data_2VOJ # _model_server_result.job_id FtEZGmAzDWwejhDOxm2ORg _model_server_result.datetime_utc '2024-11-16 07:19:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2voj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":501}' # _entry.id 2VOJ # _exptl.entry_id 2VOJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 90.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-2-HYDROXYPROPANOIC ACID' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2VOJ _cell.length_a 88.993 _cell.length_b 88.993 _cell.length_c 373.855 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2VOJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_645 y+1,x-1,-z 0 1 0 1 0 0 0 0 -1 88.993 -88.993 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 G N N ? 3 I N N # _chem_comp.formula 'C3 H6 O3' _chem_comp.formula_weight 90.078 _chem_comp.id 2OP _chem_comp.mon_nstd_flag . _chem_comp.name '(2S)-2-HYDROXYPROPANOIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O 2OP doub 1 n n C CA 2OP sing 2 n n CB CA 2OP sing 3 n n CB HB1 2OP sing 4 n n CB HB2 2OP sing 5 n n CB HB3 2OP sing 6 n n OHN CA 2OP sing 7 n n C OXT 2OP sing 8 n n OHN H 2OP sing 9 n n CA HA 2OP sing 10 n n OXT HXT 2OP sing 11 n n # _atom_sites.entry_id 2VOJ _atom_sites.fract_transf_matrix[1][1] 0.011237 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011237 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002675 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 NAD A 1 500 500 NAD NAD . E 3 2OP A 1 501 501 2OP 2OP . F 2 NAD C 1 500 500 NAD NAD . G 3 2OP C 1 501 501 2OP 2OP . H 2 NAD E 1 500 500 NAD NAD . I 3 2OP E 1 501 501 2OP 2OP . J 4 HOH A 1 2001 2001 HOH HOH . J 4 HOH A 2 2002 2002 HOH HOH . J 4 HOH A 3 2003 2003 HOH HOH . J 4 HOH A 4 2004 2004 HOH HOH . J 4 HOH A 5 2005 2005 HOH HOH . J 4 HOH A 6 2006 2006 HOH HOH . J 4 HOH A 7 2007 2007 HOH HOH . J 4 HOH A 8 2008 2008 HOH HOH . J 4 HOH A 9 2009 2009 HOH HOH . J 4 HOH A 10 2010 2010 HOH HOH . J 4 HOH A 11 2011 2011 HOH HOH . J 4 HOH A 12 2012 2012 HOH HOH . J 4 HOH A 13 2013 2013 HOH HOH . J 4 HOH A 14 2014 2014 HOH HOH . J 4 HOH A 15 2015 2015 HOH HOH . J 4 HOH A 16 2016 2016 HOH HOH . J 4 HOH A 17 2017 2017 HOH HOH . J 4 HOH A 18 2018 2018 HOH HOH . J 4 HOH A 19 2019 2019 HOH HOH . J 4 HOH A 20 2020 2020 HOH HOH . J 4 HOH A 21 2021 2021 HOH HOH . J 4 HOH A 22 2022 2022 HOH HOH . J 4 HOH A 23 2023 2023 HOH HOH . J 4 HOH A 24 2024 2024 HOH HOH . J 4 HOH A 25 2025 2025 HOH HOH . J 4 HOH A 26 2026 2026 HOH HOH . J 4 HOH A 27 2027 