data_2VNJ # _model_server_result.job_id cdzqrlq7dYF-rPDDi4VX2w _model_server_result.datetime_utc '2024-11-29 16:23:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2vnj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":273}' # _entry.id 2VNJ # _exptl.entry_id 2VNJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2VNJ _cell.length_a 68.72 _cell.length_b 68.72 _cell.length_c 128.15 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2VNJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 83 n n PA O2A FAD sing 84 n n PA O5B FAD sing 85 n n PA O3P FAD sing 86 n n O2A HOA2 FAD sing 87 n n O5B C5B FAD sing 88 n n C5B C4B FAD sing 89 n n C5B H51A FAD sing 90 n n C5B H52A FAD sing 91 n n C4B O4B FAD sing 92 n n C4B C3B FAD sing 93 n n C4B H4B FAD sing 94 n n O4B C1B FAD sing 95 n n C3B O3B FAD sing 96 n n C3B C2B FAD sing 97 n n C3B H3B FAD sing 98 n n O3B HO3A FAD sing 99 n n C2B O2B FAD sing 100 n n C2B C1B FAD sing 101 n n C2B H2B FAD sing 102 n n O2B HO2A FAD sing 103 n n C1B N9A FAD sing 104 n n C1B H1B FAD sing 105 n n N9A C8A FAD sing 106 n y N9A C4A FAD sing 107 n y C8A N7A FAD doub 108 n y C8A H8A FAD sing 109 n n N7A C5A FAD sing 110 n y C5A C6A FAD sing 111 n y C5A C4A FAD doub 112 n y C6A N6A FAD sing 113 n n C6A N1A FAD doub 114 n y N6A H61A FAD sing 115 n n N6A H62A FAD sing 116 n n N1A C2A FAD sing 117 n y C2A N3A FAD doub 118 n y C2A H2A FAD sing 119 n n N3A C4A FAD sing 120 n y N1 C2 FAD sing 121 n n N1 C10 FAD doub 122 n n C2 O2 FAD doub 123 n n C2 N3 FAD sing 124 n n N3 C4 FAD sing 125 n n N3 HN3 FAD sing 126 n n C4 O4 FAD doub 127 n n C4 C4X FAD sing 128 n n C4X N5 FAD doub 129 n n C4X C10 FAD sing 130 n n N5 C5X FAD sing 131 n n C5X C6 FAD doub 132 n y C5X C9A FAD sing 133 n y C6 C7 FAD sing 134 n y C6 H6 FAD sing 135 n n C7 C7M FAD sing 136 n n C7 C8 FAD doub 137 n y C7M HM71 FAD sing 138 n n C7M HM72 FAD sing 139 n n C7M HM73 FAD sing 140 n n C8 C8M FAD sing 141 n n C8 C9 FAD sing 142 n y C8M HM81 FAD sing 143 n n C8M HM82 FAD sing 144 n n C8M HM83 FAD sing 145 n n C9 C9A FAD doub 146 n y C9 H9 FAD sing 147 n n C9A N10 FAD sing 148 n n N10 C10 FAD sing 149 n n N10 C1' FAD sing 150 n n C1' C2' FAD sing 151 n n C1' "H1'1" FAD sing 152 n n C1' "H1'2" FAD sing 153 n n C2' O2' FAD sing 154 n n C2' C3' FAD sing 155 n n C2' H2' FAD sing 156 n n O2' HO2' FAD sing 157 n n C3' O3' FAD sing 158 n n C3' C4' FAD sing 159 n n C3' H3' FAD sing 160 n n O3' HO3' FAD sing 161 n n C4' O4' FAD sing 162 n n C4' C5' FAD sing 163 n n C4' H4' FAD sing 164 n n O4' HO4' FAD sing 165 n n C5' O5' FAD sing 166 n n C5' "H5'1" FAD sing 167 n n C5' "H5'2" FAD sing 168 n n O5' P FAD sing 169 n n P O1P FAD doub 170 n n P O2P FAD sing 171 n n P O3P FAD sing 172 n n O2P HOP2 FAD sing 173 n n # _atom_sites.entry_id 2VNJ _atom_sites.fract_transf_matrix[1][1] 0.014552 _atom_sites.fract_transf_matrix[1][2] 0.008401 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016803 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007803 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FAD A 1 273 273 FAD FAD . C 3 NAP A 1 274 274 NAP NAP . D 4 HTG A 1 275 275 HTG HTG . E 5 HOH A 1 2001 2001 HOH HOH . E 5 HOH A 2 2002 2002 HOH HOH . E 5 HOH A 3 2003 2003 HOH HOH . E 5 HOH A 4 2004 2004 HOH HOH . E 5 HOH A 5 2005 2005 HOH HOH . E 5 HOH A 6 2006 2006 HOH HOH . E 5 HOH A 7 2007 2007 HOH HOH . E 5 HOH A 8 2008 2008 HOH HOH . E 5 HOH A 9 2009 2009 HOH HOH . E 5 HOH A 10 2010 2010 HOH HOH . E 5 HOH A 11 2011 2011 HOH HOH . E 5 HOH A 12 2012 2012 HOH HOH . E 5 HOH A 13 2013 2013 HOH HOH . E 5 HOH A 14 2014 2014 HOH HOH . E 5 HOH A 15 2015 2015 HOH HOH . E 5 HOH A 16 2016 2016 HOH HOH . E 5 HOH A 17 2017 2017 HOH HOH . E 5 HOH A 18 2018 2018 HOH HOH . E 5 HOH A 19 2019 2019 HOH HOH . E 5 HOH A 20 2020 2020 HOH HOH . E 5 HOH A 21 2021 2021 HOH HOH . E 5 HOH A 22 2022 2022 HOH HOH . E 5 HOH A 23 2023 2023 HOH HOH . E 5 HOH A 24 2024 2024 HOH HOH . E 5 HOH A 25 2025 2025 HOH HOH . E 5 HOH A 26 2026 2026 HOH HOH . E 5 HOH A 27 2027 2027 HOH HOH . E 5 HOH A 28 2028 2028 HOH HOH . E 5 HOH A 29 2029 2029 HOH HOH . E 5 HOH A 30 2030 2030 HOH HOH . E 5 HOH A 31 2031 2031 HOH HOH . E 5 HOH A 32 2032 2032 HOH HOH . E 5 HOH A 33 2033 2033 HOH HOH . E 5 HOH A 34 2034 2034 HOH HOH . E 5 HOH A 35 2035 2035 HOH HOH . E 5 HOH A 36 2036 2036 HOH HOH . E 5 HOH A 37 2037 2037 HOH HOH . E 5 HOH A 38 2038 2038 HOH HOH . E 5 HOH A 39 2039 2039 HOH HOH . E 5 HOH A 40 2040 2040 HOH HOH . E 5 HOH A 41 2041 2041 HOH HOH . E 5 HOH A 42 2042 2042 HOH HOH . E 5 HOH A 43 2043 2043 HOH HOH . E 5 HOH A 44 2044 2044 HOH HOH . E 5 HOH A 45 2045 2045 HOH HOH . E 5 HOH A 46 2046 2046 HOH HOH . E 5 HOH A 47 2047 2047 HOH HOH . E 5 HOH A 48 2048 2048 HOH HOH . E 5 HOH A 49 2049 2049 HOH HOH . E 5 HOH A 50 2050 2050 HOH HOH . E 5 HOH A 51 2051 2051 HOH HOH . E 5 HOH A 52 2052 2052 HOH HOH . E 5 HOH A 53 2053 2053 HOH HOH . E 5 HOH A 54 2054 2054 HOH HOH . E 5 HOH A 55 2055 2055 HOH HOH . E 5 HOH A 56 2056 2056 HOH HOH . E 5 HOH A 57 2057 2057 HOH HOH . E 5 HOH A 58 2058 2058 HOH HOH . E 5 HOH A 59 2059 2059 HOH HOH . E 5 HOH A 60 2060 2060 HOH HOH . E 5 HOH A 61 2061 2061 HOH HOH . E 5 HOH A 62 2062 2062 HOH HOH . E 5 HOH A 63 2063 2063 HOH HOH . E 5 HOH A 64 2064 2064 HOH HOH . E 5 HOH A 65 2065 2065 HOH HOH . E 5 HOH A 66 2066 2066 HOH HOH . E 5 HOH A 67 2067 2067 HOH HOH . E 5 HOH A 68 2068 2068 HOH HOH . E 5 HOH A 69 2069 2069 HOH HOH . E 5 HOH A 70 2070 2070 HOH HOH . E 5 HOH A 71 2071 2071 HOH HOH . E 5 HOH A 72 2072 2072 HOH HOH . E 5 HOH A 73 2073 2073 HOH HOH . E 5 HOH A 74 2074 2074 HOH HOH . E 5 HOH A 