data_2VOJ # _model_server_result.job_id CE4JERrbjiIpvGaXEG9WyA _model_server_result.datetime_utc '2024-11-16 07:28:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2voj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":500}' # _entry.id 2VOJ # _exptl.entry_id 2VOJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2VOJ _cell.length_a 88.993 _cell.length_b 88.993 _cell.length_c 373.855 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2VOJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_645 y+1,x-1,-z 0 1 0 1 0 0 0 0 -1 88.993 -88.993 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 F N N ? 2 H N N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 248 n n PA O2A NAD sing 249 n n PA O5B NAD sing 250 n n PA O3 NAD sing 251 n n O2A HOA2 NAD sing 252 n n O5B C5B NAD sing 253 n n C5B C4B NAD sing 254 n n C5B H51A NAD sing 255 n n C5B H52A NAD sing 256 n n C4B O4B NAD sing 257 n n C4B C3B NAD sing 258 n n C4B H4B NAD sing 259 n n O4B C1B NAD sing 260 n n C3B O3B NAD sing 261 n n C3B C2B NAD sing 262 n n C3B H3B NAD sing 263 n n O3B HO3A NAD sing 264 n n C2B O2B NAD sing 265 n n C2B C1B NAD sing 266 n n C2B H2B NAD sing 267 n n O2B HO2A NAD sing 268 n n C1B N9A NAD sing 269 n n C1B H1B NAD sing 270 n n N9A C8A NAD sing 271 n y N9A C4A NAD sing 272 n y C8A N7A NAD doub 273 n y C8A H8A NAD sing 274 n n N7A C5A NAD sing 275 n y C5A C6A NAD sing 276 n y C5A C4A NAD doub 277 n y C6A N6A NAD sing 278 n n C6A N1A NAD doub 279 n y N6A H61A NAD sing 280 n n N6A H62A NAD sing 281 n n N1A C2A NAD sing 282 n y C2A N3A NAD doub 283 n y C2A H2A NAD sing 284 n n N3A C4A NAD sing 285 n y O3 PN NAD sing 286 n n PN O1N NAD doub 287 n n PN O2N NAD sing 288 n n PN O5D NAD sing 289 n n O5D C5D NAD sing 290 n n C5D C4D NAD sing 291 n n C5D H51N NAD sing 292 n n C5D H52N NAD sing 293 n n C4D O4D NAD sing 294 n n C4D C3D NAD sing 295 n n C4D H4D NAD sing 296 n n O4D C1D NAD sing 297 n n C3D O3D NAD sing 298 n n C3D C2D NAD sing 299 n n C3D H3D NAD sing 300 n n O3D HO3N NAD sing 301 n n C2D O2D NAD sing 302 n n C2D C1D NAD sing 303 n n C2D H2D NAD sing 304 n n O2D HO2N NAD sing 305 n n C1D N1N NAD sing 306 n n C1D H1D NAD sing 307 n n N1N C2N NAD sing 308 n y N1N C6N NAD doub 309 n y C2N C3N NAD doub 310 n y C2N H2N NAD sing 311 n n C3N C7N NAD sing 312 n n C3N C4N NAD sing 313 n y C7N O7N NAD