data_2VPR # _model_server_result.job_id zfPfWaN3Fl0VK0o-PxDODw _model_server_result.datetime_utc '2025-02-27 18:49:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2vpr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1206}' # _entry.id 2VPR # _exptl.entry_id 2VPR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 426.419 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5A,6-ANHYDROTETRACYCLINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2VPR _cell.length_a 56.361 _cell.length_b 108.744 _cell.length_c 68.976 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2VPR _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_566 x,-y+1,-z+1 1 0 0 0 -1 0 0 0 -1 0 108.744 68.976 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 100 A HIS 100 1_555 C MG MG . A MG 1207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? metalc ? metalc2 B O11 TDC . A TDC 1206 1_555 C MG MG . A MG 1207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? metalc ? metalc3 B O12 TDC . A TDC 1206 1_555 C MG MG . A MG 1207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? metalc ? metalc4 C MG MG . A MG 1207 1_555 E O HOH . A HOH 2015 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.966 ? metalc ? metalc5 C MG MG . A MG 1207 1_555 E O HOH . A HOH 2016 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.982 ? metalc ? metalc6 C MG MG . A MG 1207 1_555 E O HOH . A HOH 2017 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.954 ? # _chem_comp.formula 'C22 H22 N2 O7' _chem_comp.formula_weight 426.419 _chem_comp.id TDC _chem_comp.mon_nstd_flag . _chem_comp.name 5A,6-ANHYDROTETRACYCLINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O12 C12 TDC doub 294 n n C12 C1B TDC sing 295 n n C12 C1C TDC sing 296 n n C1B C11 TDC sing 297 n y C1B C51 TDC doub 298 n y C11 O11 TDC sing 299 n n C11 C1A TDC doub 300 n y C1A C10 TDC sing 301 n y C1A C61 TDC sing 302 n y C10 O10 TDC sing 303 n n C10 C9 TDC doub 304 n y C9 C8 TDC sing 305 n y C8 C7 TDC doub 306 n y C7 C61 TDC sing 307 n y C61 C6 TDC doub 308 n y C6 C62 TDC sing 309 n n C6 C51 TDC sing 310 n y C51 C5 TDC sing 311 n n C5 C41 TDC sing 312 n n C1C C1 TDC sing 313 n n C1C O1C TDC sing 314 n n C1C C41 TDC sing 315 n n C1 O1 TDC doub 316 n n C1 C2 TDC sing 317 n n C41 C4 TDC sing 318 n n C4 N4 TDC sing 319 n n C4 C3 TDC sing 320 n n N4 C43 TDC sing 321 n n N4 C42 TDC sing 322 n n C3 O3 TDC sing 323 n n C3 C2 TDC doub 324 n n C2 C21 TDC sing 325 n n C21 O21 TDC doub 326 n n C21 N21 TDC sing 327 n n O11 H11 TDC sing 328 n n O10 H10 TDC sing 329 n n C9 H9 TDC sing 330 n n C8 H8 TDC sing 331 n n C7 H7 TDC sing 332 n n C62 H621 TDC sing 333 n n C62 H622 TDC sing 334 n n C62 H623 TDC sing 335 n n C5 H5C1 TDC sing 336 n n C5 H5C2 TDC sing 337 n n C41 H41 TDC sing 338 n n O1C H1C TDC sing 339 n n C4 H4 TDC sing 340 n n C43 H431 TDC sing 341 n n C43 H432 TDC sing 342 n n C43 H433 TDC sing 343 n n C42 H421 TDC sing 344 n n C42 H422 TDC sing 345 n n C42 H423 TDC sing 346 n n O3 H3 TDC sing 347 n n N21 H211 TDC sing 348 n n N21 H212 TDC sing 349 n n # _atom_sites.entry_id 2VPR _atom_sites.fract_transf_matrix[1][1] 0.017743 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009196 