data_2VP1 # _model_server_result.job_id Jkul-iaeUplhLNCGFHy_sw _model_server_result.datetime_utc '2024-11-07 18:55:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2vp1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":1349}' # _entry.id 2VP1 # _exptl.entry_id 2VP1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 195.237 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-(N-MORPHOLINO)-ETHANESULFONIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 98.5 _cell.angle_gamma 90 _cell.entry_id 2VP1 _cell.length_a 75.34 _cell.length_b 51.6 _cell.length_c 100.74 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2VP1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS monomeric 1 author_and_software_defined_assembly 1 PQS monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 43 A HIS 43 1_555 C FE FE . A FE 1347 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? metalc ? metalc2 A OH TYR 44 A TYR 44 1_555 C FE FE . A FE 1347 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.989 ? metalc ? metalc3 A OH TYR 169 A TYR 169 1_555 C FE FE . A FE 1347 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? metalc ? metalc4 A OH TYR 225 A TYR 225 1_555 C FE FE . A FE 1347 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? metalc ? metalc5 A OH TYR 226 A TYR 226 1_555 C FE FE . A FE 1347 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? metalc ? metalc6 B NE2 HIS 43 B HIS 43 1_555 F FE FE . B FE 1347 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? metalc ? metalc7 B OH TYR 44 B TYR 44 1_555 F FE FE . B FE 1347 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? metalc ? metalc8 B OH TYR 169 B TYR 169 1_555 F FE FE . B FE 1347 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? metalc ? metalc9 B OH TYR 225 B TYR 225 1_555 F FE FE . B FE 1347 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.949 ? metalc ? metalc10 B OH TYR 226 B TYR 226 1_555 F FE FE . B FE 1347 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? # _chem_comp.formula 'C6 H13 N O4 S' _chem_comp.formula_weight 195.237 _chem_comp.id MES _chem_comp.mon_nstd_flag . _chem_comp.name '2-(N-MORPHOLINO)-ETHANESULFONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C2 MES sing 205 n n O1 C6 MES sing 206 n n C2 C3 MES sing 207 n n C2 H21 MES sing 208 n n C2 H22 MES sing 209 n n C3 N4 MES sing 210 n n C3 H31 MES sing 211 n n C3 H32 MES sing 212 n n N4 C5 MES sing 213 n n N4 C7 MES sing 214 n n N4 HN4 MES sing 215 n n C5 C6 MES sing 216 n n C5 H51 MES sing 217 n n C5 H52 MES sing 218 n n C6 H61 MES sing 219 n n C6 H62 MES sing 220 n n C7 C8 MES sing 221 n n C7 H71 MES sing 222 n n C7 H72 MES sing 223 n n C8 S MES sing 224 n n C8 H81 MES sing 225 n n C8 H82 MES sing 226 n n S O1S MES doub 227 n n S O2S MES doub 228 n n S O3S MES sing 229 n n # _atom_sites.entry_id 2VP1 _atom_sites.fract_transf_matrix[1][1] 0.013273 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001984 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01938 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010037 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FE A 1 1347 1347 FE FE . D 3 CL A 1 1348 1348 CL CL . E 4 MES A 1 1349 1349 MES MES . F 2 FE B 1 1347 1347 FE FE . G 3 CL B 1 1348 1348 CL CL . H 4 MES B 1 1349 1349 MES MES . I 5 HOH A 1 2001 2001 HOH HOH . I 5 HOH A 2 2002 2002 HOH HOH . I 5 HOH A 3 2003 2003 HOH HOH . I 5 HOH A 4 2004 2004 HOH HOH . I 5 HOH A 5 2005 2005 HOH HOH . I 5 HOH A 6 2006 2006 HOH HOH . I 5 HOH A 7 2007 2007 HOH HOH . I 5 HOH A 8 2008 2008 HOH HOH . I 5 HOH A 9 2009 2009 HOH HOH . J 5 HOH B 1 2001 2001 HOH HOH . J 5 HOH B 2 2002 2002 HOH HOH . J 5 HOH B 3 2003 2003 HOH HOH . J 5 HOH B 4 2004 2004 HOH HOH . J 5 HOH B 5 2005 2005 HOH HOH . J 5 HOH B 6 2006 2006 HOH HOH . J 5 HOH B 7 2007 2007 HOH HOH . J 5 HOH B 8 2008 2008 HOH HOH . J 5 HOH B 9 2009 2009 HOH HOH . J 5 HOH B 10 2010 2010 HOH HOH . J 5 HOH B 11 2011 2011 HOH HOH . J 5 HOH B 12 2012 2012 HOH HOH . J 5 HOH B 13 2013 2013 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 MES . . . H 4 -36.192 10.58 -61.763 1 45.82 ? O1 MES 1349 B 1 HETATM 2 C C2 MES . . . H 4 -37.083 9.456 -61.484 1 45.83 ? C2 MES 1349 B 1 HETATM 3 C C3 MES . . . H 4 -37.241 9.243 -59.974 1 45.69 ? C3 MES 1349 B 1 HETATM 4 N N4 MES . . . H 4 -35.913 9.174 -59.319 1 45.48 ? N4 MES 1349 B 1 HETATM 5 C C5 MES . . . H 4 -34.969 10.263 -59.687 1 44.98 ? C5 MES 1349 B 1 HETATM 6 C C6 MES . . . H 4 -34.861 10.414 -61.206 1 45.23 ? C6 MES 1349 B 1 HETATM 7 C C7 MES . . . H 4 -36.132 9.178 -57.867 1 44.06 ? C7 MES 1349 B 1 HETATM 8 C C8 MES . . . H 4 -34.928 8.52 -57.204 1 43.88 ? C8 MES 1349 B 1 HETATM 9 S S MES . . . H 4 -34.882 8.748 -55.399 1 42.44 ? S MES 1349 B 1 HETATM 10 O O1S MES . . . H 4 -34.369 10.127 -55.156 1 42.63 ? O1S MES 1349 B 1 HETATM 11 O O2S MES . . . H 4 -33.957 7.728 -54.813 1 41.36 -1 O2S MES 1349 B 1 HETATM 12 O O3S MES . . . H 4 -36.272 8.61 -54.845 1 41.97 ? O3S MES 1349 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 39 _model_server_stats.query_time_ms 340 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 12 #