data_2VQ7 # _model_server_result.job_id NHEP-eJx0qqB7f0mgKEszg _model_server_result.datetime_utc '2024-11-24 18:25:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2vq7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"T","auth_seq_id":1452}' # _entry.id 2VQ7 # _exptl.entry_id 2VQ7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2VQ7 _cell.length_a 219.589 _cell.length_b 219.589 _cell.length_c 133.61 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2VQ7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 61' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS dimeric 2 author_and_software_defined_assembly 1 PQS dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,G,H,I,J,S,T,U,V,W,Z 1 1 B,C,K,L,M,N,O,P,Q,R,X,Y 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 L N N ? 3 P N N ? 3 T N N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 361 n n PA O2A NAP sing 362 n n PA O5B NAP sing 363 n n PA O3 NAP sing 364 n n O2A HOA2 NAP sing 365 n n O5B C5B NAP sing 366 n n C5B C4B NAP sing 367 n n C5B H51A NAP sing 368 n n C5B H52A NAP sing 369 n n C4B O4B NAP sing 370 n n C4B C3B NAP sing 371 n n C4B H4B NAP sing 372 n n O4B C1B NAP sing 373 n n C3B O3B NAP sing 374 n n C3B C2B NAP sing 375 n n C3B H3B NAP sing 376 n n O3B HO3A NAP sing 377 n n C2B O2B NAP sing 378 n n C2B C1B NAP sing 379 n n C2B H2B NAP sing 380 n n O2B P2B NAP sing 381 n n C1B N9A NAP sing 382 n n C1B H1B NAP sing 383 n n N9A C8A NAP sing 384 n y N9A C4A NAP sing 385 n y C8A N7A NAP doub 386 n y C8A H8A NAP sing 387 n n N7A C5A NAP sing 388 n y C5A C6A NAP sing 389 n y C5A C4A NAP doub 390 n y C6A N6A NAP sing 391 n n C6A N1A NAP doub 392 n y N6A H61A NAP sing 393 n n N6A H62A NAP sing 394 n n N1A C2A NAP sing 395 n y C2A N3A NAP doub 396 n y C2A H2A NAP sing 397 n n N3A C4A NAP sing 398 n y O3 PN NAP sing 399 n n PN O1N NAP doub 400 n n PN O2N NAP sing 401 n n PN O5D NAP sing 402 n n O5D C5D NAP sing 403 n n C5D C4D NAP sing 404 n n C5D H51N NAP sing 405 n n C5D H52N NAP sing 406 n n C4D O4D NAP sing 407 n n C4D C3D NAP sing 408 n n C4D H4D NAP sing 409 n n O4D C1D NAP sing 410 n n C3D O3D NAP sing 411 n n C3D C2D NAP sing 412 n n C3D H3D NAP sing 413 n n O3D HO3N NAP sing 414 n n C2D O2D NAP sing 415 n n C2D C1D NAP sing 416 n n C2D H2D NAP sing 417 n n O2D HO2N NAP sing 418 n n C1D N1N NAP sing 419 n n C1D H1D NAP