data_2VNI
#
_model_server_result.job_id            YX_j9oc4r9QalzFhm3ViMw 
_model_server_result.datetime_utc      '2024-10-11 00:24:02' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2vni 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":275}' 
#
_entry.id    2VNI 
#
_exptl.entry_id    2VNI 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              294.408 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'heptyl 1-thio-beta-D-glucopyranoside' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            2VNI 
_cell.length_a            121.116 
_cell.length_b            121.116 
_cell.length_c            50.574 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2VNI 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        PQS 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C13 H26 O5 S' 
_chem_comp.formula_weight    294.408 
_chem_comp.id                HTG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'heptyl 1-thio-beta-D-glucopyranoside' 
_chem_comp.type              d-saccharide 
_chem_comp.pdbx_synonyms     'HEPTYL 1-THIOHEXOPYRANOSIDE;heptyl 1-thio-beta-D-glucoside;heptyl 1-thio-D-glucoside;heptyl 1-thio-glucoside' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 S1 HTG sing 287 n n 
C1 C2 HTG sing 288 n n 
C1 O5 HTG sing 289 n n 
C1 H1 HTG sing 290 n n 
S1 C1' HTG sing 291 n n 
C2 O2 HTG sing 292 n n 
C2 C3 HTG sing 293 n n 
C2 H2 HTG sing 294 n n 
O2 HO2 HTG sing 295 n n 
C3 O3 HTG sing 296 n n 
C3 C4 HTG sing 297 n n 
C3 H3 HTG sing 298 n n 
O3 HO3 HTG sing 299 n n 
C4 O4 HTG sing 300 n n 
C4 C5 HTG sing 301 n n 
C4 H4 HTG sing 302 n n 
O4 HO4 HTG sing 303 n n 
C5 O5 HTG sing 304 n n 
C5 C6 HTG sing 305 n n 
C5 H5 HTG sing 306 n n 
C6 O6 HTG sing 307 n n 
C6 H61 HTG sing 308 n n 
C6 H62 HTG sing 309 n n 
O6 HO6 HTG sing 310 n n 
C1' C2' HTG sing 311 n n 
C1' "H1'1" HTG sing 312 n n 
C1' "H1'2" HTG sing 313 n n 
C2' C3' HTG sing 314 n n 
C2' "H2'1" HTG sing 315 n n 
C2' "H2'2" HTG sing 316 n n 
C3' C4' HTG sing 317 n n 
C3' "H3'1" HTG sing 318 n n 
C3' "H3'2" HTG sing 319 n n 
C4' C5' HTG sing 320 n n 
C4' "H4'1" HTG sing 321 n n 
C4' "H4'2" HTG sing 322 n n 
C5' C6' HTG sing 323 n n 
C5' "H5'1" HTG sing 324 n n 
C5' "H5'2" HTG sing 325 n n 
C6' C7' HTG sing 326 n n 
C6' "H6'1" HTG sing 327 n n 
C6' "H6'2" HTG sing 328 n n 
C7' "H7'1" HTG sing 329 n n 
C7' "H7'2" HTG sing 330 n n 
C7' "H7'3" HTG sing 331 n n 
#
_atom_sites.entry_id                     2VNI 
_atom_sites.fract_transf_matrix[1][1]    0.008257 
_atom_sites.fract_transf_matrix[1][2]    0.004767 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009534 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.019773 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 FAD A 1 273 273 FAD FAD . 
C 3 A2P A 1 274 274 A2P A2P . 
D 4 HTG A 1 275 275 HTG HTG . 
E 5 HOH A 1 2001 2001 HOH HOH . 
E 5 HOH A 2 2002 2002 HOH HOH . 
E 5 HOH A 3 2003 2003 HOH HOH . 
E 5 HOH A 4 2004 2004 HOH HOH . 
E 5 HOH A 5 2005 2005 HOH HOH . 
E 5 HOH A 6 2006 2006 HOH HOH . 
E 5 HOH A 7 2007 2007 HOH HOH . 
E 5 HOH A 8 2008 2008 HOH HOH . 
E 5 HOH A 9 2009 2009 HOH HOH . 
E 5 HOH A 10 2010 2010 HOH HOH . 
E 5 HOH A 11 2011 2011 HOH HOH . 
E 5 HOH A 12 2012 2012 HOH HOH . 
E 5 HOH A 13 2013 2013 HOH HOH . 
E 5 HOH A 14 2014 2014 HOH HOH . 
E 5 HOH A 15 2015 2015 HOH HOH . 
E 5 HOH A 16 2016 2016 HOH HOH . 
E 5 HOH A 17 2017 2017 HOH HOH . 
E 5 HOH A 18 2018 2018 HOH HOH . 
E 5 HOH A 19 2019 2019 HOH HOH . 
E 5 HOH A 20 2020 2020 HOH HOH . 
E 5 HOH A 21 2021 2021 HOH HOH . 
E 5 HOH A 22 2022 2022 HOH HOH . 
E 5 HOH A 23 2023 2023 HOH HOH . 
E 5 HOH A 24 2024 2024 HOH HOH . 
E 5 HOH A 25 2025 2025 HOH HOH . 
E 5 HOH A 26 2026 2026 HOH HOH . 
E 5 HOH A 27 2027 2027 HOH HOH . 
E 5 HOH A 28 2028 2028 HOH HOH . 
E 5 HOH A 29 2029 2029 HOH HOH . 
E 5 HOH A 30 2030 2030 HOH HOH . 
E 5 HOH A 31 2031 2031 HOH HOH . 
