data_2VQ3 # _model_server_result.job_id 0QDUuzlORHX1Pan3ti2pcg _model_server_result.datetime_utc '2025-09-07 09:45:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2vq3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 2VQ3 # _exptl.entry_id 2VQ3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2VQ3 _cell.length_a 37.686 _cell.length_b 66.812 _cell.length_c 143.366 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2VQ3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 257 n n PA O2A NAP sing 258 n n PA O5B NAP sing 259 n n PA O3 NAP sing 260 n n O2A HOA2 NAP sing 261 n n O5B C5B NAP sing 262 n n C5B C4B NAP sing 263 n n C5B H51A NAP sing 264 n n C5B H52A NAP sing 265 n n C4B O4B NAP sing 266 n n C4B C3B NAP sing 267 n n C4B H4B NAP sing 268 n n O4B C1B NAP sing 269 n n C3B O3B NAP sing 270 n n C3B C2B NAP sing 271 n n C3B H3B NAP sing 272 n n O3B HO3A NAP sing 273 n n C2B O2B NAP sing 274 n n C2B C1B NAP sing 275 n n C2B H2B NAP sing 276 n n O2B P2B NAP sing 277 n n C1B N9A NAP sing 278 n n C1B H1B NAP sing 279 n n N9A C8A NAP sing 280 n y N9A C4A NAP sing 281 n y C8A N7A NAP doub 282 n y C8A H8A NAP sing 283 n n N7A C5A NAP sing 284 n y C5A C6A NAP sing 285 n y C5A C4A NAP doub 286 n y C6A N6A NAP sing 287 n n C6A N1A NAP doub 288 n y N6A H61A NAP sing 289 n n N6A H62A NAP sing 290 n n N1A C2A NAP sing 291 n y C2A N3A NAP doub 292 n y C2A H2A NAP sing 293 n n N3A C4A NAP sing 294 n y O3 PN NAP sing 295 n n PN O1N NAP doub 296 n n PN O2N NAP sing 297 n n PN O5D NAP sing 298 n n O5D C5D NAP sing 299 n n C5D C4D NAP sing 300 n n C5D H51N NAP sing 301 n n C5D H52N NAP sing 302 n n C4D O4D NAP sing 303 n n C4D C3D NAP sing 304 n n C4D H4D NAP sing 305 n n O4D C1D NAP sing 306 n n C3D O3D NAP sing 307 n n C3D C2D NAP sing 308 n n C3D H3D NAP sing 309 n n O3D HO3N NAP sing 310 n n C2D O2D NAP sing 311 n n C2D C1D NAP sing 312 n n C2D H2D NAP sing 313 n n O2D HO2N NAP sing 314 n n C1D N1N NAP sing 315 n n C1D H1D NAP sing 316 n n N1N C2N NAP sing 317 n y N1N C6N NAP doub 318 n y C2N C3N NAP doub 319 n y C2N H2N NAP sing 320 n n C3N C7N NAP sing 321 n n C3N C4N NAP sing 322 n y C7N O7N NAP doub 323 n n C7N N7N NAP sing 324 n n N7N H71N NAP sing 325 n n N7N H72N NAP sing 326 n n C4N C5N NAP doub 327 n y C4N H4N NAP sing 328 n n C5N C6N NAP sing 329 n y C5N H5N NAP sing 330 n n C6N H6N NAP sing 331 n n P2B O1X NAP doub 332 n n P2B O2X NAP sing 333 n n P2B O3X NAP sing 334 n n O2X HOP2 NAP sing 335 n n O3X HOP3 NAP sing 336 n n # _atom_sites.entry_id 2VQ3 _atom_sites.fract_transf_matrix[1][1] 0.026535 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014967 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006975 