sing 420 n n N1N C2N NAP sing 421 n y N1N C6N NAP doub 422 n y C2N C3N NAP doub 423 n y C2N H2N NAP sing 424 n n C3N C7N NAP sing 425 n n C3N C4N NAP sing 426 n y C7N O7N NAP doub 427 n n C7N N7N NAP sing 428 n n N7N H71N NAP sing 429 n n N7N H72N NAP sing 430 n n C4N C5N NAP doub 431 n y C4N H4N NAP sing 432 n n C5N C6N NAP sing 433 n y C5N H5N NAP sing 434 n n C6N H6N NAP sing 435 n n P2B O1X NAP doub 436 n n P2B O2X NAP sing 437 n n P2B O3X NAP sing 438 n n O2X HOP2 NAP sing 439 n n O3X HOP3 NAP sing 440 n n # _atom_sites.entry_id 2VQ7 _atom_sites.fract_transf_matrix[1][1] 0.004554 _atom_sites.fract_transf_matrix[1][2] 0.002629 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005258 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007484 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 FAD A 1 1451 1451 FAD FAD . F 3 NAP A 1 1452 1452 NAP NAP . G 4 CL A 1 1453 1453 CL CL . H 5 EPE A 1 1454 1454 EPE EPE . I 5 EPE A 1 1455 1455 EPE EPE . J 6 PGE A 1 1456 1456 PGE PGE . K 2 FAD B 1 1451 1451 FAD FAD . L 3 NAP B 1 1452 1452 NAP NAP . M 7 PG4 B 1 1453 1453 PG4 PG4 . N 4 CL B 1 1454 1454 CL CL . O 2 FAD C 1 1453 1453 FAD FAD . P 3 NAP C 1 1454 1454 NAP NAP . Q 4 CL C 1 1455 1455 CL CL . R 5 EPE C 1 1456 1456 EPE EPE . S 2 FAD D 1 1451 1451 FAD FAD . T 3 NAP D 1 1452 1452 NAP NAP . U 4 CL D 1 1453 1453 CL CL . V 5 EPE D 1 1454 1454 EPE EPE . W 8 HOH A 1 2001 2001 HOH HOH . W 8 HOH A 2 2002 2002 HOH HOH . W 8 HOH A 3 2003 2003 HOH HOH . W 8 HOH A 4 2004 2004 HOH HOH . W 8 HOH A 5 2005 2005 HOH HOH . W 8 HOH A 6 2006 2006 HOH HOH . W 8 HOH A 7 2007 2007 HOH HOH . W 8 HOH A 8 2008 2008 HOH HOH . W 8 HOH A 9 2009 2009 HOH HOH . W 8 HOH A 10 2010 2010 HOH HOH . W 8 HOH A 11 2011 2011 HOH HOH . W 8 HOH A 12 2012 2012 HOH HOH . W 8 HOH A 13 2013 2013 HOH HOH . W 8 HOH A 14 2014 2014 HOH HOH . W 8 HOH A 15 2015 2015 HOH HOH . W 8 HOH A 16 2016 2016 HOH HOH . W 8 HOH A 17 2017 2017 HOH HOH . W 8 HOH A 18 2018 2018 HOH HOH . W 8 HOH A 19 2019 2019 HOH HOH . W 8 HOH A 20 2020 2020 HOH HOH . W 8 HOH A 21 2021 2021 HOH HOH . W 8 HOH A 22 2022 2022 HOH HOH . W 8 HOH A 23 2023 2023 HOH HOH . W 8 HOH A 24 2024 2024 HOH HOH . W 8 HOH A 25 2025 2025 HOH HOH . W 8 HOH A 26 2026 2026 HOH HOH . W 8 HOH A 27 2027 2027 HOH HOH . W 8 HOH A 28 2028 2028 HOH HOH . W 8 HOH A 29 2029 2029 HOH HOH . W 8 HOH A 30 2030 