data_2VQ1 # _model_server_result.job_id oXRhuFqZwJNpHhCRVKPdow _model_server_result.datetime_utc '2025-09-14 13:38:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2vq1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":1214}' # _entry.id 2VQ1 # _exptl.entry_id 2VQ1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 75.067 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCINE _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.07 _cell.angle_gamma 90 _cell.entry_id 2VQ1 _cell.length_a 51.384 _cell.length_b 161.015 _cell.length_c 53.48 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2VQ1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,I,J,Q,R 1 1 C,D,K,L,M,N,O,P,S,T 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 I N N ? 3 K N N ? 3 L N N ? 3 M N N ? 3 N N N ? 3 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 23 A CYS 23 1_555 A SG CYS 93 A CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf2 A SG CYS 139 A CYS 134 1_555 A SG CYS 199 A CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf3 B SG CYS 22 B CYS 22 1_555 B SG CYS 97 B CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf4 C SG CYS 23 E CYS 23 1_555 C SG CYS 93 E CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf5 C SG CYS 139 E CYS 134 1_555 C SG CYS 199 E CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? disulf ? disulf6 D SG CYS 22 F CYS 22 1_555 D SG CYS 97 F CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf7 D SG CYS 145 F CYS 140 1_555 D SG CYS 200 F CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? # _chem_comp.formula 'C2 H5 N O2' _chem_comp.formula_weight 75.067 _chem_comp.id GLY _chem_comp.mon_nstd_flag y _chem_comp.name GLYCINE _chem_comp.type 'peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA GLY sing 122 n n N H GLY sing 123 n n N H2 GLY sing 124 n n CA C GLY sing 125 n n CA HA2 GLY sing 126 n n CA HA3 GLY sing 127 n n C O GLY doub 128 n n C OXT GLY sing 129 n n OXT HXT GLY sing 130 n n # _atom_sites.entry_id 2VQ1 _atom_sites.fract_transf_matrix[1][1] 0.019461 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004518 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006211 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019196 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 GLY A 1 1213 1213 GLY GLY . F 3 GLY A 1 1214 1214 GLY GLY . G 4 GOL A 1 1215 1215 GOL GOL . H 5 AZI A 1 1216 1216 AZI AZI . I 3 GLY B 1 1214 1214 GLY GLY . J 4 GOL B 1 1215 1215 GOL GOL . K 3 GLY E 1 1213 1213 GLY GLY . L 3 GLY E 1 1214 1214 GLY GLY . M 3 GLY E 1 1215 1215 GLY