAD sing 188 n n 
C8M HM83 FAD sing 189 n n 
C9 C9A FAD doub 190 n y 
C9 H9 FAD sing 191 n n 
C9A N10 FAD sing 192 n n 
N10 C10 FAD sing 193 n n 
N10 C1' FAD sing 194 n n 
C1' C2' FAD sing 195 n n 
C1' "H1'1" FAD sing 196 n n 
C1' "H1'2" FAD sing 197 n n 
C2' O2' FAD sing 198 n n 
C2' C3' FAD sing 199 n n 
C2' H2' FAD sing 200 n n 
O2' HO2' FAD sing 201 n n 
C3' O3' FAD sing 202 n n 
C3' C4' FAD sing 203 n n 
C3' H3' FAD sing 204 n n 
O3' HO3' FAD sing 205 n n 
C4' O4' FAD sing 206 n n 
C4' C5' FAD sing 207 n n 
C4' H4' FAD sing 208 n n 
O4' HO4' FAD sing 209 n n 
C5' O5' FAD sing 210 n n 
C5' "H5'1" FAD sing 211 n n 
C5' "H5'2" FAD sing 212 n n 
O5' P FAD sing 213 n n 
P O1P FAD doub 214 n n 
P O2P FAD sing 215 n n 
P O3P FAD sing 216 n n 
O2P HOP2 FAD sing 217 n n 
#
_atom_sites.entry_id                     2VNI 
_atom_sites.fract_transf_matrix[1][1]    0.008257 
_atom_sites.fract_transf_matrix[1][2]    0.004767 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009534 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.019773 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 FAD A 1 273 273 FAD FAD . 
C 3 A2P A 1 274 274 A2P A2P . 
D 4 HTG A 1 275 275 HTG HTG . 
E 5 HOH A 1 2001 2001 HOH HOH . 
E 5 HOH A 2 2002 2002 HOH HOH . 
E 5 HOH A 3 2003 2003 HOH HOH . 
E 5 HOH A 4 2004 2004 HOH HOH . 
E 5 HOH A 5 2005 2005 HOH HOH . 
E 5 HOH A 6 2006 2006 HOH HOH . 
E 5 HOH A 7 2007 2007 HOH HOH . 
E 5 HOH A 8 2008 2008 HOH HOH . 
E 5 HOH A 9 2009 2009 HOH HOH . 
E 5 HOH A 10 2010 2010 HOH HOH . 
E 5 HOH A 11 2011 2011 HOH HOH . 
E 5 HOH A 12 2012 2012 HOH HOH . 
E 5 HOH A 13 2013 2013 HOH HOH . 
E 5 HOH A 14 2014 2014 HOH HOH . 
E 5 HOH A 15 2015 2015 HOH HOH . 
E 5 HOH A 16 2016 2016 HOH HOH . 
E 5 HOH A 17 2017 2017 HOH HOH . 
E 5 HOH A 18 2018 2018 HOH HOH . 
E 5 HOH A 19 2019 2019 HOH HOH . 
E 5 HOH A 20 2020 2020 HOH HOH . 
E 5 HOH A 21 2021 2021 HOH HOH . 
E 5 HOH A 22 2022 2022 HOH HOH . 
E 5 HOH A 23 2023 2023 HOH HOH . 
E 5 HOH A 24 2024 2024 HOH HOH . 
E 5 HOH A 25 2025 2025 HOH HOH . 
E 5 HOH A 26 2026 2026 HOH HOH . 
E 5 HOH A 27 2027 2027 HOH HOH . 
E 5 HOH A 28 2028 2028 HOH HOH . 
E 5 HOH A 29 2029 2029 HOH HOH . 
E 5 HOH A 30 2030 2030 HOH HOH . 
E 5 HOH A 31 2031 2031 HOH HOH . 
E 5 HOH A 32 2032 2032 HOH HOH . 
E 5 HOH A 33 2033 2033 HOH HOH . 
E 5 HOH A 34 2034 2034 HOH HOH . 
E 5 HOH A 35 2035 2035 HOH HOH . 
E 5 HOH A 36 2036 2036 HOH HOH . 
E 5 HOH A 37 2037 2037 HOH HOH . 
E 5 HOH A 38 2038 2038 HOH HOH . 
E 5 HOH A 39 2039 2039 HOH HOH . 
E 5 HOH A 40 2040 2040 HOH HOH . 
E 5 HOH A 41 2041 2041 HOH HOH . 
E 5 HOH A 42 2042 2042 HOH HOH . 
E 5 HOH A 43 2043 2043 HOH HOH . 
E 5 HOH A 44 2044 2044 HOH HOH . 
E 5 HOH A 45 2045 2045 HOH HOH . 
