data_2VQB # _model_server_result.job_id AbgOoGVKJPtLVZgRvWy6HQ _model_server_result.datetime_utc '2024-11-24 21:31:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2vqb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":1452}' # _entry.id 2VQB # _exptl.entry_id 2VQB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.305 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2VQB _cell.length_a 218.665 _cell.length_b 218.665 _cell.length_c 130.676 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2VQB _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 61' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS dimeric 2 author_and_software_defined_assembly 1 PQS dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,G,H,I,J,W,X,Y,Z,AA,BA 1 1 B,C,K,L,M,N,O,P,Q,R,S,T,U,V 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 H N N ? 5 N N N ? 5 S N N ? 5 Z N N # _chem_comp.formula 'C8 H18 N2 O4 S' _chem_comp.formula_weight 238.305 _chem_comp.id EPE _chem_comp.mon_nstd_flag . _chem_comp.name '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEPES # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 EPE sing 83 n n N1 C6 EPE sing 84 n n N1 C9 EPE sing 85 n n C2 C3 EPE sing 86 n n C2 H21 EPE sing 87 n n C2 H22 EPE sing 88 n n C3 N4 EPE sing 89 n n C3 H31 EPE sing 90 n n C3 H32 EPE sing 91 n n N4 C5 EPE sing 92 n n N4 C7 EPE sing 93 n n C5 C6 EPE sing 94 n n C5 H51 EPE sing 95 n n C5 H52 EPE sing 96 n n C6 H61 EPE sing 97 n n C6 H62 EPE sing 98 n n C7 C8 EPE sing 99 n n C7 H71 EPE sing 100 n n C7 H72 EPE sing 101 n n C8 O8 EPE sing 102 n n C8 H81 EPE sing 103 n n C8 H82 EPE sing 104 n n O8 HO8 EPE sing 105 n n C9 C10 EPE sing 106 n n C9 H91 EPE sing 107 n n C9 H92 EPE sing 108 n n C10 S EPE sing 109 n n C10 H101 EPE sing 110 n n C10 H102 EPE sing 111 n n S O1S EPE doub 112 n n S O2S EPE doub 113 n n S O3S EPE sing 114 n n O3S HOS3 EPE sing 115 n n # _atom_sites.entry_id 2VQB _atom_sites.fract_transf_matrix[1][1] 0.004573 _atom_sites.fract_transf_matrix[1][2] 0.00264 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005281 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007653 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 FAD A 1 500 500 FAD FAD . F 3 NAP A 1 501 501 NAP NAP . G 4 CL A 1 1451 1451 CL CL . H 5 EPE A 1 1452 1452 EPE EPE . I 6 OXY A 1 1453 1453 OXY OXY . J 6 OXY A 1 1454 1454 OXY OXY . K 2 FAD B 1 500 500 FAD FAD . L 3 NAP B 1 501 501 NAP NAP . M 4 CL B 1 1451 1451 CL CL . N 5 EPE B 1 1452 1452 EPE EPE . O 6 OXY B 1 1453 1453 OXY OXY . P 6 OXY B 1 1454 1454 OXY OXY . Q 2 FAD C 1 500 500 FAD FAD . R 3 NAP C 1 501 501 NAP NAP . S 5 EPE C 1 1451 1451 EPE EPE . T 6 OXY C 1 1452 1452 OXY OXY . U 6 OXY C 1 1453 1453 OXY OXY . V 4 CL C 1 1454 1454 CL CL . W 2 FAD D 1 500 500 FAD FAD . X 3 NAP D 1 501 501 NAP NAP . Y 4 CL D 1 1451 1451 CL CL . Z 5 EPE D 1 1452 1452 EPE EPE . AA 6 OXY D 1 1453 1453 OXY OXY . BA 6 OXY D 1 1454 1454 OXY OXY . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 EPE . . . N 5 -40.967 203.442 0.165 1 107.29 ? N1 EPE 1452 B 1 HETATM 2 C C2 EPE . . . N 5 -39.607 202.917 0.452 1 107.24 ? C2 EPE 1452 B 1 HETATM 3 C C3 EPE . . . N 5 -38.499 203.812 -0.102 1 107.01 ? C3 EPE 1452 B 1 HETATM 4 N N4 EPE . . . N 5 -38.76 204.338 -1.446 1 107.82 ? N4 EPE 1452 B 1 HETATM 5 C C5 EPE . . . N 5 -40.13 204.54 -1.945 1 107.21 ? C5 EPE 1452 B 1 HETATM 6 C C6 EPE . . . N 5 -41.224 203.694 -1.277 1 106.99 ? C6 EPE 1452 B 1 HETATM 7 C C7 EPE . . . N 5 -37.674 205.021 -2.159 1 107.94 ? C7 EPE 1452 B 1 HETATM 8 C C8 EPE . . . N 5 -36.266 204.45 -1.923 1 108.23 ? C8 EPE 1452 B 1 HETATM 9 O O8 EPE . . . N 5 -35.885 203.544 -2.949 1 108.05 ? O8 EPE 1452 B 1 HETATM 10 C C9 EPE . . . N 5 -41.963 202.485 0.699 1 107.35 ? C9 EPE 1452 B 1 HETATM 11 C C10 EPE . . . N 5 -42.626 202.996 1.989 1 107.23 ? C10 EPE 1452 B 1 HETATM 12 S S EPE . . . N 5 -42.232 202.066 3.509 1 106.77 ? S EPE 1452 B 1 HETATM 13 O O1S EPE . . . N 5 -43.479 201.805 4.234 1 106.36 ? O1S EPE 1452 B 1 HETATM 14 O O2S EPE . . . N 5 -41.381 202.875 4.374 1 106.13 ? O2S EPE 1452 B 1 HETATM 15 O O3S EPE . . . N 5 -41.521 200.822 3.184 1 106 ? O3S EPE 1452 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 30 _model_server_stats.query_time_ms 334 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 15 #