data_2VQ3
#
_model_server_result.job_id            Ngit-ZSOPuPFucUNetJv0A 
_model_server_result.datetime_utc      '2025-09-04 22:20:44' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2vq3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":302}' 
#
_entry.id    2VQ3 
#
_exptl.entry_id    2VQ3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              192.124 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CITRIC ACID' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2VQ3 
_cell.length_a            37.686 
_cell.length_b            66.812 
_cell.length_c            143.366 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2VQ3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
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_pdbx_struct_assembly.method_details        PQS 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C6 H8 O7' 
_chem_comp.formula_weight    192.124 
_chem_comp.id                CIT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CITRIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 CIT doub 70 n n 
C1 O2 CIT sing 71 n n 
C1 C2 CIT sing 72 n n 
O2 HO2 CIT sing 73 n n 
C2 C3 CIT sing 74 n n 
C2 H21 CIT sing 75 n n 
C2 H22 CIT sing 76 n n 
C3 O7 CIT sing 77 n n 
C3 C4 CIT sing 78 n n 
C3 C6 CIT sing 79 n n 
O7 HO7 CIT sing 80 n n 
C4 C5 CIT sing 81 n n 
C4 H41 CIT sing 82 n n 
C4 H42 CIT sing 83 n n 
C5 O3 CIT doub 84 n n 
C5 O4 CIT sing 85 n n 
O4 HO4 CIT sing 86 n n 
C6 O5 CIT doub 87 n n 
C6 O6 CIT sing 88 n n 
O6 HO6 CIT sing 89 n n 
#
_atom_sites.entry_id                     2VQ3 
_atom_sites.fract_transf_matrix[1][1]    0.026535 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014967 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006975 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NAP A 1 301 1210 NAP NAP . 
D 3 CIT A 1 302 1211 CIT CIT . 
E 2 NAP B 1 301 1210 NAP NAP . 
F 4 HOH A 1 401 2060 HOH HOH . 
F 4 HOH A 2 402 2061 HOH HOH . 
F 4 HOH A 3 403 2009 HOH HOH . 
F 4 HOH A 4 404 2042 HOH HOH . 
F 4 HOH A 5 405 2049 HOH HOH . 
F 4 HOH A 6 406 2019 HOH HOH . 
F 4 HOH A 7 407 2048 HOH HOH . 
F 4 HOH A 8 408 2053 HOH HOH . 
F 4 HOH A 9 409 2024 HOH HOH . 
F 4 HOH A 10 410 2058 HOH HOH . 
F 4 HOH A 11 411 2051 HOH HOH . 
F 4 HOH A 12 412 2045 HOH HOH . 
F 4 HOH A 13 413 2054 HOH HOH . 
F 4 HOH A 14 414 2032 HOH HOH . 
F 4 HOH A 15 415 2020 HOH HOH . 
F 4 HOH A 16 416 2013 HOH HOH . 
F 4 HOH A 17 417 2017 HOH HOH . 
F 4 HOH A 18 418 2056 HOH HOH . 
F 4 HOH A 19 419 2005 HOH HOH . 
F 4 HOH A 20 420 2043 HOH HOH . 
F 4 HOH A 21 421 2004 HOH HOH . 
F 4 HOH A 22 422 2039 HOH HOH . 
F 4 HOH A 23 423 2007 HOH HOH . 
F 4 HOH A 24 424 2027 HOH HOH . 
F 4 HOH A 25 425 2028 HOH HOH . 
F 4 HOH A 26 426 2022 HOH HOH . 
F 4 HOH A 27 427 2001 HOH HOH . 
F 4 HOH A 28 428 2035 HOH HOH . 
F 4 HOH A 29 429 2037 HOH HOH . 
F 4 HOH A 30 430 2033 HOH HOH . 
F 4 HOH A 31 431 2002 HOH HOH . 
F 4 HOH A 32 432 2003 HOH HOH . 
F 4 HOH A 33 433 2040 HOH HOH . 
F 4 HOH A 34 434 2047 HOH HOH . 
F 4 HOH A 35 435 2055 HOH HOH . 
F 4 HOH A 36 436 2057 HOH HOH . 
F 4 HOH A 37 437 2011 HOH HOH . 
F 4 HOH A 38 438 2034 HOH HOH . 
F 4 HOH A 39 439 2046 HOH HOH . 
F 4 HOH A 40 440 2016 HOH HOH . 
F 4 HOH A 41 441 2008 HOH HOH . 
F 4 HOH A 42 442 2031 HOH HOH . 
F 4 HOH A 43 443 2030 HOH HOH . 
F 4 HOH A 44 444 2059 HOH HOH . 
F 4 HOH A 45 445 2038 HOH HOH . 
F 4 HOH A 46 446 2044 HOH HOH . 
F 4 HOH A 47 447 2026 HOH HOH . 
F 4 HOH A 48 448 2050 HOH HOH . 
F 4 HOH A 49 449 2010 HOH HOH . 
F 4 HOH A 50 450 2052 HOH HOH . 
F 4 HOH A 51 451 2023 HOH HOH . 
F 4 HOH A 52 452 2015 HOH HOH . 
F 4 HOH A 53 453 2025 HOH HOH . 
F 4 HOH A 54 454 2012 HOH HOH . 
F 4 HOH A 55 455 2001 HOH HOH . 
F 4 HOH A 56 456 2018 HOH HOH . 
F 4 HOH A 57 457 2036 HOH HOH . 
F 4 HOH A 58 458 2041 HOH HOH . 
F 4 HOH A 59 459 2014 HOH HOH . 
F 4 HOH A 60 460 2029 HOH HOH . 
F 4 HOH A 61 461 2021 HOH HOH . 
F 4 HOH A 62 462 2006 HOH HOH . 
