data_2VQB # _model_server_result.job_id k5qzhkhcn5C0fkvtWTHU0w _model_server_result.datetime_utc '2024-11-08 01:43:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2vqb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":1454}' # _entry.id 2VQB # _exptl.entry_id 2VQB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 31.999 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'OXYGEN MOLECULE' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2VQB _cell.length_a 218.665 _cell.length_b 218.665 _cell.length_c 130.676 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2VQB _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 61' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS dimeric 2 author_and_software_defined_assembly 1 PQS dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,G,H,I,J,W,X,Y,Z,AA,BA 1 1 B,C,K,L,M,N,O,P,Q,R,S,T,U,V 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 I N N ? 6 J N N ? 6 O N N ? 6 P N N ? 6 T N N ? 6 U N N ? 6 AA N N ? 6 BA N N # _chem_comp.formula O2 _chem_comp.formula_weight 31.999 _chem_comp.id OXY _chem_comp.mon_nstd_flag . _chem_comp.name 'OXYGEN MOLECULE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _chem_comp_bond.atom_id_1 O1 _chem_comp_bond.atom_id_2 O2 _chem_comp_bond.comp_id OXY _chem_comp_bond.value_order doub _chem_comp_bond.pdbx_ordinal 439 _chem_comp_bond.pdbx_stereo_config n _chem_comp_bond.pdbx_aromatic_flag n # _atom_sites.entry_id 2VQB _atom_sites.fract_transf_matrix[1][1] 0.004573 _atom_sites.fract_transf_matrix[1][2] 0.00264 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005281 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007653 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 FAD A 1 500 500 FAD FAD . F 3 NAP A 1 501 501 NAP NAP . G 4 CL A 1 1451 1451 CL CL . H 5 EPE A 1 1452 1452 EPE EPE . I 6 OXY A 1 1453 1453 OXY OXY . J 6 OXY A 1 1454 1454 OXY OXY . K 2 FAD B 1 500 500 FAD FAD . L 3 NAP B 1 501 501 NAP NAP . M 4 CL B 1 1451 1451 CL CL . N 5 EPE B 1 1452 1452 EPE EPE . O 6 OXY B 1 1453 1453 OXY OXY . P 6 OXY B 1 1454 1454 OXY OXY . Q 2 FAD C 1 500 500 FAD FAD . R 3 NAP C 1 501 501 NAP NAP . S 5 EPE C 1 1451 1451 EPE EPE . T 6 OXY C 1 1452 1452 OXY OXY . U 6 OXY C 1 1453 1453 OXY OXY . V 4 CL C 1 1454 1454 CL CL . W 2 FAD D 1 500 500 FAD FAD . X 3 NAP D 1 501 501 NAP NAP . Y 4 CL D 1 1451 1451 CL CL . Z 5 EPE D 1 1452 1452 EPE EPE . AA 6 OXY D 1 1453 1453 OXY OXY . BA 6 OXY D 1 1454 1454 OXY OXY . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 OXY . . . P 6 -20.852 218.847 27.278 1 54.14 ? O1 OXY 1454 B 1 HETATM 2 O O2 OXY . . . P 6 -20.126 219.498 26.611 1 53.19 ? O2 OXY 1454 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 52 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 2 #