GLY . N 3 GLY F 1 1214 1214 GLY GLY . O 3 GLY F 1 1215 1215 GLY GLY . P 4 GOL F 1 1216 1216 GOL GOL . Q 6 HOH A 1 2001 2001 HOH HOH . Q 6 HOH A 2 2002 2002 HOH HOH . Q 6 HOH A 3 2003 2003 HOH HOH . Q 6 HOH A 4 2004 2004 HOH HOH . Q 6 HOH A 5 2005 2005 HOH HOH . Q 6 HOH A 6 2006 2006 HOH HOH . Q 6 HOH A 7 2007 2007 HOH HOH . Q 6 HOH A 8 2008 2008 HOH HOH . Q 6 HOH A 9 2009 2009 HOH HOH . Q 6 HOH A 10 2010 2010 HOH HOH . Q 6 HOH A 11 2011 2011 HOH HOH . Q 6 HOH A 12 2012 2012 HOH HOH . Q 6 HOH A 13 2013 2013 HOH HOH . Q 6 HOH A 14 2014 2014 HOH HOH . Q 6 HOH A 15 2015 2015 HOH HOH . Q 6 HOH A 16 2016 2016 HOH HOH . Q 6 HOH A 17 2017 2017 HOH HOH . Q 6 HOH A 18 2018 2018 HOH HOH . Q 6 HOH A 19 2019 2019 HOH HOH . Q 6 HOH A 20 2020 2020 HOH HOH . Q 6 HOH A 21 2021 2021 HOH HOH . Q 6 HOH A 22 2022 2022 HOH HOH . Q 6 HOH A 23 2023 2023 HOH HOH . Q 6 HOH A 24 2024 2024 HOH HOH . Q 6 HOH A 25 2025 2025 HOH HOH . Q 6 HOH A 26 2026 2026 HOH HOH . Q 6 HOH A 27 2027 2027 HOH HOH . Q 6 HOH A 28 2028 2028 HOH HOH . Q 6 HOH A 29 2029 2029 HOH HOH . Q 6 HOH A 30 2030 2030 HOH HOH . Q 6 HOH A 31 2031 2031 HOH HOH . Q 6 HOH A 32 2032 2032 HOH HOH . Q 6 HOH A 33 2033 2033 HOH HOH . Q 6 HOH A 34 2034 2034 HOH HOH . Q 6 HOH A 35 2035 2035 HOH HOH . Q 6 HOH A 36 2036 2036 HOH HOH . Q 6 HOH A 37 2037 2037 HOH HOH . Q 6 HOH A 38 2038 2038 HOH HOH . Q 6 HOH A 39 2039 2039 HOH HOH . Q 6 HOH A 40 2040 2040 HOH HOH . Q 6 HOH A 41 2041 2041 HOH HOH . Q 6 HOH A 42 2042 2042 HOH HOH . Q 6 HOH A 43 2043 2043 HOH HOH . Q 6 HOH A 44 2044 2044 HOH HOH . Q 6 HOH A 45 2045 2045 HOH HOH . Q 6 HOH A 46 2046 2046 HOH HOH . Q 6 HOH A 47 2047 2047 HOH HOH . Q 6 HOH A 48 2048 2048 HOH HOH . Q 6 HOH A 49 2049 2049 HOH HOH . Q 6 HOH A 50 2050 2050 HOH HOH . Q 6 HOH A 51 2051 2051 HOH HOH . Q 6 HOH A 52 2052 2052 HOH HOH . Q 6 HOH A 53 2053 2053 HOH HOH . Q 6 HOH A 54 2054 2054 HOH HOH . Q 6 HOH A 55 2055 2055 HOH HOH . Q 6 HOH A 56 2056 2056 HOH HOH . Q 6 HOH A 57 2057 2057 HOH HOH . R 6 HOH B 1 2001 2001 HOH HOH . R 6 HOH B 2 2002 2002 HOH HOH . R 6 HOH B 3 2003 2003 HOH HOH . R 6 HOH B 4 2004 2004 HOH HOH . R 6 HOH B 5 2005 2005 HOH HOH . R 6 HOH B 6 2006 2006 HOH HOH . R 6 HOH B 7 2007 2007 HOH HOH . R 6 HOH B 8 2008 2008 HOH HOH . R 6 HOH B 9 2009 2009 HOH HOH . R 6 HOH B 10 2010 2010 HOH HOH . R 6 HOH B 11 2011 2011 HOH HOH . R 6 HOH B 12 2012 2012 HOH HOH . R 6 HOH B 13 2013 2013 HOH HOH . R 6 HOH B 14 2014 2014 HOH HOH . R 6 HOH B 15 2015 2015 HOH HOH . R 6 HOH B 16 2016 2016 HOH HOH . R 6 HOH B 17 2017 2017 HOH HOH . R 6 HOH B 18 2018 2018 HOH HOH . R 6 HOH B 19 2019 2019 HOH HOH . R 6 HOH B 20 2020 2020 HOH HOH . R 6 HOH B 21 2021 2021 HOH HOH . R 6 HOH B 22 2022 2022 HOH HOH . R 6 HOH B 23 2023 2023 HOH HOH . R 6 HOH B 24 2024 2024 HOH HOH . R 6 HOH B 25 2025 2025 HOH HOH . R 6 HOH B 26 2026 2026 HOH HOH . R 6 HOH B 27 2027 2027 HOH HOH . R 6 HOH B 28 2028 2028 HOH HOH . R 6 HOH B 29 2029 2029 HOH HOH . R 6 HOH B 30 2030 2030 HOH HOH . R 6 HOH B 31 2031 2031 HOH HOH . R 6 HOH B 32 2032 2032 HOH HOH . R 6 HOH B 33 2033 2033 HOH HOH . R 6 HOH B 34 2034 2034 HOH HOH . R 6 HOH B 35 2035 2035 HOH HOH . R 6 HOH B 36 2036 2036 HOH HOH . R 6 HOH B 37 2037 2037 HOH HOH . R 6 HOH B 38 2038 2038 HOH HOH . R 6 HOH B 39 2039 2039 HOH HOH . R 6 HOH B 40 2040 2040 HOH HOH . R 6 HOH B 41 2041 2041 HOH HOH . R 6 HOH B 42 2042 2042 HOH HOH . R 6 HOH B 43 2043 2043 HOH HOH . R 6 HOH B 44 2044 2044 HOH HOH . R 6 HOH B 45 2045 2045 HOH HOH . R 6 HOH B 46 2046 2046 HOH HOH . R 6 HOH B 47 2047 2047 HOH HOH . R 6 HOH B 48 2048 2048 HOH HOH . R 6 HOH B 49 2049 2049 HOH HOH . R 6 HOH B 50 2050 2050 HOH HOH . R 6 HOH B 51 2051 2051 HOH HOH . R 6 HOH B 52 2052 2052 HOH HOH . R 6 HOH B 53 2053 2053 HOH HOH . R 6 HOH B 54 2054 2054 HOH HOH . R 6 HOH B 55 2055 2055 HOH HOH . R 6 HOH B 56 2056 2056 HOH HOH . R 6 HOH B 57 2057 2057 HOH HOH . R 6 HOH B 58 2058 2058 HOH HOH . S 6 HOH E 1 2001 2001 HOH HOH . S 6 HOH E 2 2002 2002 HOH HOH . S 6 HOH E 3 2003 2003 HOH HOH . S 6 HOH E 4 2004 2004 HOH HOH . S 6 HOH E 5 2005 2005 HOH HOH . S 6 HOH E 6 2006 2006 HOH HOH . S 6 HOH E 7 2007 2007 HOH HOH . S 6 HOH E 8 2008 2008 HOH HOH . S 6 HOH E 9 2009 2009 HOH HOH . S 6 HOH E 10 2010 2010 HOH HOH . S 6 HOH E 11 2011 2011 HOH HOH . S 6 HOH E 12 2012 2012 HOH HOH . S 6 HOH E 13 2013 2013 HOH HOH . S 6 HOH E 14 2014 2014 HOH HOH . S 6 HOH E 15 2015 2015 HOH HOH . S 6 HOH E 16 2016 2016 HOH HOH . S 6 HOH E 17 2017 2017 HOH HOH . S 6 HOH E 18 2018 2018 HOH HOH . S 6 HOH E 19 2019 2019 HOH HOH . S 6 HOH E 20 2020 2020 HOH HOH . S 6 HOH E 21 2021 2021 HOH HOH . S 6 HOH E 22 2022 2022 HOH HOH . S 6 HOH E 23 2023 2023 HOH HOH . S 6 HOH E 24 2024 2024 HOH HOH . S 6 HOH E 25 2025 2025 HOH HOH . S 6 HOH E 26 2026 2026 HOH HOH . S 6 HOH E 27 2027 2027 HOH HOH . S 6 HOH E 28 2028 2028 HOH HOH . S 6 HOH E 29 2029 2029 HOH HOH . S 6 HOH E 30 2030 2030 HOH HOH . S 6 HOH E 31 2031 2031 HOH HOH . S 6 HOH E 32 2032 2032 HOH HOH . S 6 HOH E 33 2033 2033 HOH HOH . S 6 HOH E 34 2034 2034 HOH HOH . S 6 HOH E 35 2035 2035 HOH HOH . S 6 HOH E 36 2036 2036 HOH HOH . S 6 HOH E 37 2037 2037 HOH HOH . S 6 HOH E 38 2038 2038 