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014498 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 TDC A 1 1206 1206 TDC TDC . C 3 MG A 1 1207 1207 MG MG . D 4 SO4 A 1 1208 1208 SO4 SO4 . E 5 HOH A 1 2001 2001 HOH HOH . E 5 HOH A 2 2002 2002 HOH HOH . E 5 HOH A 3 2003 2003 HOH HOH . E 5 HOH A 4 2004 2004 HOH HOH . E 5 HOH A 5 2005 2005 HOH HOH . E 5 HOH A 6 2006 2006 HOH HOH . E 5 HOH A 7 2007 2007 HOH HOH . E 5 HOH A 8 2008 2008 HOH HOH . E 5 HOH A 9 2009 2009 HOH HOH . E 5 HOH A 10 2010 2010 HOH HOH . E 5 HOH A 11 2011 2011 HOH HOH . E 5 HOH A 12 2012 2012 HOH HOH . E 5 HOH A 13 2013 2013 HOH HOH . E 5 HOH A 14 2014 2014 HOH HOH . E 5 HOH A 15 2015 2015 HOH HOH . E 5 HOH A 16 2016 2016 HOH HOH . E 5 HOH A 17 2017 2017 HOH HOH . E 5 HOH A 18 2018 2018 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O12 TDC . . . B 2 3.612 42.919 33.239 1 24.75 ? O12 TDC 1206 A 1 HETATM 2 C C12 TDC . . . B 2 4.73 42.335 33.297 1 25.84 ? C12 TDC 1206 A 1 HETATM 3 C C1B TDC . . . B 2 5.298 41.848 34.589 1 26.57 ? C1B TDC 1206 A 1 HETATM 4 C C11 TDC . . . B 2 4.574 42.011 35.772 1 27.18 ? C11 TDC 1206 A 1 HETATM 5 O O11 TDC . . . B 2 3.28 42.605 35.78 1 26.88 ? O11 TDC 1206 A 1 HETATM 6 C C1A TDC . . . B 2 5.126 41.53 36.965 1 25.73 ? C1A TDC 1206 A 1 HETATM 7 C C10 TDC . . . B 2 4.421 41.649 38.163 1 26.15 ? C10 TDC 1206 A 1 HETATM 8 O O10 TDC . . . B 2 3.16 42.248 38.206 1 26.54 ? O10 TDC 1206 A 1 HETATM 9 C C9 TDC . . . B 2 5.034 41.135 39.432 1 27.12 ? C9 TDC 1206 A 1 HETATM 10 C C8 TDC . . . B 2 6.297 40.533 39.399 1 26.57 ? C8 TDC 1206 A 1 HETATM 11 C C7 TDC . . . B 2 6.953 40.426 38.165 1 26.61 ? C7 TDC 1206 A 1 HETATM 12 C C61 TDC . . . B 2 6.387 40.917 36.965 1 26.1 ? C61 TDC 1206 A 1 HETATM 13 C C6 TDC . . . B 2 7.11 40.772 35.77 1 26.9 ? C6 TDC 1206 A 1 HETATM 14 C C62 TDC . . . B 2 8.489 40.129 35.769 1 26.67 ? C62 TDC 1206 A 1 HETATM 15 C C51 TDC . . . B 2 6.572 41.263 34.579 1 26.8 ? C51 TDC 1206 A 1 HETATM 16 C C5 TDC . . . B 2 7.352 41.138 33.25 1 26.91 ? C5 TDC 1206 A 1 HETATM 17 C C1C TDC . . . B 2 5.476 42.14 32.009 1 26.06 ? C1C TDC 1206 A 1 HETATM 18 C C1 TDC . . . B 2 5.145 40.796 31.319 1 27.33 ? C1 TDC 1206 A 1 HETATM 19 O O1 TDC . . . B 2 4.233 40.058 31.701 1 28.4 ? O1 TDC 1206 A 1 HETATM 20 O O1C TDC . . . B 2 5.133 43.207 31.155 1 29.11 ? O1C TDC 1206 A 1 HETATM 21 C C41 TDC . . . B 2 6.964 42.228 32.228 1 26.04 ? C41 TDC 1206 A 1 HETATM 22 C C4 TDC . . . B 2 7.811 42.058 30.939 1 25.28 ? C4 TDC 1206 A 1 HETATM 23 N N4 TDC . . . B 2 8.414 43.29 30.297 1 24.43 ? N4 TDC 1206 A 1 HETATM 24 C C43 TDC . . . B 2 9.486 43.771 31.244 1 14.21 ? C43 TDC 1206 A 1 HETATM 25 C C42 TDC . . . B 2 7.417 44.357 29.895 1 21.13 ? C42 TDC 1206 A 1 HETATM 26 C C3 TDC . . . B 2 7.156 41.093 29.914 1 26.09 ? C3 TDC 1206 A 1 HETATM 27 O O3 TDC . . . B 2 7.762 40.794 28.886 1 28.54 ? O3 TDC 1206 A 1 HETATM 28 C C2 TDC . . . B 2 5.901 40.458 30.139 1 27.4 ? C2 TDC 1206 A 1 HETATM 29 C C21 TDC . . . B 2 5.445 39.448 29.175 1 25.8 ? C21 TDC 1206 A 1 HETATM 30 O O21 TDC . . . B 2 6.263 38.953 28.399 1 30.38 ? O21 TDC 1206 A 1 HETATM 31 N N21 TDC . . . B 2 4.255 38.88 29.17 1 26.67 ? N21 TDC 1206 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 31 #