2030 HOH HOH . W 8 HOH A 31 2031 2031 HOH HOH . W 8 HOH A 32 2032 2032 HOH HOH . W 8 HOH A 33 2033 2033 HOH HOH . W 8 HOH A 34 2034 2034 HOH HOH . W 8 HOH A 35 2035 2035 HOH HOH . W 8 HOH A 36 2036 2036 HOH HOH . W 8 HOH A 37 2037 2037 HOH HOH . W 8 HOH A 38 2038 2038 HOH HOH . W 8 HOH A 39 2039 2039 HOH HOH . W 8 HOH A 40 2040 2040 HOH HOH . W 8 HOH A 41 2041 2041 HOH HOH . X 8 HOH B 1 2001 2001 HOH HOH . X 8 HOH B 2 2002 2002 HOH HOH . X 8 HOH B 3 2003 2003 HOH HOH . X 8 HOH B 4 2004 2004 HOH HOH . X 8 HOH B 5 2005 2005 HOH HOH . X 8 HOH B 6 2006 2006 HOH HOH . X 8 HOH B 7 2007 2007 HOH HOH . X 8 HOH B 8 2008 2008 HOH HOH . X 8 HOH B 9 2009 2009 HOH HOH . X 8 HOH B 10 2010 2010 HOH HOH . X 8 HOH B 11 2011 2011 HOH HOH . X 8 HOH B 12 2012 2012 HOH HOH . X 8 HOH B 13 2013 2013 HOH HOH . X 8 HOH B 14 2014 2014 HOH HOH . X 8 HOH B 15 2015 2015 HOH HOH . X 8 HOH B 16 2016 2016 HOH HOH . X 8 HOH B 17 2017 2017 HOH HOH . X 8 HOH B 18 2018 2018 HOH HOH . X 8 HOH B 19 2019 2019 HOH HOH . X 8 HOH B 20 2020 2020 HOH HOH . X 8 HOH B 21 2021 2021 HOH HOH . X 8 HOH B 22 2022 2022 HOH HOH . X 8 HOH B 23 2023 2023 HOH HOH . X 8 HOH B 24 2024 2024 HOH HOH . X 8 HOH B 25 2025 2025 HOH HOH . X 8 HOH B 26 2026 2026 HOH HOH . X 8 HOH B 27 2027 2027 HOH HOH . X 8 HOH B 28 2028 2028 HOH HOH . X 8 HOH B 29 2029 2029 HOH HOH . X 8 HOH B 30 2030 2030 HOH HOH . X 8 HOH B 31 2031 2031 HOH HOH . X 8 HOH B 32 2032 2032 HOH HOH . X 8 HOH B 33 2033 2033 HOH HOH . Y 8 HOH C 1 2001 2001 HOH HOH . Y 8 HOH C 2 2002 2002 HOH HOH . Y 8 HOH C 3 2003 2003 HOH HOH . Y 8 HOH C 4 2004 2004 HOH HOH . Y 8 HOH C 5 2005 2005 HOH HOH . Y 8 HOH C 6 2006 2006 HOH HOH . Y 8 HOH C 7 2007 2007 HOH HOH . Y 8 HOH C 8 2008 2008 HOH HOH . Y 8 HOH C 9 2009 2009 HOH HOH . Y 8 HOH C 10 2010 2010 HOH HOH . Y 8 HOH C 11 2011 2011 HOH HOH . Y 8 HOH C 12 2012 2012 HOH HOH . Y 8 HOH C 13 2013 2013 HOH HOH . Y 8 HOH C 14 2014 2014 HOH HOH . Y 8 HOH C 15 2015 2015 HOH HOH . Y 8 HOH C 16 2016 2016 HOH HOH . Y 8 HOH C 17 2017 2017 HOH HOH . Y 8 HOH C 18 2018 2018 HOH HOH . Y 8 HOH C 19 2019 2019 HOH HOH . Y 8 HOH C 20 2020 2020 HOH HOH . Y 8 HOH C 21 2021 2021 HOH HOH . Y 8 HOH C 22 2022 2022 HOH HOH . Y 8 HOH C 23 2023 2023 HOH HOH . Y 8 HOH C 24 2024 2024 HOH HOH . Y 8 HOH C 25 2025 2025 HOH HOH . Y 8 HOH C 26 2026 2026 HOH HOH . Z 8 HOH D 1 2001 2001 HOH HOH . Z 8 