data_2VQ7 # _model_server_result.job_id 9IL9lJ27UcUKaI3YknpieQ _model_server_result.datetime_utc '2024-11-24 18:59:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2vq7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":1454}' # _entry.id 2VQ7 # _exptl.entry_id 2VQ7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2VQ7 _cell.length_a 219.589 _cell.length_b 219.589 _cell.length_c 133.61 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2VQ7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 61' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS dimeric 2 author_and_software_defined_assembly 1 PQS dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,G,H,I,J,S,T,U,V,W,Z 1 1 B,C,K,L,M,N,O,P,Q,R,X,Y 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 L N N ? 3 P N N ? 3 T N N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 361 n n PA O2A NAP sing 362 n n PA O5B NAP sing 363 n n PA O3 NAP sing 364 n n O2A HOA2 NAP sing 365 n n O5B C5B NAP sing 366 n n C5B C4B NAP sing 367 n n C5B H51A NAP sing 368 n n C5B H52A NAP sing 369 n n C4B O4B NAP sing 370 n n C4B C3B NAP sing 371 n n C4B H4B NAP sing 372 n n O4B C1B NAP sing 373 n n C3B O3B NAP sing 374 n n C3B C2B NAP sing 375 n n C3B H3B NAP sing 376 n n O3B HO3A NAP sing 377 n n C2B O2B NAP sing 378 n n C2B C1B NAP sing 379 n n C2B H2B NAP sing 380 n n O2B P2B NAP sing 381 n n C1B N9A NAP sing 382 n n C1B H1B NAP sing 383 n n N9A C8A NAP sing 384 n y N9A C4A NAP sing 385 n y C8A N7A NAP doub 386 n y C8A H8A NAP sing 387 n n N7A C5A NAP sing 388 n y C5A C6A NAP sing 389 n y C5A C4A NAP doub 390 n y C6A N6A NAP sing 391 n n C6A N1A NAP doub 392 n y N6A H61A NAP sing 393 n n N6A H62A NAP sing 394 n n N1A C2A NAP sing 395 n y C2A N3A NAP doub 396 n y C2A H2A NAP sing 397 n n N3A C4A NAP sing 398 n y O3 PN NAP sing 399 n n PN O1N NAP doub 400 n n PN O2N NAP sing 401 n n PN O5D NAP sing 402 n n O5D C5D NAP sing 403 n n C5D C4D NAP sing 404 n n C5D H51N NAP sing 405 n n C5D H52N NAP sing 406 n n C4D O4D NAP sing 407 n n C4D C3D NAP sing 408 n n C4D H4D NAP sing 409 n n O4D C1D NAP sing 410 n n C3D O3D NAP sing 411 n n C3D C2D NAP sing 412 n n C3D H3D NAP sing 413 n n O3D HO3N NAP sing 414 n n C2D O2D NAP sing 415 n n C2D C1D NAP sing 416 n n C2D H2D NAP sing 417 n n O2D HO2N NAP sing 418 n n C1D N1N NAP sing 419 n n C1D H1D NAP sing 420 n n N1N C2N NAP sing 