doub 314 n n C7N N7N NAD sing 315 n n N7N H71N NAD sing 316 n n N7N H72N NAD sing 317 n n C4N C5N NAD doub 318 n y C4N H4N NAD sing 319 n n C5N C6N NAD sing 320 n y C5N H5N NAD sing 321 n n C6N H6N NAD sing 322 n n # _atom_sites.entry_id 2VOJ _atom_sites.fract_transf_matrix[1][1] 0.011237 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011237 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002675 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 NAD A 1 500 500 NAD NAD . E 3 2OP A 1 501 501 2OP 2OP . F 2 NAD C 1 500 500 NAD NAD . G 3 2OP C 1 501 501 2OP 2OP . H 2 NAD E 1 500 500 NAD NAD . I 3 2OP E 1 501 501 2OP 2OP . J 4 HOH A 1 2001 2001 HOH HOH . J 4 HOH A 2 2002 2002 HOH HOH . J 4 HOH A 3 2003 2003 HOH HOH . J 4 HOH A 4 2004 2004 HOH HOH . J 4 HOH A 5 2005 2005 HOH HOH . J 4 HOH A 6 2006 2006 HOH HOH . J 4 HOH A 7 2007 2007 HOH HOH . J 4 HOH A 8 2008 2008 HOH HOH . J 4 HOH A 9 2009 2009 HOH HOH . J 4 HOH A 10 2010 2010 HOH HOH . J 4 HOH A 11 2011 2011 HOH HOH . J 4 HOH A 12 2012 2012 HOH HOH . J 4 HOH A 13 2013 2013 HOH HOH . J 4 HOH A 14 2014 2014 HOH HOH . J 4 HOH A 15 2015 2015 HOH HOH . J 4 HOH A 16 2016 2016 HOH HOH . J 4 HOH A 17 2017 2017 HOH HOH . J 4 HOH A 18 2018 2018 HOH HOH . J 4 HOH A 19 2019 2019 HOH HOH . J 4 HOH A 20 2020 2020 HOH HOH . J 4 HOH A 21 2021 2021 HOH HOH . J 4 HOH A 22 2022 2022 HOH HOH . J 4 HOH A 23 2023 2023 HOH HOH . J 4 HOH A 24 2024 2024 HOH HOH . J 4 HOH A 25 2025 2025 HOH HOH . J 4 HOH A 26 2026 2026 HOH HOH . J 4 HOH A 27 2027 2027 HOH HOH . J 4 HOH A 28 2028 2028 HOH HOH . J 4 HOH A 29 2029 2029 HOH HOH . J 4 HOH A 30 2030 2030 HOH HOH . J 4 HOH A 31 2031 2031 HOH HOH . J 4 HOH A 32 2032 2032 HOH HOH . J 4 HOH A 33 2033 2033 HOH HOH . J 4 HOH A 34 2034 2034 HOH HOH . J 4 HOH A 35 2035 2035 HOH HOH . J 4 HOH A 36 2036 2036 HOH HOH . J 4 HOH A 37 2037 2037 HOH HOH . J 4 HOH A 38 2038 2038 HOH HOH . J 4 HOH A 39 2039 2039 HOH HOH . J 4 HOH A 40 2040 2040 HOH HOH . J 4 HOH A 41 2041 2041 HOH HOH . J 4 HOH A 42 2042 2042 HOH HOH . J 4 HOH A 43 2043 2043 HOH HOH . J 4 HOH A 44 2044 2044 HOH HOH . J 4 HOH A 45 2045 2045 HOH HOH . J 4 HOH A 46 2046 2046 HOH HOH . J 4 HOH A 47 2047 2047 HOH HOH . J 4 HOH A 48 2048 2048 HOH HOH . J 4 HOH A 49 2049 2049 HOH HOH . J 4 HOH A 50 2050 2050 HOH HOH . J 4 HOH A 51 2051 2051 HOH HOH . J 4 HOH A 52 2052 