G 4 HOH B 1 401 2058 HOH HOH . 
G 4 HOH B 2 402 2014 HOH HOH . 
G 4 HOH B 3 403 2061 HOH HOH . 
G 4 HOH B 4 404 2016 HOH HOH . 
G 4 HOH B 5 405 2049 HOH HOH . 
G 4 HOH B 6 406 2018 HOH HOH . 
G 4 HOH B 7 407 2048 HOH HOH . 
G 4 HOH B 8 408 2047 HOH HOH . 
G 4 HOH B 9 409 2009 HOH HOH . 
G 4 HOH B 10 410 2038 HOH HOH . 
G 4 HOH B 11 411 2022 HOH HOH . 
G 4 HOH B 12 412 2006 HOH HOH . 
G 4 HOH B 13 413 2033 HOH HOH . 
G 4 HOH B 14 414 2003 HOH HOH . 
G 4 HOH B 15 415 2024 HOH HOH . 
G 4 HOH B 16 416 2002 HOH HOH . 
G 4 HOH B 17 417 2050 HOH HOH . 
G 4 HOH B 18 418 2042 HOH HOH . 
G 4 HOH B 19 419 2036 HOH HOH . 
G 4 HOH B 20 420 2055 HOH HOH . 
G 4 HOH B 21 421 2027 HOH HOH . 
G 4 HOH B 22 422 2023 HOH HOH . 
G 4 HOH B 23 423 2040 HOH HOH . 
G 4 HOH B 24 424 2046 HOH HOH . 
G 4 HOH B 25 425 2025 HOH HOH . 
G 4 HOH B 26 426 2021 HOH HOH . 
G 4 HOH B 27 427 2035 HOH HOH . 
G 4 HOH B 28 428 2031 HOH HOH . 
G 4 HOH B 29 429 2060 HOH HOH . 
G 4 HOH B 30 430 2039 HOH HOH . 
G 4 HOH B 31 431 2054 HOH HOH . 
G 4 HOH B 32 432 2056 HOH HOH . 
G 4 HOH B 33 433 2045 HOH HOH . 
G 4 HOH B 34 434 2010 HOH HOH . 
G 4 HOH B 35 435 2032 HOH HOH . 
G 4 HOH B 36 436 2007 HOH HOH . 
G 4 HOH B 37 437 2052 HOH HOH . 
G 4 HOH B 38 438 2017 HOH HOH . 
G 4 HOH B 39 439 2026 HOH HOH . 
G 4 HOH B 40 440 2001 HOH HOH . 
G 4 HOH B 41 441 2051 HOH HOH . 
G 4 HOH B 42 442 2034 HOH HOH . 
G 4 HOH B 43 443 2063 HOH HOH . 
G 4 HOH B 44 444 2020 HOH HOH . 
G 4 HOH B 45 445 2041 HOH HOH . 
G 4 HOH B 46 446 2012 HOH HOH . 
G 4 HOH B 47 447 2053 HOH HOH . 
G 4 HOH B 48 448 2004 HOH HOH . 
G 4 HOH B 49 449 2011 HOH HOH . 
G 4 HOH B 50 450 2028 HOH HOH . 
G 4 HOH B 51 451 2062 HOH HOH . 
G 4 HOH B 52 452 2013 HOH HOH . 
G 4 HOH B 53 453 2008 HOH HOH . 
G 4 HOH B 54 454 2044 HOH HOH . 
G 4 HOH B 55 455 2029 HOH HOH . 
G 4 HOH B 56 456 2030 HOH HOH . 
G 4 HOH B 57 457 2005 HOH HOH . 
G 4 HOH B 58 458 2043 HOH HOH . 
G 4 HOH B 59 459 2059 HOH HOH . 
G 4 HOH B 60 460 2057 HOH HOH . 
G 4 HOH B 61 461 2037 HOH HOH . 
G 4 HOH B 62 462 2019 HOH HOH . 
G 4 HOH B 63 463 2015 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 CIT . . . D 3 38.139 -7.284 70.106 1 98.05 ? C1 CIT 302 A 1 
HETATM 2 O O1 CIT . . . D 3 37.328 -6.772 69.301 1 98.14 ? O1 CIT 302 A 1 
HETATM 3 O O2 CIT . . . D 3 38.993 -8.086 69.665 1 98.04 ? O2 CIT 302 A 1 
HETATM 4 C C2 CIT . . . D 3 38.075 -6.942 71.581 1 97.68 ? C2 CIT 302 A 1 
HETATM 5 C C3 CIT . . . D 3 37.848 -8.193 72.436 1 97.34 ? C3 CIT 302 A 1 
HETATM 6 O O7 CIT . . . D 3 39.106 -8.916 72.468 1 97.14 ? O7 CIT 302 A 1 
HETATM 7 C C4 CIT . . . D 3 36.791 -9.165 71.884 1 97.05 ? C4 CIT 302 A 1 
HETATM 8 C C5 CIT . . . D 3 35.402 -8.589 71.666 1 96.77 ? C5 CIT 302 A 1 
HETATM 9 O O3 CIT . . . D 3 34.399 -9.259 72 1 96.41 ? O3 CIT 302 A 1 
HETATM 10 O O4 CIT . . . D 3 35.208 -7.469 71.144 1 96.38 ? O4 CIT 302 A 1 
HETATM 11 C C6 CIT . . . D 3 37.517 -7.786 73.872 1 97.37 ? C6 CIT 302 A 1 
HETATM 12 O O5 CIT . . . D 3 36.606 -6.97 74.129 1 97.45 ? O5 CIT 302 A 1 
HETATM 13 O O6 CIT . . . D 3 38.164 -8.267 74.828 1 97.11 ? O6 CIT 302 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           315 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           13 
#