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAP A 1 301 1210 NAP NAP . D 3 CIT A 1 302 1211 CIT CIT . E 2 NAP B 1 301 1210 NAP NAP . F 4 HOH A 1 401 2060 HOH HOH . F 4 HOH A 2 402 2061 HOH HOH . F 4 HOH A 3 403 2009 HOH HOH . F 4 HOH A 4 404 2042 HOH HOH . F 4 HOH A 5 405 2049 HOH HOH . F 4 HOH A 6 406 2019 HOH HOH . F 4 HOH A 7 407 2048 HOH HOH . F 4 HOH A 8 408 2053 HOH HOH . F 4 HOH A 9 409 2024 HOH HOH . F 4 HOH A 10 410 2058 HOH HOH . F 4 HOH A 11 411 2051 HOH HOH . F 4 HOH A 12 412 2045 HOH HOH . F 4 HOH A 13 413 2054 HOH HOH . F 4 HOH A 14 414 2032 HOH HOH . F 4 HOH A 15 415 2020 HOH HOH . F 4 HOH A 16 416 2013 HOH HOH . F 4 HOH A 17 417 2017 HOH HOH . F 4 HOH A 18 418 2056 HOH HOH . F 4 HOH A 19 419 2005 HOH HOH . F 4 HOH A 20 420 2043 HOH HOH . F 4 HOH A 21 421 2004 HOH HOH . F 4 HOH A 22 422 2039 HOH HOH . F 4 HOH A 23 423 2007 HOH HOH . F 4 HOH A 24 424 2027 HOH HOH . F 4 HOH A 25 425 2028 HOH HOH . F 4 HOH A 26 426 2022 HOH HOH . F 4 HOH A 27 427 2001 HOH HOH . F 4 HOH A 28 428 2035 HOH HOH . F 4 HOH A 29 429 2037 HOH HOH . F 4 HOH A 30 430 2033 HOH HOH . F 4 HOH A 31 431 2002 HOH HOH . F 4 HOH A 32 432 2003 HOH HOH . F 4 HOH A 33 433 2040 HOH HOH . F 4 HOH A 34 434 2047 HOH HOH . F 4 HOH A 35 435 2055 HOH HOH . F 4 HOH A 36 436 2057 HOH HOH . F 4 HOH A 37 437 2011 HOH HOH . F 4 HOH A 38 438 2034 HOH HOH . F 4 HOH A 39 439 2046 HOH HOH . F 4 HOH A 40 440 2016 HOH HOH . F 4 HOH A 41 441 2008 HOH HOH . F 4 HOH A 42 442 2031 HOH HOH . F 4 HOH A 43 443 2030 HOH HOH . F 4 HOH A 44 444 2059 HOH HOH . F 4 HOH A 45 445 2038 HOH HOH . F 4 HOH A 46 446 2044 HOH HOH . F 4 HOH A 47 447 2026 HOH HOH . F 4 HOH A 48 448 2050 HOH HOH . F 4 HOH A 49 449 2010 HOH HOH . F 4 HOH A 50 450 2052 HOH HOH . F 4 HOH A 51 451 2023 HOH HOH . F 4 HOH A 52 452 2015 HOH HOH . F 4 HOH A 53 453 2025 HOH HOH . F 4 HOH A 54 454 2012 HOH HOH . F 4 HOH A 55 455 2001 HOH HOH . F 4 HOH A 56 456 2018 HOH HOH . F 4 HOH A 57 457 2036 HOH HOH . F 4 HOH A 58 458 2041 HOH HOH . F 4 HOH A 59 459 2014 HOH HOH . F 4 HOH A 60 460 2029 HOH HOH . F 4 HOH A 61 461 2021 HOH HOH . F 4 HOH A 62 462 2006 HOH HOH . G 4 HOH B 1 401 2058 HOH HOH . G 4 HOH B 2 402 2014 HOH HOH . G 4 HOH B 3 403 2061 HOH HOH . G 4 HOH B 4 404 2016 HOH HOH . G 4 HOH B 5 405 2049 HOH HOH . G 4 HOH B 6 406 2018 HOH HOH . G 4 HOH B 7 407 2048 HOH HOH . G 4 HOH B 8 408 2047 HOH HOH . G 4 HOH B 9 409 2009 HOH HOH . G 4 HOH B 10 410 2038 HOH HOH . G 4 HOH B 11 411 2022 HOH HOH . G 4 HOH B 12 412 2006 HOH HOH . G 4 HOH B 13 413 2033 HOH HOH . G 4 HOH B 14 414 2003 HOH HOH . G 4 HOH B 15 415 2024 HOH HOH . G 4 HOH B 16 416 2002 HOH HOH . G 4 HOH B 17 417 2050 HOH