E 5 HOH A 32 2032 2032 HOH HOH . 
E 5 HOH A 33 2033 2033 HOH HOH . 
E 5 HOH A 34 2034 2034 HOH HOH . 
E 5 HOH A 35 2035 2035 HOH HOH . 
E 5 HOH A 36 2036 2036 HOH HOH . 
E 5 HOH A 37 2037 2037 HOH HOH . 
E 5 HOH A 38 2038 2038 HOH HOH . 
E 5 HOH A 39 2039 2039 HOH HOH . 
E 5 HOH A 40 2040 2040 HOH HOH . 
E 5 HOH A 41 2041 2041 HOH HOH . 
E 5 HOH A 42 2042 2042 HOH HOH . 
E 5 HOH A 43 2043 2043 HOH HOH . 
E 5 HOH A 44 2044 2044 HOH HOH . 
E 5 HOH A 45 2045 2045 HOH HOH . 
E 5 HOH A 46 2046 2046 HOH HOH . 
E 5 HOH A 47 2047 2047 HOH HOH . 
E 5 HOH A 48 2048 2048 HOH HOH . 
E 5 HOH A 49 2049 2049 HOH HOH . 
E 5 HOH A 50 2050 2050 HOH HOH . 
E 5 HOH A 51 2051 2051 HOH HOH . 
E 5 HOH A 52 2052 2052 HOH HOH . 
E 5 HOH A 53 2053 2053 HOH HOH . 
E 5 HOH A 54 2054 2054 HOH HOH . 
E 5 HOH A 55 2055 2055 HOH HOH . 
E 5 HOH A 56 2056 2056 HOH HOH . 
E 5 HOH A 57 2057 2057 HOH HOH . 
E 5 HOH A 58 2058 2058 HOH HOH . 
E 5 HOH A 59 2059 2059 HOH HOH . 
E 5 HOH A 60 2060 2060 HOH HOH . 
E 5 HOH A 61 2061 2061 HOH HOH . 
E 5 HOH A 62 2062 2062 HOH HOH . 
E 5 HOH A 63 2063 2063 HOH HOH . 
E 5 HOH A 64 2064 2064 HOH HOH . 
E 5 HOH A 65 2065 2065 HOH HOH . 
E 5 HOH A 66 2066 2066 HOH HOH . 
E 5 HOH A 67 2067 2067 HOH HOH . 
E 5 HOH A 68 2068 2068 HOH HOH . 
E 5 HOH A 69 2069 2069 HOH HOH . 
E 5 HOH A 70 2070 2070 HOH HOH . 
E 5 HOH A 71 2071 2071 HOH HOH . 
E 5 HOH A 72 2072 2072 HOH HOH . 
E 5 HOH A 73 2073 2073 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 HTG . . . D 4 -32.427 53.152 -9.204 1 65.51 ? C1 HTG 275 A 1 
HETATM 2 S S1 HTG . . . D 4 -31.7 53.753 -10.792 1 67.38 ? S1 HTG 275 A 1 
HETATM 3 C C2 HTG . . . D 4 -33.423 54.175 -8.559 1 66.9 ? C2 HTG 275 A 1 
HETATM 4 O O2 HTG . . . D 4 -32.736 55.386 -8.308 1 67.34 ? O2 HTG 275 A 1 
HETATM 5 C C3 HTG . . . D 4 -33.97 53.54 -7.261 1 66.68 ? C3 HTG 275 A 1 
HETATM 6 O O3 HTG . . . D 4 -34.887 54.405 -6.612 1 67.84 ? O3 HTG 275 A 1 
HETATM 7 C C4 HTG . . . D 4 -34.716 52.206 -7.616 1 65.9 ? C4 HTG 275 A 1 
HETATM 8 O O4 HTG . . . D 4 -35.2 51.628 -6.406 1 65.41 ? O4 HTG 275 A 1 
HETATM 9 C C5 HTG . . . D 4 -33.706 51.224 -8.339 1 65.9 ? C5 HTG 275 A 1 
HETATM 10 O O5 HTG . . . D 4 -33.078 51.893 -9.464 1 66.08 ? O5 HTG 275 A 1 
HETATM 11 C C6 HTG . . . D 4 -34.355 49.927 -8.927 1 65.06 ? C6 HTG 275 A 1 
HETATM 12 O O6 HTG . . . D 4 -33.553 49.349 -10.002 1 61.31 ? O6 HTG 275 A 1 
HETATM 13 C C1' HTG . . . D 4 -30.593 52.517 -11.476 1 62.86 ? C1' HTG 275 A 1 
HETATM 14 C C2' HTG . . . D 4 -29.968 52.909 -12.816 1 58.63 ? C2' HTG 275 A 1 
HETATM 15 C C3' HTG . . . D 4 -30.671 52.27 -14.008 1 57.95 ? C3' HTG 275 A 1 
HETATM 16 C C4' HTG . . . D 4 -32.045 52.827 -14.457 1 56.1 ? C4' HTG 275 A 1 
HETATM 17 C C5' HTG . . . D 4 -32.627 52.232 -15.76 1 55.39 ? C5' HTG 275 A 1 
HETATM 18 C C6' HTG . . . D 4 -33.801 53.047 -16.355 1 54.91 ? C6' HTG 275 A 1 
HETATM 19 C C7' HTG . . . D 4 -34.38 52.452 -17.655 1 54.65 ? C7' HTG 275 A 1 
#
_model_server_stats.io_time_ms              0 
_model_server_stats.parse_time_ms           5 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           279 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           19 
#