2052 HOH HOH . J 4 HOH A 53 2053 2053 HOH HOH . J 4 HOH A 54 2054 2054 HOH HOH . J 4 HOH A 55 2055 2055 HOH HOH . J 4 HOH A 56 2056 2056 HOH HOH . J 4 HOH A 57 2057 2057 HOH HOH . J 4 HOH A 58 2058 2058 HOH HOH . J 4 HOH A 59 2059 2059 HOH HOH . J 4 HOH A 60 2060 2060 HOH HOH . J 4 HOH A 61 2061 2061 HOH HOH . J 4 HOH A 62 2062 2062 HOH HOH . J 4 HOH A 63 2063 2063 HOH HOH . J 4 HOH A 64 2064 2064 HOH HOH . J 4 HOH A 65 2065 2065 HOH HOH . K 4 HOH C 1 2001 2001 HOH HOH . K 4 HOH C 2 2002 2002 HOH HOH . K 4 HOH C 3 2003 2003 HOH HOH . K 4 HOH C 4 2004 2004 HOH HOH . K 4 HOH C 5 2005 2005 HOH HOH . K 4 HOH C 6 2006 2006 HOH HOH . K 4 HOH C 7 2007 2007 HOH HOH . K 4 HOH C 8 2008 2008 HOH HOH . K 4 HOH C 9 2009 2009 HOH HOH . K 4 HOH C 10 2010 2010 HOH HOH . K 4 HOH C 11 2011 2011 HOH HOH . K 4 HOH C 12 2012 2012 HOH HOH . K 4 HOH C 13 2013 2013 HOH HOH . K 4 HOH C 14 2014 2014 HOH HOH . K 4 HOH C 15 2015 2015 HOH HOH . K 4 HOH C 16 2016 2016 HOH HOH . K 4 HOH C 17 2017 2017 HOH HOH . K 4 HOH C 18 2018 2018 HOH HOH . K 4 HOH C 19 2019 2019 HOH HOH . K 4 HOH C 20 2020 2020 HOH HOH . K 4 HOH C 21 2021 2021 HOH HOH . K 4 HOH C 22 2022 2022 HOH HOH . K 4 HOH C 23 2023 2023 HOH HOH . K 4 HOH C 24 2024 2024 HOH HOH . K 4 HOH C 25 2025 2025 HOH HOH . K 4 HOH C 26 2026 2026 HOH HOH . K 4 HOH C 27 2027 2027 HOH HOH . K 4 HOH C 28 2028 2028 HOH HOH . K 4 HOH C 29 2029 2029 HOH HOH . K 4 HOH C 30 2030 2030 HOH HOH . K 4 HOH C 31 2031 2031 HOH HOH . K 4 HOH C 32 2032 2032 HOH HOH . K 4 HOH C 33 2033 2033 HOH HOH . K 4 HOH C 34 2034 2034 HOH HOH . K 4 HOH C 35 2035 2035 HOH HOH . K 4 HOH C 36 2036 2036 HOH HOH . K 4 HOH C 37 2037 2037 HOH HOH . K 4 HOH C 38 2038 2038 HOH HOH . K 4 HOH C 39 2039 2039 HOH HOH . K 4 HOH C 40 2040 2040 HOH HOH . K 4 HOH C 41 2041 2041 HOH HOH . K 4 HOH C 42 2042 2042 HOH HOH . K 4 HOH C 43 2043 2043 HOH HOH . K 4 HOH C 44 2044 2044 HOH HOH . K 4 HOH C 45 2045 2045 HOH HOH . K 4 HOH C 46 2046 2046 HOH HOH . K 4 HOH C 47 2047 2047 HOH HOH . K 4 HOH C 48 2048 2048 HOH HOH . K 4 HOH C 49 2049 2049 HOH HOH . L 4 HOH E 1 2001 2001 HOH HOH . L 4 HOH E 2 2002 2002 HOH HOH . L 4 HOH E 3 2003 2003 HOH HOH . L 4 HOH E 4 2004 2004 HOH HOH . L 4 HOH E 5 2005 2005 HOH HOH . L 4 HOH E 6 2006 2006 HOH HOH . L 4 HOH E 7 2007 2007 HOH HOH . L 4 HOH E 8 2008 2008 HOH HOH . L 4 HOH E 9 2009 