HOH D 2 2002 2002 HOH HOH . Z 8 HOH D 3 2003 2003 HOH HOH . Z 8 HOH D 4 2004 2004 HOH HOH . Z 8 HOH D 5 2005 2005 HOH HOH . Z 8 HOH D 6 2006 2006 HOH HOH . Z 8 HOH D 7 2007 2007 HOH HOH . Z 8 HOH D 8 2008 2008 HOH HOH . Z 8 HOH D 9 2009 2009 HOH HOH . Z 8 HOH D 10 2010 2010 HOH HOH . Z 8 HOH D 11 2011 2011 HOH HOH . Z 8 HOH D 12 2012 2012 HOH HOH . Z 8 HOH D 13 2013 2013 HOH HOH . Z 8 HOH D 14 2014 2014 HOH HOH . Z 8 HOH D 15 2015 2015 HOH HOH . Z 8 HOH D 16 2016 2016 HOH HOH . Z 8 HOH D 17 2017 2017 HOH HOH . Z 8 HOH D 18 2018 2018 HOH HOH . Z 8 HOH D 19 2019 2019 HOH HOH . Z 8 HOH D 20 2020 2020 HOH HOH . Z 8 HOH D 21 2021 2021 HOH HOH . Z 8 HOH D 22 2022 2022 HOH HOH . Z 8 HOH D 23 2023 2023 HOH HOH . Z 8 HOH D 24 2024 2024 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . T 3 -16.143 181.01 13.627 1 45.5 ? PA NAP 1452 D 1 HETATM 2 O O1A NAP . . . T 3 -16.055 179.884 14.606 1 42.74 ? O1A NAP 1452 D 1 HETATM 3 O O2A NAP . . . T 3 -17.457 181.934 13.805 1 41.07 ? O2A NAP 1452 D 1 HETATM 4 O O5B NAP . . . T 3 -14.855 181.975 13.772 1 42.31 ? O5B NAP 1452 D 1 HETATM 5 C C5B NAP . . . T 3 -15.201 183.365 13.642 1 37.94 ? C5B NAP 1452 D 1 HETATM 6 C C4B NAP . . . T 3 -13.845 184.072 13.718 1 37.6 ? C4B NAP 1452 D 1 HETATM 7 O O4B NAP . . . T 3 -13.768 185.073 12.692 1 38.23 ? O4B NAP 1452 D 1 HETATM 8 C C3B NAP . . . T 3 -13.635 184.764 15.099 1 37.95 ? C3B NAP 1452 D 1 HETATM 9 O O3B NAP . . . T 3 -12.293 184.512 15.538 1 40.87 ? O3B NAP 1452 D 1 HETATM 10 C C2B NAP . . . T 3 -13.801 186.265 14.746 1 37.43 ? C2B NAP 1452 D 1 HETATM 11 O O2B NAP . . . T 3 -13.051 187.22 15.53 1 42.19 ? O2B NAP 1452 D 1 HETATM 12 C C1B NAP . . . T 3 -13.132 186.208 13.336 1 36.08 ? C1B NAP 1452 D 1 HETATM 13 N N9A NAP . . . T 3 -13.386 187.485 12.673 1 35.42 ? N9A NAP 1452 D 1 HETATM 14 C C8A NAP . . . T 3 -14.601 187.975 12.245 1 34.85 ? C8A NAP 1452 D 1 HETATM 15 N N7A NAP . . . T 3 -14.416 189.181 11.743 1 35.98 ? N7A NAP 1452 D 1 HETATM 16 C C5A NAP . . . T 3 -13.079 189.519 11.811 1 34.19 ? C5A NAP 1452 D 1 HETATM 17 C C6A NAP . . . T 3 -12.309 190.637 11.435 1 34.88 ? C6A NAP 1452 D 1 HETATM 18 N N6A NAP . . . T 3 -12.899 191.75 10.819 1 36.03 ? N6A NAP 1452 D 1 HETATM 19 N N1A NAP . . . T 3 -10.997 190.601 11.693 1 35.46 ? N1A NAP 1452 D 1 HETATM 20 C C2A NAP . . . T 3 -10.407 189.553 12.267 1 34.82 ? C2A NAP 