data_2VQB
#
_model_server_result.job_id            uqRX35hscXgJpFD-ZzX72g 
_model_server_result.datetime_utc      '2024-11-08 01:34:22' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2vqb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"N","auth_seq_id":1452}' 
#
_entry.id    2VQB 
#
_exptl.entry_id    2VQB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              238.305 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            2VQB 
_cell.length_a            218.665 
_cell.length_b            218.665 
_cell.length_c            130.676 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2VQB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        169 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 61' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PQS dimeric 2 author_and_software_defined_assembly 1 
PQS dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,E,F,G,H,I,J,W,X,Y,Z,AA,BA 1 1 
B,C,K,L,M,N,O,P,Q,R,S,T,U,V 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 H N N 
? 5 N N N 
? 5 S N N 
? 5 Z N N 
#
_chem_comp.formula           'C8 H18 N2 O4 S' 
_chem_comp.formula_weight    238.305 
_chem_comp.id                EPE 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEPES 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 EPE sing 83 n n 
N1 C6 EPE sing 84 n n 
N1 C9 EPE sing 85 n n 
C2 C3 EPE sing 86 n n 
C2 H21 EPE sing 87 n n 
C2 H22 EPE sing 88 n n 
C3 N4 EPE sing 89 n n 
C3 H31 EPE sing 90 n n 
C3 H32 EPE sing 91 n n 
N4 C5 EPE sing 92 n n 
N4 C7 EPE sing 93 n n 
C5 C6 EPE sing 94 n n 
C5 H51 EPE sing 95 n n 
C5 H52 EPE sing 96 n n 
C6 H61 EPE sing 97 n n 
C6 H62 EPE sing 98 n n 
C7 C8 EPE sing 99 n n 
C7 H71 EPE sing 100 n n 
C7 H72 EPE sing 101 n n 
C8 O8 EPE sing 102 n n 
C8 H81 EPE sing 103 n n 
C8 H82 EPE sing 104 n n 
O8 HO8 EPE sing 105 n n 
C9 C10 EPE sing 106 n n 
C9 H91 EPE sing 107 n n 
C9 H92 EPE sing 108 n n 
C10 S EPE sing 109 n n 
C10 H101 EPE sing 110 n n 
C10 H102 EPE sing 111 n n 
S O1S EPE doub 112 n n 
S O2S EPE doub 113 n n 
S O3S EPE sing 114 n n 
O3S HOS3 EPE sing 115 n n 
#
_atom_sites.entry_id                     2VQB 
_atom_sites.fract_transf_matrix[1][1]    0.004573 
_atom_sites.fract_transf_matrix[1][2]    0.00264 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005281 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007653 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 FAD A 1 500 500 FAD FAD . 
F 3 NAP A 1 501 501 NAP NAP . 
G 4 CL A 1 1451 1451 CL CL . 
H 5 EPE A 1 1452 1452 EPE EPE . 
I 6 OXY A 1 1453 1453 OXY OXY . 
J 6 OXY A 1 1454 1454 OXY OXY . 
K 2 FAD B 1 500 500 FAD FAD . 
L 3 NAP B 1 501 501 NAP NAP . 
M 4 CL B 1 1451 1451 CL CL . 
N 5 EPE B 1 1452 1452 EPE EPE . 
O 6 OXY B 1 1453 1453 OXY OXY . 
P 6 OXY B 1 1454 1454 OXY OXY . 
Q 2 FAD C 1 500 500 FAD FAD . 
R 3 NAP C 1 501 501 NAP NAP . 
S 5 EPE C 1 1451 1451 EPE EPE . 
T 6 OXY C 1 1452 1452 OXY OXY . 
U 6 OXY C 1 1453 1453 OXY OXY . 
V 4 CL C 1 1454 1454 CL CL . 
W 2 FAD D 1 500 500 FAD FAD . 
X 3 NAP D 1 501 501 NAP NAP . 
Y 4 CL D 1 1451 1451 CL CL . 
Z 5 EPE D 1 1452 1452 EPE EPE . 
AA 6 OXY D 1 1453 1453 OXY OXY . 
BA 6 OXY D 1 1454 1454 OXY OXY . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 EPE . . . N 5 -40.967 203.442 0.165 1 107.29 ? N1 EPE 1452 B 1 
HETATM 2 C C2 EPE . . . N 5 -39.607 202.917 0.452 1 107.24 ? C2 EPE 1452 B 1 
HETATM 3 C C3 EPE . . . N 5 -38.499 203.812 -0.102 1 107.01 ? C3 EPE 1452 B 1 
HETATM 4 N N4 EPE . . . N 5 -38.76 204.338 -1.446 1 107.82 ? N4 EPE 1452 B 1 
HETATM 5 C C5 EPE . . . N 5 -40.13 204.54 -1.945 1 107.21 ? C5 EPE 1452 B 1 
HETATM 6 C C6 EPE . . . N 5 -41.224 203.694 -1.277 1 106.99 ? C6 EPE 1452 B 1 
HETATM 7 C C7 EPE . . . N 5 -37.674 205.021 -2.159 1 107.94 ? C7 EPE 1452 B 1 
HETATM 8 C C8 EPE . . . N 5 -36.266 204.45 -1.923 1 108.23 ? C8 EPE 1452 B 1 
HETATM 9 O O8 EPE . . . N 5 -35.885 203.544 -2.949 1 108.05 ? O8 EPE 1452 B 1 
HETATM 10 C C9 EPE . . . N 5 -41.963 202.485 0.699 1 107.35 ? C9 EPE 1452 B 1 
HETATM 11 C C10 EPE . . . N 5 -42.626 202.996 1.989 1 107.23 ? C10 EPE 1452 B 1 
HETATM 12 S S EPE . . . N 5 -42.232 202.066 3.509 1 106.77 ? S EPE 1452 B 1 
HETATM 13 O O1S EPE . . . N 5 -43.479 201.805 4.234 1 106.36 ? O1S EPE 1452 B 1 
HETATM 14 O O2S EPE . . . N 5 -41.381 202.875 4.374 1 106.13 ? O2S EPE 1452 B 1 
HETATM 15 O O3S EPE . . . N 5 -41.521 200.822 3.184 1 106 ? O3S EPE 1452 B 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    38 
_model_server_stats.query_time_ms           310 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           15 
#