75 2075 2075 HOH HOH . E 5 HOH A 76 2076 2076 HOH HOH . E 5 HOH A 77 2077 2077 HOH HOH . E 5 HOH A 78 2078 2078 HOH HOH . E 5 HOH A 79 2079 2079 HOH HOH . E 5 HOH A 80 2080 2080 HOH HOH . E 5 HOH A 81 2081 2081 HOH HOH . E 5 HOH A 82 2082 2082 HOH HOH . E 5 HOH A 83 2083 2083 HOH HOH . E 5 HOH A 84 2084 2084 HOH HOH . E 5 HOH A 85 2085 2085 HOH HOH . E 5 HOH A 86 2086 2086 HOH HOH . E 5 HOH A 87 2087 2087 HOH HOH . E 5 HOH A 88 2088 2088 HOH HOH . E 5 HOH A 89 2089 2089 HOH HOH . E 5 HOH A 90 2090 2090 HOH HOH . E 5 HOH A 91 2091 2091 HOH HOH . E 5 HOH A 92 2092 2092 HOH HOH . E 5 HOH A 93 2093 2093 HOH HOH . E 5 HOH A 94 2094 2094 HOH HOH . E 5 HOH A 95 2095 2095 HOH HOH . E 5 HOH A 96 2096 2096 HOH HOH . E 5 HOH A 97 2097 2097 HOH HOH . E 5 HOH A 98 2098 2098 HOH HOH . E 5 HOH A 99 2099 2099 HOH HOH . E 5 HOH A 100 2100 2100 HOH HOH . E 5 HOH A 101 2101 2101 HOH HOH . E 5 HOH A 102 2102 2102 HOH HOH . E 5 HOH A 103 2103 2103 HOH HOH . E 5 HOH A 104 2104 2104 HOH HOH . E 5 HOH A 105 2105 2105 HOH HOH . E 5 HOH A 106 2106 2106 HOH HOH . E 5 HOH A 107 2107 2107 HOH HOH . E 5 HOH A 108 2108 2108 HOH HOH . E 5 HOH A 109 2109 2109 HOH HOH . E 5 HOH A 110 2110 2110 HOH HOH . E 5 HOH A 111 2111 2111 HOH HOH . E 5 HOH A 112 2112 2112 HOH HOH . E 5 HOH A 113 2113 2113 HOH HOH . E 5 HOH A 114 2114 2114 HOH HOH . E 5 HOH A 115 2115 2115 HOH HOH . E 5 HOH A 116 2116 2116 HOH HOH . E 5 HOH A 117 2117 2117 HOH HOH . E 5 HOH A 118 2118 2118 HOH HOH . E 5 HOH A 119 2119 2119 HOH HOH . E 5 HOH A 120 2120 2120 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . B 2 30.824 8.435 5.603 1 47.08 ? PA FAD 273 A 1 HETATM 2 O O1A FAD . . . B 2 30.432 7.872 6.838 1 38.74 ? O1A FAD 273 A 1 HETATM 3 O O2A FAD . . . B 2 32.158 7.975 5.03 1 44.32 ? O2A FAD 273 A 1 HETATM 4 O O5B FAD . . . B 2 31.099 9.979 5.894 1 42.7 ? O5B FAD 273 A 1 HETATM 5 C C5B FAD . . . B 2 31.726 10.787 4.939 1 45.24 ? C5B FAD 273 A 1 HETATM 6 C C4B FAD . . . B 2 31.453 12.21 5.48 1 51.29 ? C4B FAD 273 A 1 HETATM 7 O O4B FAD . . . B 2 30.099 12.711 5.337 1 45.3 ? O4B FAD 273 A 1 HETATM 8 C C3B FAD . . . B 2 31.651 12.213 7.003 1 52.76 ? C3B FAD 273 A 1 HETATM 9 O O3B FAD . . . B 2 33.028 12.209 7.264 1 61.22 ? O3B FAD 273 A 1 HETATM 10 C C2B FAD . . . B 2 30.994 13.486 7.492 1 51.1 ? C2B FAD 273 A 1 HETATM 11 O O2B FAD . . . B 2 31.904 14.604 7.276 1 52.79 ? O2B FAD 273 A 1 HETATM 12 C C1B FAD . . . B 2 29.798 13.447 6.51 1 45.15 ? C1B FAD 273 A 1 HETATM 13 N N9A FAD . . . B 2 28.57 12.86 7.099 1 44.31 ? N9A FAD 273 A 1 HETATM 14 C C8A FAD . . . B 2 28.275 11.586 7.397 1 41.66 ? C8A FAD 273 A 1 HETATM 15 N N7A FAD . . . B 2 27.033 11.511 7.899 1 42.11 ? N7A FAD 273 A 1 HETATM 16 C C5A FAD . . . B 2 26.536 12.786 7.968 1 41.43 ? C5A FAD 273 A 1 HETATM 17 C C6A FAD . . . B 2 25.316 