1452 D 1 HETATM 21 N N3A NAP . . . T 3 -11.084 188.481 12.634 1 34.25 ? N3A NAP 1452 D 1 HETATM 22 C C4A NAP . . . T 3 -12.406 188.432 12.431 1 34.26 ? C4A NAP 1452 D 1 HETATM 23 O O3 NAP . . . T 3 -16.105 180.35 12.145 1 43.41 ? O3 NAP 1452 D 1 HETATM 24 P PN NAP . . . T 3 -14.842 179.369 11.874 1 44.28 ? PN NAP 1452 D 1 HETATM 25 O O1N NAP . . . T 3 -13.606 179.605 12.776 1 39.75 ? O1N NAP 1452 D 1 HETATM 26 O O2N NAP . . . T 3 -14.498 179.606 10.35 1 44.79 ? O2N NAP 1452 D 1 HETATM 27 O O5D NAP . . . T 3 -15.285 177.836 12.15 1 40.46 ? O5D NAP 1452 D 1 HETATM 28 C C5D NAP . . . T 3 -16.702 177.755 11.904 1 36.7 ? C5D NAP 1452 D 1 HETATM 29 C C4D NAP . . . T 3 -17.152 176.273 11.971 1 36.47 ? C4D NAP 1452 D 1 HETATM 30 O O4D NAP . . . T 3 -16.319 175.518 11.05 1 36.61 ? O4D NAP 1452 D 1 HETATM 31 C C3D NAP . . . T 3 -17.008 175.605 13.383 1 35.61 ? C3D NAP 1452 D 1 HETATM 32 O O3D NAP . . . T 3 -18.125 174.753 13.643 1 35.21 ? O3D NAP 1452 D 1 HETATM 33 C C2D NAP . . . T 3 -15.8 174.658 13.221 1 36.7 ? C2D NAP 1452 D 1 HETATM 34 O O2D NAP . . . T 3 -15.993 173.398 13.862 1 40.22 ? O2D NAP 1452 D 1 HETATM 35 C C1D NAP . . . T 3 -15.839 174.323 11.713 1 36.52 ? C1D NAP 1452 D 1 HETATM 36 N N1N NAP . . . T 3 -14.462 173.982 11.284 1 38.11 ? N1N NAP 1452 D 1 HETATM 37 C C2N NAP . . . T 3 -13.976 172.743 11.543 1 35.09 ? C2N NAP 1452 D 1 HETATM 38 C C3N NAP . . . T 3 -12.656 172.385 11.146 1 34.5 ? C3N NAP 1452 D 1 HETATM 39 C C7N NAP . . . T 3 -12.101 171.031 11.379 1 35.3 ? C7N NAP 1452 D 1 HETATM 40 O O7N NAP . . . T 3 -10.911 170.908 11.622 1 41.59 ? O7N NAP 1452 D 1 HETATM 41 N N7N NAP . . . T 3 -12.877 169.924 11.319 1 32.81 ? N7N NAP 1452 D 1 HETATM 42 C C4N NAP . . . T 3 -11.849 173.347 10.492 1 34.88 ? C4N NAP 1452 D 1 HETATM 43 C C5N NAP . . . T 3 -12.402 174.633 10.247 1 35.3 ? C5N NAP 1452 D 1 HETATM 44 C C6N NAP . . . T 3 -13.718 174.928 10.664 1 34.58 ? C6N NAP 1452 D 1 HETATM 45 P P2B NAP . . . T 3 -13.658 187.456 17.033 1 47.68 ? P2B NAP 1452 D 1 HETATM 46 O O1X NAP . . . T 3 -13.268 186.203 17.835 1 43.39 ? O1X NAP 1452 D 1 HETATM 47 O O2X NAP . . . T 3 -12.976 188.78 17.694 1 42.49 ? O2X NAP 1452 D 1 HETATM 48 O O3X NAP . . . T 3 -15.24 187.658 17.043 1 42.48 ? O3X NAP 1452 D 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 31 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 48 #