421 n y N1N C6N NAP doub 422 n y C2N C3N NAP doub 423 n y C2N H2N NAP sing 424 n n C3N C7N NAP sing 425 n n C3N C4N NAP sing 426 n y C7N O7N NAP doub 427 n n C7N N7N NAP sing 428 n n N7N H71N NAP sing 429 n n N7N H72N NAP sing 430 n n C4N C5N NAP doub 431 n y C4N H4N NAP sing 432 n n C5N C6N NAP sing 433 n y C5N H5N NAP sing 434 n n C6N H6N NAP sing 435 n n P2B O1X NAP doub 436 n n P2B O2X NAP sing 437 n n P2B O3X NAP sing 438 n n O2X HOP2 NAP sing 439 n n O3X HOP3 NAP sing 440 n n # _atom_sites.entry_id 2VQ7 _atom_sites.fract_transf_matrix[1][1] 0.004554 _atom_sites.fract_transf_matrix[1][2] 0.002629 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005258 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007484 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 FAD A 1 1451 1451 FAD FAD . F 3 NAP A 1 1452 1452 NAP NAP . G 4 CL A 1 1453 1453 CL CL . H 5 EPE A 1 1454 1454 EPE EPE . I 5 EPE A 1 1455 1455 EPE EPE . J 6 PGE A 1 1456 1456 PGE PGE . K 2 FAD B 1 1451 1451 FAD FAD . L 3 NAP B 1 1452 1452 NAP NAP . M 7 PG4 B 1 1453 1453 PG4 PG4 . N 4 CL B 1 1454 1454 CL CL . O 2 FAD C 1 1453 1453 FAD FAD . P 3 NAP C 1 1454 1454 NAP NAP . Q 4 CL C 1 1455 1455 CL CL . R 5 EPE C 1 1456 1456 EPE EPE . S 2 FAD D 1 1451 1451 FAD FAD . T 3 NAP D 1 1452 1452 NAP NAP . U 4 CL D 1 1453 1453 CL CL . V 5 EPE D 1 1454 1454 EPE EPE . W 8 HOH A 1 2001 2001 HOH HOH . W 8 HOH A 2 2002 2002 HOH HOH . W 8 HOH A 3 2003 2003 HOH HOH . W 8 HOH A 4 2004 2004 HOH HOH . W 8 HOH A 5 2005 2005 HOH HOH . W 8 HOH A 6 2006 2006 HOH HOH . W 8 HOH A 7 2007 2007 HOH HOH . W 8 HOH A 8 2008 2008 HOH HOH . W 8 HOH A 9 2009 2009 HOH HOH . W 8 HOH A 10 2010 2010 HOH HOH . W 8 HOH A 11 2011 2011 HOH HOH . W 8 HOH A 12 2012 2012 HOH HOH . W 8 HOH A 13 2013 2013 HOH HOH . W 8 HOH A 14 2014 2014 HOH HOH . W 8 HOH A 15 2015 2015 HOH HOH . W 8 HOH A 16 2016 2016 HOH HOH . W 8 HOH A 17 2017 2017 HOH HOH . W 8 HOH A 18 2018 2018 HOH HOH . W 8 HOH A 19 2019 2019 HOH HOH . W 8 HOH A 20 2020 2020 HOH HOH . W 8 HOH A 21 2021 2021 HOH HOH . W 8 HOH A 22 2022 2022 HOH HOH . W 8 HOH A 23 2023 2023 HOH HOH . W 8 HOH A 24 2024 2024 HOH HOH . W 8 HOH A 25 2025 2025 HOH HOH . W 8 HOH A 26 2026 2026 HOH HOH . W 8 HOH A 27 2027 2027 HOH HOH . W 8 HOH A 28 2028 2028 HOH HOH . W 8 HOH A 29 2029 2029 HOH HOH . W 8 HOH A 30 2030 2030 HOH HOH . W 8 HOH A 31 2031 2031 HOH HOH . W 8 HOH A 32 2032 2032 HOH HOH . W 8 HOH A 33 2033 2033 HOH HOH . W 8 HOH A 34 2034 2034 HOH HOH . W 8 HOH A 35 2035 2035 HOH HOH . W 8 HOH A 36 2036 2036 HOH HOH . W 8 HOH A 37 2037 2037 HOH HOH . W 8 HOH A 38 2038 2038 HOH HOH . W 8 HOH A 39 2039 2039 HOH HOH . W 8 HOH A 40 2040 2040 HOH HOH . W 8 HOH A 41 2041 2041 HOH HOH . X 8 HOH B 1 2001 2001 HOH HOH . X 8 HOH B 2 2002 2002 HOH HOH . X 8 HOH B 3 2003 2003 HOH HOH . X 8 HOH B 4 2004 2004 HOH HOH . X 8 HOH B 5 2005 2005 HOH HOH . X 8 HOH B 6 2006 2006 HOH HOH . X 8 HOH B 7 2007 2007 HOH HOH . X 8 HOH B 8 2008 2008 HOH HOH . X 8 HOH B 9 2009 2009 HOH HOH . X 8 HOH B 10 2010 2010 HOH HOH . X 8 HOH B 11 2011 2011 HOH HOH . X 8 HOH B 12 2012 2012 HOH HOH . X 8 HOH B 13 2013 2013 HOH HOH . X 8 HOH B 14 2014 2014 HOH HOH . X 8 HOH B 15 2015 2015 HOH HOH . X 8 HOH B 16 2016 2016 HOH HOH . X 8 HOH B 17 2017 2017 HOH HOH . X 8 HOH B 18 2018 2018 HOH HOH . X 8 HOH B 19 2019 2019 HOH HOH . X 8 HOH B 20 2020 2020 HOH HOH . X 8 HOH B 21 2021 2021 HOH HOH . X 8 HOH B 22 2022 2022 HOH HOH . X 8 HOH B 23 2023 2023 HOH HOH . X 8 HOH B 24 2024 2024 HOH HOH . X 8 HOH B 25 2025 2025 HOH HOH . X 8 HOH B 26 2026 2026 HOH HOH . X 8 HOH B 27 2027 2027 HOH HOH . X 8 HOH B 28 2028 2028 HOH HOH . X 8 HOH B 29 2029 2029 HOH HOH . X 8 HOH B 30 2030 2030 HOH HOH . X 8 HOH B 31 2031 2031 HOH HOH . X 8 HOH B 32 2032 2032 HOH HOH . X 8 HOH B 33 2033 2033 HOH HOH . Y 8 HOH C 1 2001 2001 HOH HOH . Y 8 HOH C 2 2002 2002 HOH HOH . Y 8 HOH C 3 2003 2003 HOH HOH . Y 8 HOH C 4 2004 2004 HOH HOH . Y 8 HOH C 5 2005 2005 HOH HOH . Y 8 HOH C 6 2006 2006 HOH HOH . Y 8 HOH C 7 2007 2007 HOH HOH . Y 8 HOH C 8 2008 2008 HOH HOH . Y 8 HOH C 9 2009 2009 HOH HOH . Y 8 HOH C 10 2010 2010 HOH HOH . Y 8 HOH C 11 2011 2011 HOH HOH . Y 8 HOH C 12 2012 2012 HOH HOH . Y 8 HOH C 13 2013 2013 HOH HOH . Y 8 HOH C 14 2014 2014 HOH HOH . Y 8 HOH C 15 2015 2015 HOH HOH . Y 8 HOH C 16 2016 2016 HOH HOH . Y 8 HOH C 17 2017 2017 HOH HOH . Y 8 HOH C 18 2018 2018 HOH HOH . Y 8 HOH C 19 2019 2019 HOH HOH . Y 8 HOH C 20 2020 2020 HOH HOH . Y 8 HOH C 21 2021 2021 HOH HOH . Y 8 HOH C 22 2022 2022 HOH HOH . Y 8 HOH C 23 2023 2023 HOH HOH . Y 8 HOH C 24 2024 2024 HOH HOH . Y 8 HOH C 25 2025 2025 HOH HOH . Y 8 HOH C 26 2026 2026 HOH HOH . Z 8 HOH D 1 2001 2001 HOH HOH . Z 8 HOH D 2 2002 2002 HOH HOH . Z 8 HOH D 3 2003 2003 HOH HOH . Z 