HOH . G 4 HOH B 18 418 2042 HOH HOH . G 4 HOH B 19 419 2036 HOH HOH . G 4 HOH B 20 420 2055 HOH HOH . G 4 HOH B 21 421 2027 HOH HOH . G 4 HOH B 22 422 2023 HOH HOH . G 4 HOH B 23 423 2040 HOH HOH . G 4 HOH B 24 424 2046 HOH HOH . G 4 HOH B 25 425 2025 HOH HOH . G 4 HOH B 26 426 2021 HOH HOH . G 4 HOH B 27 427 2035 HOH HOH . G 4 HOH B 28 428 2031 HOH HOH . G 4 HOH B 29 429 2060 HOH HOH . G 4 HOH B 30 430 2039 HOH HOH . G 4 HOH B 31 431 2054 HOH HOH . G 4 HOH B 32 432 2056 HOH HOH . G 4 HOH B 33 433 2045 HOH HOH . G 4 HOH B 34 434 2010 HOH HOH . G 4 HOH B 35 435 2032 HOH HOH . G 4 HOH B 36 436 2007 HOH HOH . G 4 HOH B 37 437 2052 HOH HOH . G 4 HOH B 38 438 2017 HOH HOH . G 4 HOH B 39 439 2026 HOH HOH . G 4 HOH B 40 440 2001 HOH HOH . G 4 HOH B 41 441 2051 HOH HOH . G 4 HOH B 42 442 2034 HOH HOH . G 4 HOH B 43 443 2063 HOH HOH . G 4 HOH B 44 444 2020 HOH HOH . G 4 HOH B 45 445 2041 HOH HOH . G 4 HOH B 46 446 2012 HOH HOH . G 4 HOH B 47 447 2053 HOH HOH . G 4 HOH B 48 448 2004 HOH HOH . G 4 HOH B 49 449 2011 HOH HOH . G 4 HOH B 50 450 2028 HOH HOH . G 4 HOH B 51 451 2062 HOH HOH . G 4 HOH B 52 452 2013 HOH HOH . G 4 HOH B 53 453 2008 HOH HOH . G 4 HOH B 54 454 2044 HOH HOH . G 4 HOH B 55 455 2029 HOH HOH . G 4 HOH B 56 456 2030 HOH HOH . G 4 HOH B 57 457 2005 HOH HOH . G 4 HOH B 58 458 2043 HOH HOH . G 4 HOH B 59 459 2059 HOH HOH . G 4 HOH B 60 460 2057 HOH HOH . G 4 HOH B 61 461 2037 HOH HOH . G 4 HOH B 62 462 2019 HOH HOH . G 4 HOH B 63 463 2015 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . C 2 40.655 -21.448 52.238 1 54.65 ? PA NAP 301 A 1 HETATM 2 O O1A NAP . . . C 2 42.009 -20.998 51.846 1 54.95 ? O1A NAP 301 A 1 HETATM 3 O O2A NAP . . . C 2 39.684 -20.317 52.347 1 54.87 ? O2A NAP 301 A 1 HETATM 4 O O5B NAP . . . C 2 40.781 -22.325 53.574 1 56 ? O5B NAP 301 A 1 HETATM 5 C C5B NAP . . . C 2 41.817 -23.262 53.778 1 56.73 ? C5B NAP 301 A 1 HETATM 6 C C4B NAP . . . C 2 41.887 -23.52 55.281 1 58.02 ? C4B NAP 301 A 1 HETATM 7 O O4B NAP . . . C 2 42.871 -24.483 55.587 1 59.09 ? O4B NAP 301 A 1 HETATM 8 C C3B NAP . . . C 2 42.293 -22.3 56.105 1 58.52 ? C3B NAP 301 A 1 HETATM 9 O O3B NAP . . . C 2 41.197 -21.483 56.433 1 58.63 ? O3B NAP 301 A 1 HETATM 10 C C2B NAP . . . C 2 42.982 -22.894 57.322 1 59.1 ? C2B NAP 301 A 1 HETATM 11 O O2B NAP . . . C 2 42.26 -22.827 58.531 1 61.65 ? O2B NAP 301 A 1 HETATM 12 C C1B NAP . . . C 2 43.141 -24.365 56.97 1 59.37 ? C1B NAP 301 A 1 HETATM 13 N N9A NAP . . . C 2 44.489 -24.813 57.343 1 59.63 ? N9A NAP 301 A 1 HETATM 14 C C8A NAP . . . C 2 44.793 -25.812 58.235 1 59.36 ? C8A NAP 301 A 1 HETATM 15 N N7A NAP . . . C 2 46.138 -25.903 58.321 1 59.47 ? N7A NAP 301 A 1 HETATM 16 