13.308 8.391 1 33.99 ? C6A FAD 273 A 1 HETATM 18 N N6A FAD . . . B 2 24.464 12.639 9.082 1 33.21 ? N6A FAD 273 A 1 HETATM 19 N N1A FAD . . . B 2 25.116 14.627 8.306 1 38.76 ? N1A FAD 273 A 1 HETATM 20 C C2A FAD . . . B 2 26.054 15.475 7.769 1 44.85 ? C2A FAD 273 A 1 HETATM 21 N N3A FAD . . . B 2 27.292 14.975 7.345 1 45.87 ? N3A FAD 273 A 1 HETATM 22 C C4A FAD . . . B 2 27.5 13.629 7.459 1 43.23 ? C4A FAD 273 A 1 HETATM 23 N N1 FAD . . . B 2 23.527 9.923 9.789 1 33.57 ? N1 FAD 273 A 1 HETATM 24 C C2 FAD . . . B 2 22.305 10.133 9.269 1 37.17 ? C2 FAD 273 A 1 HETATM 25 O O2 FAD . . . B 2 22.197 10.446 8.078 1 39.74 ? O2 FAD 273 A 1 HETATM 26 N N3 FAD . . . B 2 21.214 9.91 10.047 1 34.44 ? N3 FAD 273 A 1 HETATM 27 C C4 FAD . . . B 2 21.309 9.559 11.383 1 38.77 ? C4 FAD 273 A 1 HETATM 28 O O4 FAD . . . B 2 20.265 9.282 12.031 1 36.96 ? O4 FAD 273 A 1 HETATM 29 C C4X FAD . . . B 2 22.594 9.383 11.871 1 33.37 ? C4X FAD 273 A 1 HETATM 30 N N5 FAD . . . B 2 22.76 8.983 13.155 1 33.64 ? N5 FAD 273 A 1 HETATM 31 C C5X FAD . . . B 2 24.074 8.879 13.644 1 38.65 ? C5X FAD 273 A 1 HETATM 32 C C6 FAD . . . B 2 24.341 8.459 14.988 1 38.06 ? C6 FAD 273 A 1 HETATM 33 C C7 FAD . . . B 2 25.604 8.316 15.567 1 36.86 ? C7 FAD 273 A 1 HETATM 34 C C7M FAD . . . B 2 25.632 8.049 17.007 1 37.71 ? C7M FAD 273 A 1 HETATM 35 C C8 FAD . . . B 2 26.729 8.524 14.715 1 37.84 ? C8 FAD 273 A 1 HETATM 36 C C8M FAD . . . B 2 28.193 8.463 15.093 1 36.64 ? C8M FAD 273 A 1 HETATM 37 C C9 FAD . . . B 2 26.5 8.881 13.386 1 36.11 ? C9 FAD 273 A 1 HETATM 38 C C9A FAD . . . B 2 25.2 9.031 12.822 1 34.42 ? C9A FAD 273 A 1 HETATM 39 N N10 FAD . . . B 2 25.042 9.417 11.488 1 37.31 ? N10 FAD 273 A 1 HETATM 40 C C10 FAD . . . B 2 23.688 9.556 11.036 1 33.84 ? C10 FAD 273 A 1 HETATM 41 C C1' FAD . . . B 2 26.134 9.293 10.479 1 33.9 ? C1' FAD 273 A 1 HETATM 42 C C2' FAD . . . B 2 26.094 7.842 9.904 1 36.79 ? C2' FAD 273 A 1 HETATM 43 O O2' FAD . . . B 2 26.528 6.876 10.841 1 41.08 ? O2' FAD 273 A 1 HETATM 44 C C3' FAD . . . B 2 26.914 7.713 8.679 1 37.39 ? C3' FAD 273 A 1 HETATM 45 O O3' FAD . . . B 2 28.089 8.507 8.71 1 33.03 ? O3' FAD 273 A 1 HETATM 46 C C4' FAD . . . B 2 26.16 8.134 7.331 1 36.61 ? C4' FAD 273 A 1 HETATM 47 O O4' FAD . . . B 2 25.273 7.102 7.007 1 37.28 ? O4' FAD 273 A 1 HETATM 48 C C5' FAD . . . B 2 27.095 8.428 6.185 1 35.22 ? C5' FAD 273 A 1 HETATM 49 O O5' FAD . . . B 2 27.694 7.232 5.758 1 42.14 ? O5' FAD 273 A 1 HETATM 50 P P FAD . . . B 2 28.586 7.13 4.445 1 42.08 ? P FAD 273 A 1 HETATM 51 O O1P FAD . . . B 2 29.262 5.783 4.493 1 40.33 ? O1P FAD 273 A 1 HETATM 52 O O2P FAD . . . B 2 27.688 7.349 3.153 1 40.15 ? O2P FAD 273 A 1 HETATM 53 O O3P FAD . . . B 2 29.602 8.307 4.481 1 36.68 ? O3P FAD 273 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 53 #