2027 HOH HOH . J 4 HOH A 28 2028 2028 HOH HOH . J 4 HOH A 29 2029 2029 HOH HOH . J 4 HOH A 30 2030 2030 HOH HOH . J 4 HOH A 31 2031 2031 HOH HOH . J 4 HOH A 32 2032 2032 HOH HOH . J 4 HOH A 33 2033 2033 HOH HOH . J 4 HOH A 34 2034 2034 HOH HOH . J 4 HOH A 35 2035 2035 HOH HOH . J 4 HOH A 36 2036 2036 HOH HOH . J 4 HOH A 37 2037 2037 HOH HOH . J 4 HOH A 38 2038 2038 HOH HOH . J 4 HOH A 39 2039 2039 HOH HOH . J 4 HOH A 40 2040 2040 HOH HOH . J 4 HOH A 41 2041 2041 HOH HOH . J 4 HOH A 42 2042 2042 HOH HOH . J 4 HOH A 43 2043 2043 HOH HOH . J 4 HOH A 44 2044 2044 HOH HOH . J 4 HOH A 45 2045 2045 HOH HOH . J 4 HOH A 46 2046 2046 HOH HOH . J 4 HOH A 47 2047 2047 HOH HOH . J 4 HOH A 48 2048 2048 HOH HOH . J 4 HOH A 49 2049 2049 HOH HOH . J 4 HOH A 50 2050 2050 HOH HOH . J 4 HOH A 51 2051 2051 HOH HOH . J 4 HOH A 52 2052 2052 HOH HOH . J 4 HOH A 53 2053 2053 HOH HOH . J 4 HOH A 54 2054 2054 HOH HOH . J 4 HOH A 55 2055 2055 HOH HOH . J 4 HOH A 56 2056 2056 HOH HOH . J 4 HOH A 57 2057 2057 HOH HOH . J 4 HOH A 58 2058 2058 HOH HOH . J 4 HOH A 59 2059 2059 HOH HOH . J 4 HOH A 60 2060 2060 HOH HOH . J 4 HOH A 61 2061 2061 HOH HOH . J 4 HOH A 62 2062 2062 HOH HOH . J 4 HOH A 63 2063 2063 HOH HOH . J 4 HOH A 64 2064 2064 HOH HOH . J 4 HOH A 65 2065 2065 HOH HOH . K 4 HOH C 1 2001 2001 HOH HOH . K 4 HOH C 2 2002 2002 HOH HOH . K 4 HOH C 3 2003 2003 HOH HOH . K 4 HOH C 4 2004 2004 HOH HOH . K 4 HOH C 5 2005 2005 HOH HOH . K 4 HOH C 6 2006 2006 HOH HOH . K 4 HOH C 7 2007 2007 HOH HOH . K 4 HOH C 8 2008 2008 HOH HOH . K 4 HOH C 9 2009 2009 HOH HOH . K 4 HOH C 10 2010 2010 HOH HOH . K 4 HOH C 11 2011 2011 HOH HOH . K 4 HOH C 12 2012 2012 HOH HOH . K 4 HOH C 13 2013 2013 HOH HOH . K 4 HOH C 14 2014 2014 HOH HOH . K 4 HOH C 15 2015 2015 HOH HOH . K 4 HOH C 16 2016 2016 HOH HOH . K 4 HOH C 17 2017 2017 HOH HOH . K 4 HOH C 18 2018 2018 HOH HOH . K 4 HOH C 19 2019 2019 HOH HOH . K 4 HOH C 20 2020 2020 HOH HOH . K 4 HOH C 21 2021 2021 HOH HOH . K 4 HOH C 22 2022 2022 HOH HOH . K 4 HOH C 23 2023 2023 HOH HOH . K 4 HOH C 24 2024 2024 HOH HOH . K 4 HOH C 25 2025 2025 HOH HOH . K 4 HOH C 26 2026 2026 HOH HOH . K 4 HOH C 27 2027 2027 HOH HOH . K 4 HOH C 28 2028 2028 HOH HOH . K 4 HOH C 29 2029 2029 HOH HOH . K 4 HOH C 30 2030 2030 HOH HOH . K 4 HOH C 31 2031 2031 HOH HOH . K 4 HOH C 32 2032 2032 HOH HOH . K 4 HOH C 33 2033 2033 HOH HOH . K 4 HOH C 34 2034 2034 HOH HOH . K 4 HOH C 35 2035 2035 HOH HOH . K 4 HOH C 36 2036 2036 HOH HOH . K 4 HOH C 37 2037 2037 HOH HOH . K 4 HOH