2009 HOH HOH . L 4 HOH E 10 2010 2010 HOH HOH . L 4 HOH E 11 2011 2011 HOH HOH . L 4 HOH E 12 2012 2012 HOH HOH . L 4 HOH E 13 2013 2013 HOH HOH . L 4 HOH E 14 2014 2014 HOH HOH . L 4 HOH E 15 2015 2015 HOH HOH . L 4 HOH E 16 2016 2016 HOH HOH . L 4 HOH E 17 2017 2017 HOH HOH . L 4 HOH E 18 2018 2018 HOH HOH . L 4 HOH E 19 2019 2019 HOH HOH . L 4 HOH E 20 2020 2020 HOH HOH . L 4 HOH E 21 2021 2021 HOH HOH . L 4 HOH E 22 2022 2022 HOH HOH . L 4 HOH E 23 2023 2023 HOH HOH . L 4 HOH E 24 2024 2024 HOH HOH . L 4 HOH E 25 2025 2025 HOH HOH . L 4 HOH E 26 2026 2026 HOH HOH . L 4 HOH E 27 2027 2027 HOH HOH . L 4 HOH E 28 2028 2028 HOH HOH . L 4 HOH E 29 2029 2029 HOH HOH . L 4 HOH E 30 2030 2030 HOH HOH . L 4 HOH E 31 2031 2031 HOH HOH . L 4 HOH E 32 2032 2032 HOH HOH . L 4 HOH E 33 2033 2033 HOH HOH . L 4 HOH E 34 2034 2034 HOH HOH . L 4 HOH E 35 2035 2035 HOH HOH . L 4 HOH E 36 2036 2036 HOH HOH . L 4 HOH E 37 2037 2037 HOH HOH . L 4 HOH E 38 2038 2038 HOH HOH . L 4 HOH E 39 2039 2039 HOH HOH . L 4 HOH E 40 2040 2040 HOH HOH . L 4 HOH E 41 2041 2041 HOH HOH . L 4 HOH E 42 2042 2042 HOH HOH . L 4 HOH E 43 2043 2043 HOH HOH . L 4 HOH E 44 2044 2044 HOH HOH . L 4 HOH E 45 2045 2045 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . H 2 45.83 -10.313 5.436 1 22.98 ? PA NAD 500 E 1 HETATM 2 O O1A NAD . . . H 2 45.054 -9.598 6.45 1 21.88 ? O1A NAD 500 E 1 HETATM 3 O O2A NAD . . . H 2 45.467 -11.74 5.273 1 24.21 ? O2A NAD 500 E 1 HETATM 4 O O5B NAD . . . H 2 47.4 -10.291 5.657 1 23.78 ? O5B NAD 500 E 1 HETATM 5 C C5B NAD . . . H 2 48.08 -9.149 6.078 1 22.81 ? C5B NAD 500 E 1 HETATM 6 C C4B NAD . . . H 2 49.35 -9.679 6.698 1 23.14 ? C4B NAD 500 E 1 HETATM 7 O O4B NAD . . . H 2 50.299 -8.651 6.542 1 23.21 ? O4B NAD 500 E 1 HETATM 8 C C3B NAD . . . H 2 49.154 -9.991 8.2 1 22.51 ? C3B NAD 500 E 1 HETATM 9 O O3B NAD . . . H 2 49.581 -11.31 8.505 1 23.59 ? O3B NAD 500 E 1 HETATM 10 C C2B NAD . . . H 2 50.015 -8.946 8.895 1 21.53 ? C2B NAD 500 E 1 HETATM 11 O O2B NAD . . . H 2 50.725 -9.379 10.037 1 19.91 ? O2B NAD 500 E 1 HETATM 12 C C1B NAD . . . H 2 50.993 -8.578 7.777 1 22.92 ? C1B NAD 500 E 1 HETATM 13 N N9A NAD . . . H 2 51.653 -7.316 8.125 1 22.91 ? N9A NAD 500 E 1 HETATM 14 C C8A NAD . . . H 2 51.095 -6.165 8.652 1 22.88 ? C8A NAD 500 E 1 HETATM 15 N N7A NAD . . . H 2 52.118 -5.308 8.868 1 24.28 ? N7A NAD 500 E 1 HETATM 16 C C5A NAD . . . H 2 53.298 -5.893 8.492 1 23.68 ? C5A NAD 500 E 1 HETATM 17 C C6A NAD . . . H 2 54.631 -5.477 8.483 1 23.32 ? C6A NAD 500 E 1 HETATM 18 N N6A NAD . . . H 2 54.954 -4.281 8.95 1 24.39 ? N6A NAD 500 E 1 HETATM 19 N N1A NAD . . . H 2 55.637 -6.309 8.017 1 23.3 ? N1A NAD 500 E 1 HETATM 20 C C2A NAD . . . H 2 55.313 -7.573 7.555 1 23.83 ? C2A NAD 500 E 1 HETATM 21 N N3A NAD . . . H 2 53.985 -7.991 7.578 1 23.5 ? N3A NAD 500 E 1 HETATM 22 C C4A NAD . . . H 2 53.007 -7.165 8.031 1 22.6 ? C4A NAD 500 E 1 HETATM 23 O O3 NAD . . . H 2 45.696 -9.407 4.12 1 25.31 ? O3 NAD 500 E 1 HETATM 24 P PN NAD . . . H 2 45.525 -10.034 2.656 1 25.44 ? PN NAD 500 E 1 HETATM 25 O O1N NAD . . . H 2 44.08 -10.317 2.447 1 22.71 ? O1N NAD 500 E 1 HETATM 26 O O2N NAD . . . H 2 46.568 -11.09 2.565 1 24.86 ? O2N NAD 500 E 1 HETATM 27 O O5D NAD . . . H 2 45.898 -8.759 1.745 1 25.15 ? O5D NAD 500 E 1 HETATM 28 C C5D NAD . . . H 2 47.112 -8.032 1.814 1 25.02 ? C5D NAD 500 E 1 HETATM 29 C C4D NAD . . . H 2 47.051 -6.853 0.825 1 24.81 ? C4D NAD 500 E 1 HETATM 30 O O4D NAD . . . H 2 46.67 -7.269 -0.479 1 23.84 ? O4D NAD 500 E 1 HETATM 31 C C3D NAD . . . H 2 45.985 -5.838 1.254 1 25.5 ? C3D NAD 500 E 1 HETATM 32 O O3D NAD . . . H 2 46.444 -4.5 1.186 1 23.06 ? O3D NAD 500 E 1 HETATM 33 C C2D NAD . . . H 2 44.847 -6.079 0.277 1 23.69 ? C2D NAD 500 E 1 HETATM 34 O O2D NAD . . . H 2 44.06 -4.927 0.141 1 24.43 ? O2D NAD 500 E 1 HETATM 35 C C1D NAD . . . H 2 45.65 -6.408 -0.966 1 23.83 ? C1D NAD 500 E 1 HETATM 36 N N1N NAD . . . H 2 44.819 -6.982 -2.046 1 24.7 ? N1N NAD 500 E 1 HETATM 37 C C2N NAD . . . H 2 44.737 -6.284 -3.214 1 24.09 ? C2N NAD 500 E 1 HETATM 38 C C3N NAD . . . H 2 43.964 -6.759 -4.284 1 24.43 ? C3N NAD 500 E 1 HETATM 39 C C7N NAD . . . H 2 43.837 -5.927 -5.535 1 23.66 ? C7N NAD 500 E 1 HETATM 40 O O7N NAD . . . H 2 44.342 -6.427 -6.732 1 22.96 ? O7N NAD 500 E 1 HETATM 41 N N7N NAD . . . H 2 43.244 -4.727 -5.5 1 26.99 ? N7N NAD 500 E 1 HETATM 42 C C4N NAD . . . H 2 43.255 -7.949 -4.141 1 21.47 ? C4N NAD 500 E 1 HETATM 43 C C5N NAD . . . H 2 43.339 -8.634 -2.936 1 21.51 ? C5N NAD 500 E 1 HETATM 44 C C6N NAD . . . H 2 44.116 -8.161 -1.888 1 22.15 ? C6N NAD 500 E 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 29 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 44 #