E 5 HOH A 46 2046 2046 HOH HOH . 
E 5 HOH A 47 2047 2047 HOH HOH . 
E 5 HOH A 48 2048 2048 HOH HOH . 
E 5 HOH A 49 2049 2049 HOH HOH . 
E 5 HOH A 50 2050 2050 HOH HOH . 
E 5 HOH A 51 2051 2051 HOH HOH . 
E 5 HOH A 52 2052 2052 HOH HOH . 
E 5 HOH A 53 2053 2053 HOH HOH . 
E 5 HOH A 54 2054 2054 HOH HOH . 
E 5 HOH A 55 2055 2055 HOH HOH . 
E 5 HOH A 56 2056 2056 HOH HOH . 
E 5 HOH A 57 2057 2057 HOH HOH . 
E 5 HOH A 58 2058 2058 HOH HOH . 
E 5 HOH A 59 2059 2059 HOH HOH . 
E 5 HOH A 60 2060 2060 HOH HOH . 
E 5 HOH A 61 2061 2061 HOH HOH . 
E 5 HOH A 62 2062 2062 HOH HOH . 
E 5 HOH A 63 2063 2063 HOH HOH . 
E 5 HOH A 64 2064 2064 HOH HOH . 
E 5 HOH A 65 2065 2065 HOH HOH . 
E 5 HOH A 66 2066 2066 HOH HOH . 
E 5 HOH A 67 2067 2067 HOH HOH . 
E 5 HOH A 68 2068 2068 HOH HOH . 
E 5 HOH A 69 2069 2069 HOH HOH . 
E 5 HOH A 70 2070 2070 HOH HOH . 
E 5 HOH A 71 2071 2071 HOH HOH . 
E 5 HOH A 72 2072 2072 HOH HOH . 
E 5 HOH A 73 2073 2073 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA FAD . . . B 2 -23.159 63.569 1.172 1 44.12 ? PA FAD 273 A 1 
HETATM 2 O O1A FAD . . . B 2 -22.213 63.402 0.137 1 44.12 ? O1A FAD 273 A 1 
HETATM 3 O O2A FAD . . . B 2 -24.071 64.786 1.081 1 44.12 ? O2A FAD 273 A 1 
HETATM 4 O O5B FAD . . . B 2 -22.316 63.88 2.49 1 44.12 ? O5B FAD 273 A 1 
HETATM 5 C C5B FAD . . . B 2 -22.948 64.326 3.656 1 44.12 ? C5B FAD 273 A 1 
HETATM 6 C C4B FAD . . . B 2 -21.842 64.142 4.722 1 44.12 ? C4B FAD 273 A 1 
HETATM 7 O O4B FAD . . . B 2 -21.556 62.78 5.133 1 44.12 ? O4B FAD 273 A 1 
HETATM 8 C C3B FAD . . . B 2 -20.5 64.602 4.135 1 44.12 ? C3B FAD 273 A 1 
HETATM 9 O O3B FAD . . . B 2 -20.482 66.004 4.133 1 44.12 ? O3B FAD 273 A 1 
HETATM 10 C C2B FAD . . . B 2 -19.441 64.032 5.055 1 44.12 ? C2B FAD 273 A 1 
HETATM 11 O O2B FAD . . . B 2 -19.327 64.883 6.233 1 44.12 ? O2B FAD 273 A 1 
HETATM 12 C C1B FAD . . . B 2 -20.155 62.684 5.318 1 44.12 ? C1B FAD 273 A 1 
HETATM 13 N N9A FAD . . . B 2 -19.669 61.581 4.453 1 44.12 ? N9A FAD 273 A 1 
HETATM 14 C C8A FAD . . . B 2 -19.869 61.351 3.147 1 44.12 ? C8A FAD 273 A 1 
HETATM 15 N N7A FAD . . . B 2 -19.252 60.216 2.784 1 44.12 ? N7A FAD 273 A 1 
HETATM 16 C C5A FAD . . . B 2 -18.597 59.73 3.885 1 44.12 ? C5A FAD 273 A 1 
HETATM 17 C C6A FAD . . . B 2 -17.813 58.599 4.101 1 44.12 ? C6A FAD 273 A 1 
HETATM 18 N N6A FAD . . . B 2 -17.496 57.748 3.192 1 44.12 ? N6A FAD 273 A 1 
HETATM 19 N N1A FAD . . . B 2 -17.325 58.378 5.326 1 44.12 ? N1A FAD 273 A 1 
HETATM 20 C C2A FAD . . . B 2 -17.613 59.203 6.387 1 44.12 ? C2A FAD 273 A 1 
HETATM 21 N N3A FAD . . . B 2 -18.392 60.351 6.192 1 44.12 ? N3A FAD 273 A 1 