C C5A NAP . . . C 2 46.68 -24.968 57.504 1 59.45 ? C5A NAP 301 A 1 HETATM 17 C C6A NAP . . . C 2 47.99 -24.634 57.215 1 59.27 ? C6A NAP 301 A 1 HETATM 18 N N6A NAP . . . C 2 48.968 -25.306 57.802 1 59.23 ? N6A NAP 301 A 1 HETATM 19 N N1A NAP . . . C 2 48.255 -23.614 56.321 1 59.81 ? N1A NAP 301 A 1 HETATM 20 C C2A NAP . . . C 2 47.213 -22.921 55.72 1 59.32 ? C2A NAP 301 A 1 HETATM 21 N N3A NAP . . . C 2 45.906 -23.263 56.004 1 59.02 ? N3A NAP 301 A 1 HETATM 22 C C4A NAP . . . C 2 45.654 -24.27 56.881 1 59.3 ? C4A NAP 301 A 1 HETATM 23 O O3 NAP . . . C 2 40.041 -22.518 51.192 1 52.19 ? O3 NAP 301 A 1 HETATM 24 P PN NAP . . . C 2 38.523 -23.049 51.008 1 48.28 ? PN NAP 301 A 1 HETATM 25 O O1N NAP . . . C 2 37.826 -23.024 52.306 1 45.69 ? O1N NAP 301 A 1 HETATM 26 O O2N NAP . . . C 2 37.904 -22.356 49.865 1 48.76 ? O2N NAP 301 A 1 HETATM 27 O O5D NAP . . . C 2 38.838 -24.555 50.505 1 45.52 ? O5D NAP 301 A 1 HETATM 28 C C5D NAP . . . C 2 39.42 -25.547 51.33 1 43.24 ? C5D NAP 301 A 1 HETATM 29 C C4D NAP . . . C 2 39.129 -26.905 50.692 1 42.22 ? C4D NAP 301 A 1 HETATM 30 O O4D NAP . . . C 2 37.764 -26.973 50.277 1 40.91 ? O4D NAP 301 A 1 HETATM 31 C C3D NAP . . . C 2 39.991 -27.122 49.437 1 40.49 ? C3D NAP 301 A 1 HETATM 32 O O3D NAP . . . C 2 40.534 -28.429 49.355 1 40.94 ? O3D NAP 301 A 1 HETATM 33 C C2D NAP . . . C 2 39.018 -26.88 48.306 1 38.91 ? C2D NAP 301 A 1 HETATM 34 O O2D NAP . . . C 2 39.394 -27.532 47.111 1 30.98 ? O2D NAP 301 A 1 HETATM 35 C C1D NAP . . . C 2 37.696 -27.35 48.918 1 38.47 ? C1D NAP 301 A 1 HETATM 36 N N1N NAP . . . C 2 36.518 -26.861 48.148 1 39.64 ? N1N NAP 301 A 1 HETATM 37 C C2N NAP . . . C 2 36.294 -25.5 47.938 1 39.68 ? C2N NAP 301 A 1 HETATM 38 C C3N NAP . . . C 2 35.188 -25.046 47.175 1 39.21 ? C3N NAP 301 A 1 HETATM 39 C C7N NAP . . . C 2 34.702 -23.605 47.287 1 38.71 ? C7N NAP 301 A 1 HETATM 40 O O7N NAP . . . C 2 33.634 -23.138 46.47 1 35.27 ? O7N NAP 301 A 1 HETATM 41 N N7N NAP . . . C 2 35.287 -22.758 48.157 1 37.97 ? N7N NAP 301 A 1 HETATM 42 C C4N NAP . . . C 2 34.328 -26.012 46.62 1 39.69 ? C4N NAP 301 A 1 HETATM 43 C C5N NAP . . . C 2 34.552 -27.382 46.826 1 39.18 ? C5N NAP 301 A 1 HETATM 44 C C6N NAP . . . C 2 35.666 -27.801 47.601 1 38.35 ? C6N NAP 301 A 1 HETATM 45 P P2B NAP . . . C 2 42.996 -22.596 59.962 1 62.23 ? P2B NAP 301 A 1 HETATM 46 O O1X NAP . . . C 2 43.778 -23.836 60.314 1 63.2 ? O1X NAP 301 A 1 HETATM 47 O O2X NAP . . . C 2 43.879 -21.361 59.866 1 62.23 ? O2X NAP 301 A 1 HETATM 48 O O3X NAP . . . C 2 41.976 -22.384 61.052 1 62.73 ? O3X NAP 301 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 374 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 48 #