C 38 2038 2038 HOH HOH . K 4 HOH C 39 2039 2039 HOH HOH . K 4 HOH C 40 2040 2040 HOH HOH . K 4 HOH C 41 2041 2041 HOH HOH . K 4 HOH C 42 2042 2042 HOH HOH . K 4 HOH C 43 2043 2043 HOH HOH . K 4 HOH C 44 2044 2044 HOH HOH . K 4 HOH C 45 2045 2045 HOH HOH . K 4 HOH C 46 2046 2046 HOH HOH . K 4 HOH C 47 2047 2047 HOH HOH . K 4 HOH C 48 2048 2048 HOH HOH . K 4 HOH C 49 2049 2049 HOH HOH . L 4 HOH E 1 2001 2001 HOH HOH . L 4 HOH E 2 2002 2002 HOH HOH . L 4 HOH E 3 2003 2003 HOH HOH . L 4 HOH E 4 2004 2004 HOH HOH . L 4 HOH E 5 2005 2005 HOH HOH . L 4 HOH E 6 2006 2006 HOH HOH . L 4 HOH E 7 2007 2007 HOH HOH . L 4 HOH E 8 2008 2008 HOH HOH . L 4 HOH E 9 2009 2009 HOH HOH . L 4 HOH E 10 2010 2010 HOH HOH . L 4 HOH E 11 2011 2011 HOH HOH . L 4 HOH E 12 2012 2012 HOH HOH . L 4 HOH E 13 2013 2013 HOH HOH . L 4 HOH E 14 2014 2014 HOH HOH . L 4 HOH E 15 2015 2015 HOH HOH . L 4 HOH E 16 2016 2016 HOH HOH . L 4 HOH E 17 2017 2017 HOH HOH . L 4 HOH E 18 2018 2018 HOH HOH . L 4 HOH E 19 2019 2019 HOH HOH . L 4 HOH E 20 2020 2020 HOH HOH . L 4 HOH E 21 2021 2021 HOH HOH . L 4 HOH E 22 2022 2022 HOH HOH . L 4 HOH E 23 2023 2023 HOH HOH . L 4 HOH E 24 2024 2024 HOH HOH . L 4 HOH E 25 2025 2025 HOH HOH . L 4 HOH E 26 2026 2026 HOH HOH . L 4 HOH E 27 2027 2027 HOH HOH . L 4 HOH E 28 2028 2028 HOH HOH . L 4 HOH E 29 2029 2029 HOH HOH . L 4 HOH E 30 2030 2030 HOH HOH . L 4 HOH E 31 2031 2031 HOH HOH . L 4 HOH E 32 2032 2032 HOH HOH . L 4 HOH E 33 2033 2033 HOH HOH . L 4 HOH E 34 2034 2034 HOH HOH . L 4 HOH E 35 2035 2035 HOH HOH . L 4 HOH E 36 2036 2036 HOH HOH . L 4 HOH E 37 2037 2037 HOH HOH . L 4 HOH E 38 2038 2038 HOH HOH . L 4 HOH E 39 2039 2039 HOH HOH . L 4 HOH E 40 2040 2040 HOH HOH . L 4 HOH E 41 2041 2041 HOH HOH . L 4 HOH E 42 2042 2042 HOH HOH . L 4 HOH E 43 2043 2043 HOH HOH . L 4 HOH E 44 2044 2044 HOH HOH . L 4 HOH E 45 2045 2045 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C 2OP . . . I 3 39.8 -5.947 -6.017 1 28.56 ? C 2OP 501 E 1 HETATM 2 O O 2OP . . . I 3 39.837 -7.256 -6.087 1 28.73 ? O 2OP 501 E 1 HETATM 3 C CB 2OP . . . I 3 40.189 -6.064 -3.507 1 27.12 ? CB 2OP 501 E 1 HETATM 4 O OHN 2OP . . . I 3 39.755 -4.013 -4.695 1 29.55 ? OHN 2OP 501 E 1 HETATM 5 C CA 2OP . . . I 3 39.912 -5.304 -4.773 1 28.71 ? CA 2OP 501 E 1 HETATM 6 O OXT 2OP . . . I 3 39.639 -5.27 -7.126 1 25.12 ? OXT 2OP 501 E 1 # _model_server_stats.io_time_ms 55 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 248 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 6 #