HETATM 22 C C4A FAD . . . B 2 -18.866 60.585 4.932 1 44.12 ? C4A FAD 273 A 1 
HETATM 23 N N1 FAD . . . B 2 -17.666 57.188 0.181 1 44.12 ? N1 FAD 273 A 1 
HETATM 24 C C2 FAD . . . B 2 -17.867 55.893 0.481 1 44.12 ? C2 FAD 273 A 1 
HETATM 25 O O2 FAD . . . B 2 -18.791 55.582 1.241 1 44.12 ? O2 FAD 273 A 1 
HETATM 26 N N3 FAD . . . B 2 -17.1 54.953 -0.131 1 44.12 ? N3 FAD 273 A 1 
HETATM 27 C C4 FAD . . . B 2 -16.06 55.276 -0.985 1 44.12 ? C4 FAD 273 A 1 
HETATM 28 O O4 FAD . . . B 2 -15.441 54.36 -1.588 1 44.12 ? O4 FAD 273 A 1 
HETATM 29 C C4X FAD . . . B 2 -15.884 56.628 -1.236 1 44.12 ? C4X FAD 273 A 1 
HETATM 30 N N5 FAD . . . B 2 -14.922 57.014 -2.108 1 44.12 ? N5 FAD 273 A 1 
HETATM 31 C C5X FAD . . . B 2 -14.718 58.392 -2.291 1 44.12 ? C5X FAD 273 A 1 
HETATM 32 C C6 FAD . . . B 2 -13.725 58.888 -3.198 1 44.12 ? C6 FAD 273 A 1 
HETATM 33 C C7 FAD . . . B 2 -13.45 60.233 -3.458 1 44.12 ? C7 FAD 273 A 1 
HETATM 34 C C7M FAD . . . B 2 -12.272 60.507 -4.284 1 44.12 ? C7M FAD 273 A 1 
HETATM 35 C C8 FAD . . . B 2 -14.294 61.195 -2.829 1 44.12 ? C8 FAD 273 A 1 
HETATM 36 C C8M FAD . . . B 2 -14.194 62.702 -2.915 1 44.12 ? C8M FAD 273 A 1 
HETATM 37 C C9 FAD . . . B 2 -15.305 60.74 -1.982 1 44.12 ? C9 FAD 273 A 1 
HETATM 38 C C9A FAD . . . B 2 -15.559 59.362 -1.725 1 44.12 ? C9A FAD 273 A 1 
HETATM 39 N N10 FAD . . . B 2 -16.573 58.975 -0.844 1 44.12 ? N10 FAD 273 A 1 
HETATM 40 C C10 FAD . . . B 2 -16.723 57.562 -0.647 1 44.12 ? C10 FAD 273 A 1 
HETATM 41 C C1' FAD . . . B 2 -17.691 59.884 -0.455 1 44.12 ? C1' FAD 273 A 1 
HETATM 42 C C2' FAD . . . B 2 -18.785 59.803 -1.566 1 44.12 ? C2' FAD 273 A 1 
HETATM 43 O O2' FAD . . . B 2 -18.402 60.469 -2.753 1 44.12 ? O2' FAD 273 A 1 
HETATM 44 C C3' FAD . . . B 2 -20.077 60.359 -1.108 1 44.12 ? C3' FAD 273 A 1 
HETATM 45 O O3' FAD . . . B 2 -19.927 61.48 -0.252 1 44.12 ? O3' FAD 273 A 1 
HETATM 46 C C4' FAD . . . B 2 -20.989 59.327 -0.29 1 44.12 ? C4' FAD 273 A 1 
HETATM 47 O O4' FAD . . . B 2 -21.567 58.454 -1.217 1 44.12 ? O4' FAD 273 A 1 
HETATM 48 C C5' FAD . . . B 2 -22.041 59.997 0.558 1 44.12 ? C5' FAD 273 A 1 
HETATM 49 O O5' FAD . . . B 2 -23.009 60.576 -0.277 1 44.12 ? O5' FAD 273 A 1 
HETATM 50 P P FAD . . . B 2 -24.38 61.172 0.268 1 44.12 ? P FAD 273 A 1 
HETATM 51 O O1P FAD . . . B 2 -25.048 61.845 -0.905 1 44.12 ? O1P FAD 273 A 1 
HETATM 52 O O2P FAD . . . B 2 -25.255 60.022 0.929 1 44.12 ? O2P FAD 273 A 1 
HETATM 53 O O3P FAD . . . B 2 -24.03 62.171 1.408 1 44.12 ? O3P FAD 273 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           284 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           53 
#