8 HOH D 4 2004 2004 HOH HOH . Z 8 HOH D 5 2005 2005 HOH HOH . Z 8 HOH D 6 2006 2006 HOH HOH . Z 8 HOH D 7 2007 2007 HOH HOH . Z 8 HOH D 8 2008 2008 HOH HOH . Z 8 HOH D 9 2009 2009 HOH HOH . Z 8 HOH D 10 2010 2010 HOH HOH . Z 8 HOH D 11 2011 2011 HOH HOH . Z 8 HOH D 12 2012 2012 HOH HOH . Z 8 HOH D 13 2013 2013 HOH HOH . Z 8 HOH D 14 2014 2014 HOH HOH . Z 8 HOH D 15 2015 2015 HOH HOH . Z 8 HOH D 16 2016 2016 HOH HOH . Z 8 HOH D 17 2017 2017 HOH HOH . Z 8 HOH D 18 2018 2018 HOH HOH . Z 8 HOH D 19 2019 2019 HOH HOH . Z 8 HOH D 20 2020 2020 HOH HOH . Z 8 HOH D 21 2021 2021 HOH HOH . Z 8 HOH D 22 2022 2022 HOH HOH . Z 8 HOH D 23 2023 2023 HOH HOH . Z 8 HOH D 24 2024 2024 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . P 3 -24.335 230.141 -13.65 1 45.45 ? PA NAP 1454 C 1 HETATM 2 O O1A NAP . . . P 3 -24.645 231.234 -14.606 1 42.68 ? O1A NAP 1454 C 1 HETATM 3 O O2A NAP . . . P 3 -25.252 228.827 -13.875 1 41.49 ? O2A NAP 1454 C 1 HETATM 4 O O5B NAP . . . P 3 -22.804 229.661 -13.794 1 42.17 ? O5B NAP 1454 C 1 HETATM 5 C C5B NAP . . . P 3 -22.651 228.256 -13.589 1 37.87 ? C5B NAP 1454 C 1 HETATM 6 C C4B NAP . . . P 3 -21.119 228.062 -13.665 1 37.58 ? C4B NAP 1454 C 1 HETATM 7 O O4B NAP . . . P 3 -20.718 227.122 -12.651 1 38.51 ? O4B NAP 1454 C 1 HETATM 8 C C3B NAP . . . P 3 -20.683 227.45 -15.035 1 38.1 ? C3B NAP 1454 C 1 HETATM 9 O O3B NAP . . . P 3 -19.465 228.059 -15.48 1 41 ? O3B NAP 1454 C 1 HETATM 10 C C2B NAP . . . P 3 -20.396 225.958 -14.708 1 37.59 ? C2B NAP 1454 C 1 HETATM 11 O O2B NAP . . . P 3 -19.35 225.306 -15.478 1 42.32 ? O2B NAP 1454 C 1 HETATM 12 C C1B NAP . . . P 3 -19.788 226.206 -13.303 1 36.11 ? C1B NAP 1454 C 1 HETATM 13 N N9A NAP . . . P 3 -19.634 224.91 -12.643 1 35.5 ? N9A NAP 1454 C 1 HETATM 14 C C8A NAP . . . P 3 -20.618 224.023 -12.244 1 35.06 ? C8A NAP 1454 C 1 HETATM 15 N N7A NAP . . . P 3 -20.064 222.927 -11.712 1 35.81 ? N7A NAP 1454 C 1 HETATM 16 C C5A NAP . . . P 3 -18.687 223.073 -11.741 1 34.18 ? C5A NAP 1454 C 1 HETATM 17 C C6A NAP . . . P 3 -17.576 222.299 -11.325 1 34.98 ? C6A NAP 1454 C 1 HETATM 18 N N6A NAP . . . P 3 -17.747 221.049 -10.728 1 35.94 ? N6A NAP 1454 C 1 HETATM 19 N N1A NAP . . . P 3 -16.338 222.776 -11.537 1 35.37 ? N1A NAP 1454 C 1 HETATM 20 C C2A NAP . . . P 3 -16.142 223.945 -12.111 1 34.8 ? C2A NAP 1454 C 1 HETATM 21 N N3A NAP . . . P 3 -17.153 224.711 -12.505 1 34.51 ? N3A NAP 1454 C 1 HETATM 22 C C4A NAP . . . P 3 -18.412 224.327 -12.358 1 34.19 ? C4A NAP 1454 C 1 HETATM 23 O O3 NAP . . . P 3 -24.546 230.776 -12.139 1 43.64 ? O3 NAP 1454 C 1 HETATM 24 P PN NAP . . . P 3 -23.652 232.128 -11.836 1 44.07 ? PN NAP 1454 C 1 HETATM 25 O O1N NAP . . . P 3 -22.377 232.272 -12.707 1 39.59 ? O1N NAP 1454 C 1 HETATM 26 O O2N NAP . . . P 3 -23.248 231.974 -10.343 1 44.87 ? O2N NAP 1454 C 1 HETATM 27 O O5D NAP . . . P 3 -24.582 233.444 -12.03 1 40.28 ? O5D NAP 1454 C 1 HETATM 28 C C5D NAP . . . P 3 -25.956 233.015 -11.946 1 36.68 ? C5D NAP 1454 C 1 HETATM 29 C C4D NAP . . . P 3 -26.881 234.244 -11.944 1 36.44 ? C4D NAP 1454 C 1 HETATM 30 O O4D NAP . . . P 3 -26.346 235.214 -10.992 1 36.76 ? O4D NAP 1454 C 1 HETATM 31 C C3D NAP . . . P 3 -26.955 234.954 -13.338 1 35.52 ? C3D NAP 1454 C 1 HETATM 32 O O3D NAP . . . P 3 -28.283 235.419 -13.561 1 34.98 ? O3D NAP 1454 C 1 HETATM 33 C C2D NAP . . . P 3 -26.118 236.243 -13.154 1 36.72 ? C2D NAP 1454 C 1 HETATM 34 O O2D NAP . . . P 3 -26.685 237.374 -13.81 1 40.24 ? O2D NAP 1454 C 1 HETATM 35 C C1D NAP . . . P 3 -26.297 236.525 -11.634 1 36.68 ? C1D NAP 1454 C 1 HETATM 36 N N1N NAP . . . P 3 -25.115 237.306 -11.185 1 38.17 ? N1N NAP 1454 C 1 HETATM 37 C C2N NAP . . . P 3 -25.069 238.634 -11.452 1 35.09 ? C2N NAP 1454 C 1 HETATM 38 C C3N NAP . . . P 3 -23.946 239.403 -11.059 1 34.6 ? C3N NAP 1454 C 1 HETATM 39 C C7N NAP . . . P 3 -23.879 240.862 -11.288 1 35.29 ? C7N NAP 1454 C 1 HETATM 40 O O7N NAP . . . P 3 -22.792 241.344 -11.56 1 41.52 ? O7N NAP 1454 C 1 HETATM 41 N N7N NAP . . . P 3 -24.979 241.662 -11.167 1 32.84 ? N7N NAP 1454 C 1 HETATM 42 C C4N NAP . . . P 3 -22.871 238.754 -10.392 1 34.84 ? C4N NAP 1454 C 1 HETATM 43 C C5N NAP . . . P 3 -22.969 237.356 -10.157 1 35.17 ? C5N NAP 1454 C 1 HETATM 44 C C6N NAP . . . P 3 -24.102 236.645 -10.578 1 34.4 ? C6N NAP 1454 C 1 HETATM 45 P P2B NAP . . . P 3 -19.815 224.922 -16.975 1 47.67 ? P2B NAP 1454 C 1 HETATM 46 O O1X NAP . . . P 3 -19.863 226.204 -17.821 1 43.44 ? O1X NAP 1454 C 1 HETATM 47 O O2X NAP . . . P 3 -18.748 223.86 -17.614 1 42.24 ? O2X NAP 1454 C 1 HETATM 48 O O3X NAP . . . P 3 -21.289 224.269 -17.003 1 42.69 ? O3X NAP 1454 C 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 36 _model_server_stats.query_time_ms 353 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 48 #