HOH HOH . S 6 HOH E 39 2039 2039 HOH HOH . S 6 HOH E 40 2040 2040 HOH HOH . S 6 HOH E 41 2041 2041 HOH HOH . S 6 HOH E 42 2042 2042 HOH HOH . S 6 HOH E 43 2043 2043 HOH HOH . S 6 HOH E 44 2044 2044 HOH HOH . S 6 HOH E 45 2045 2045 HOH HOH . S 6 HOH E 46 2046 2046 HOH HOH . S 6 HOH E 47 2047 2047 HOH HOH . S 6 HOH E 48 2048 2048 HOH HOH . S 6 HOH E 49 2049 2049 HOH HOH . T 6 HOH F 1 2001 2001 HOH HOH . T 6 HOH F 2 2002 2002 HOH HOH . T 6 HOH F 3 2003 2003 HOH HOH . T 6 HOH F 4 2004 2004 HOH HOH . T 6 HOH F 5 2005 2005 HOH HOH . T 6 HOH F 6 2006 2006 HOH HOH . T 6 HOH F 7 2007 2007 HOH HOH . T 6 HOH F 8 2008 2008 HOH HOH . T 6 HOH F 9 2009 2009 HOH HOH . T 6 HOH F 10 2010 2010 HOH HOH . T 6 HOH F 11 2011 2011 HOH HOH . T 6 HOH F 12 2012 2012 HOH HOH . T 6 HOH F 13 2013 2013 HOH HOH . T 6 HOH F 14 2014 2014 HOH HOH . T 6 HOH F 15 2015 2015 HOH HOH . T 6 HOH F 16 2016 2016 HOH HOH . T 6 HOH F 17 2017 2017 HOH HOH . T 6 HOH F 18 2018 2018 HOH HOH . T 6 HOH F 19 2019 2019 HOH HOH . T 6 HOH F 20 2020 2020 HOH HOH . T 6 HOH F 21 2021 2021 HOH HOH . T 6 HOH F 22 2022 2022 HOH HOH . T 6 HOH F 23 2023 2023 HOH HOH . T 6 HOH F 24 2024 2024 HOH HOH . T 6 HOH F 25 2025 2025 HOH HOH . T 6 HOH F 26 2026 2026 HOH HOH . T 6 HOH F 27 2027 2027 HOH HOH . T 6 HOH F 28 2028 2028 HOH HOH . T 6 HOH F 29 2029 2029 HOH HOH . T 6 HOH F 30 2030 2030 HOH HOH . T 6 HOH F 31 2031 2031 HOH HOH . T 6 HOH F 32 2032 2032 HOH HOH . T 6 HOH F 33 2033 2033 HOH HOH . T 6 HOH F 34 2034 2034 HOH HOH . T 6 HOH F 35 2035 2035 HOH HOH . T 6 HOH F 36 2036 2036 HOH HOH . T 6 HOH F 37 2037 2037 HOH HOH . T 6 HOH F 38 2038 2038 HOH HOH . T 6 HOH F 39 2039 2039 HOH HOH . T 6 HOH F 40 2040 2040 HOH HOH . T 6 HOH F 41 2041 2041 HOH HOH . T 6 HOH F 42 2042 2042 HOH HOH . T 6 HOH F 43 2043 2043 HOH HOH . T 6 HOH F 44 2044 2044 HOH HOH . T 6 HOH F 45 2045 2045 HOH HOH . T 6 HOH F 46 2046 2046 HOH HOH . T 6 HOH F 47 2047 2047 HOH HOH . T 6 HOH F 48 2048 2048 HOH HOH . T 6 HOH F 49 2049 2049 HOH HOH . T 6 HOH F 50 2050 2050 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N GLY . . . L 3 -3.205 -4.229 7.775 1 51.3 ? N GLY 1214 E 1 HETATM 2 C CA GLY . . . L 3 -3.842 -4.636 6.491 1 51.24 ? CA GLY 1214 E 1 HETATM 3 C C GLY . . . L 3 -3.311 -3.842 5.314 1 51.55 ? C GLY 1214 E 1 HETATM 4 O O GLY . . . L 3 -4.069 -3.351 4.471 1 51.5 ? O GLY 1214 E 1 HETATM 5 O OXT GLY . . . L 3 -2.1 -3.668 5.173 1 51.46 ? OXT GLY 1214 E 1 # _model_server_stats.io_time_ms 33 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 339 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #