data_2VQB
#
_model_server_result.job_id            u0GVHY_8lz56vk9Wbt-11A 
_model_server_result.datetime_utc      '2024-11-24 21:55:30' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2vqb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"W","auth_seq_id":500}' 
#
_entry.id    2VQB 
#
_exptl.entry_id    2VQB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              785.55 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN-ADENINE DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            2VQB 
_cell.length_a            218.665 
_cell.length_b            218.665 
_cell.length_c            130.676 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2VQB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        169 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 61' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PQS dimeric 2 author_and_software_defined_assembly 1 
PQS dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,E,F,G,H,I,J,W,X,Y,Z,AA,BA 1 1 
B,C,K,L,M,N,O,P,Q,R,S,T,U,V 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 K N N 
? 2 Q N N 
? 2 W N N 
#
_chem_comp.formula           'C27 H33 N9 O15 P2' 
_chem_comp.formula_weight    785.55 
_chem_comp.id                FAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN-ADENINE DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A FAD doub 116 n n 
PA O2A FAD sing 117 n n 
PA O5B FAD sing 118 n n 
PA O3P FAD sing 119 n n 
O2A HOA2 FAD sing 120 n n 
O5B C5B FAD sing 121 n n 
C5B C4B FAD sing 122 n n 
C5B H51A FAD sing 123 n n 
C5B H52A FAD sing 124 n n 
C4B O4B FAD sing 125 n n 
C4B C3B FAD sing 126 n n 
C4B H4B FAD sing 127 n n 
O4B C1B FAD sing 128 n n 
C3B O3B FAD sing 129 n n 
C3B C2B FAD sing 130 n n 
C3B H3B FAD sing 131 n n 
O3B HO3A FAD sing 132 n n 
C2B O2B FAD sing 133 n n 
C2B C1B FAD sing 134 n n 
C2B H2B FAD sing 135 n n 
O2B HO2A FAD sing 136 n n 
C1B N9A FAD sing 137 n n 
C1B H1B FAD sing 138 n n 
N9A C8A FAD sing 139 n y 
N9A C4A FAD sing 140 n y 
C8A N7A FAD doub 141 n y 
C8A H8A FAD sing 142 n n 
N7A C5A FAD sing 143 n y 
C5A C6A FAD sing 144 n y 
C5A C4A FAD doub 145 n y 
C6A N6A FAD sing 146 n n 
C6A N1A FAD doub 147 n y 
N6A H61A FAD sing 148 n n 
N6A H62A FAD sing 149 n n 
N1A C2A FAD sing 150 n y 
C2A N3A FAD doub 151 n y 
C2A H2A FAD sing 152 n n 
N3A C4A FAD sing 153 n y 
N1 C2 FAD sing 154 n n 
N1 C10 FAD doub 155 n n 
C2 O2 FAD doub 156 n n 
C2 N3 FAD sing 157 n n 
N3 C4 FAD sing 158 n n 
N3 HN3 FAD sing 159 n n 
C4 O4 FAD doub 160 n n 
C4 C4X FAD sing 161 n n 
C4X N5 FAD doub 162 n n 
C4X C10 FAD sing 163 n n 
N5 C5X FAD sing 164 n n 
C5X C6 FAD doub 165 n y 
C5X C9A FAD sing 166 n y 
C6 C7 FAD sing 167 n y 
C6 H6 FAD sing 168 n n 
C7 C7M FAD sing 169 n n 
C7 C8 FAD doub 170 n y 
C7M HM71 FAD sing 171 n n 
C7M HM72 FAD sing 172 n n 
C7M HM73 FAD sing 173 n n 
C8 C8M FAD sing 174 n n 
C8 C9 FAD sing 175 n y 
C8M HM81 FAD sing 176 n n 
C8M HM82 FAD sing 177 n n 
C8M HM83 FAD sing 178 n n 
C9 C9A FAD doub 179 n y 
C9 H9 FAD sing 180 n n 
C9A N10 FAD sing 181 n n 
N10 C10 FAD sing 182 n n 
N10 C1' FAD sing 183 n n 
C1' C2' FAD sing 184 n n 
C1' "H1'1" FAD sing 185 n n 
C1' "H1'2" FAD sing 186 n n 
C2' O2' FAD sing 187 n n 
C2' C3' FAD sing 188 n n 
C2' H2' FAD sing 189 n n 
O2' HO2' FAD sing 190 n n 
C3' O3' FAD sing 191 n n 
C3' C4' FAD sing 192 n n 
C3' H3' FAD sing 193 n n 
O3' HO3' FAD sing 194 n n 
C4' O4' FAD sing 195 n n 
C4' C5' FAD sing 196 n n 
C4' H4' FAD sing 197 n n 
O4' HO4' FAD sing 198 n n 
C5' O5' FAD sing 199 n n 
C5' "H5'1" FAD sing 200 n n 
C5' "H5'2" FAD sing 201 n n 
O5' P FAD sing 202 n n 
P O1P FAD doub 203 n n 
P O2P FAD sing 204 n n 
P O3P FAD sing 205 n n 
O2P HOP2 FAD sing 206 n n 
#
_atom_sites.entry_id                     2VQB 
_atom_sites.fract_transf_matrix[1][1]    0.004573 
_atom_sites.fract_transf_matrix[1][2]    0.00264 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005281 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007653 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 FAD A 1 500 500 FAD FAD . 
F 3 NAP A 1 501 501 NAP NAP . 
G 4 CL A 1 1451 1451 CL CL . 
H 5 EPE A 1 1452 1452 EPE EPE . 
I 6 OXY A 1 1453 1453 OXY OXY . 
J 6 OXY A 1 1454 1454 OXY OXY . 
K 2 FAD B 1 500 500 FAD FAD . 
L 3 NAP B 1 501 501 NAP NAP . 
M 4 CL B 1 1451 1451 CL CL . 
N 5 EPE B 1 1452 1452 EPE EPE . 
O 6 OXY B 1 1453 1453 OXY OXY . 
P 6 OXY B 1 1454 1454 OXY OXY . 
Q 2 FAD C 1 500 500 FAD FAD . 
R 3 NAP C 1 501 501 NAP NAP . 
S 5 EPE C 1 1451 1451 EPE EPE . 
T 6 OXY C 1 1452 1452 OXY OXY . 
U 6 OXY C 1 1453 1453 OXY OXY . 
V 4 CL C 1 1454 1454 CL CL . 
W 2 FAD D 1 500 500 FAD FAD . 
X 3 NAP D 1 501 501 NAP NAP . 
Y 4 CL D 1 1451 1451 CL CL . 
Z 5 EPE D 1 1452 1452 EPE EPE . 
AA 6 OXY D 1 1453 1453 OXY OXY . 
BA 6 OXY D 1 1454 1454 OXY OXY . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA FAD . . . W 2 -24.684 170.694 6.197 1 38.19 ? PA FAD 500 D 1 
HETATM 2 O O1A FAD . . . W 2 -24.037 171.948 5.686 1 39.97 ? O1A FAD 500 D 1 
HETATM 3 O O2A FAD . . . W 2 -23.701 169.628 6.526 1 39.21 ? O2A FAD 500 D 1 
HETATM 4 O O5B FAD . . . W 2 -25.646 170.187 5.038 1 39.77 ? O5B FAD 500 D 1 
HETATM 5 C C5B FAD . . . W 2 -26.65 171.029 4.529 1 39.44 ? C5B FAD 500 D 1 
HETATM 6 C C4B FAD . . . W 2 -27.217 170.429 3.255 1 38.68 ? C4B FAD 500 D 1 
HETATM 7 O O4B FAD . . . W 2 -28.154 171.332 2.709 1 38.15 ? O4B FAD 500 D 1 
HETATM 8 C C3B FAD . . . W 2 -26.117 170.273 2.225 1 38.16 ? C3B FAD 500 D 1 
HETATM 9 O O3B FAD . . . W 2 -26.106 168.97 1.691 1 37.61 ? O3B FAD 500 D 1 
HETATM 10 C C2B FAD . . . W 2 -26.464 171.249 1.138 1 38.55 ? C2B FAD 500 D 1 
HETATM 11 O O2B FAD . . . W 2 -26.107 170.696 -0.094 1 38.06 ? O2B FAD 500 D 1 
HETATM 12 C C1B FAD . . . W 2 -27.956 171.387 1.324 1 39.12 ? C1B FAD 500 D 1 
HETATM 13 N N9A FAD . . . W 2 -28.485 172.644 0.801 1 39.55 ? N9A FAD 500 D 1 
HETATM 14 C C8A FAD . . . W 2 -28.184 173.911 1.202 1 39.95 ? C8A FAD 500 D 1 
HETATM 15 N N7A FAD . . . W 2 -28.908 174.778 0.446 1 40.56 ? N7A FAD 500 D 1 
HETATM 16 C C5A FAD . . . W 2 -29.661 174.08 -0.423 1 40.36 ? C5A FAD 500 D 1 
HETATM 17 C C6A FAD . . . W 2 -30.565 174.458 -1.404 1 39.45 ? C6A FAD 500 D 1 
HETATM 18 N N6A FAD . . . W 2 -30.894 175.717 -1.589 1 39.43 ? N6A FAD 500 D 1 
HETATM 19 N N1A FAD . . . W 2 -31.197 173.513 -2.146 1 39.26 ? N1A FAD 500 D 1 
HETATM 20 C C2A FAD . . . W 2 -30.913 172.184 -1.905 1 40.16 ? C2A FAD 500 D 1 
HETATM 21 N N3A FAD . . . W 2 -30.019 171.805 -0.928 1 38.82 ? N3A FAD 500 D 1 
HETATM 22 C C4A FAD . . . W 2 -29.401 172.74 -0.202 1 39.88 ? C4A FAD 500 D 1 
HETATM 23 N N1 FAD . . . W 2 -18.916 168.913 13.205 1 46.24 ? N1 FAD 500 D 1 
HETATM 24 C C2 FAD . . . W 2 -18.407 167.933 14.013 1 46.07 ? C2 FAD 500 D 1 
HETATM 25 O O2 FAD . . . W 2 -19.119 167.425 14.856 1 46.15 ? O2 FAD 500 D 1 
HETATM 26 N N3 FAD . . . W 2 -17.109 167.524 13.879 1 46.18 ? N3 FAD 500 D 1 
HETATM 27 C C4 FAD . . . W 2 -16.311 168.104 12.924 1 46.03 ? C4 FAD 500 D 1 
HETATM 28 O O4 FAD . . . W 2 -15.153 167.738 12.793 1 46.14 ? O4 FAD 500 D 1 
HETATM 29 C C4X FAD . . . W 2 -16.799 169.099 12.107 1 46.09 ? C4X FAD 500 D 1 
HETATM 30 N N5 FAD . . . W 2 -15.997 169.68 11.146 1 46.35 ? N5 FAD 500 D 1 
HETATM 31 C C5X FAD . . . W 2 -16.474 170.67 10.324 1 46.04 ? C5X FAD 500 D 1 
HETATM 32 C C6 FAD . . . W 2 -15.621 171.232 9.386 1 45.94 ? C6 FAD 500 D 1 
HETATM 33 C C7 FAD . . . W 2 -16.083 172.236 8.55 1 46.34 ? C7 FAD 500 D 1 
HETATM 34 C C7M FAD . . . W 2 -15.173 172.831 7.509 1 46.18 ? C7M FAD 500 D 1 
HETATM 35 C C8 FAD . . . W 2 -17.402 172.67 8.673 1 46.07 ? C8 FAD 500 D 1 
HETATM 36 C C8M FAD . . . W 2 -17.935 173.751 7.785 1 46.07 ? C8M FAD 500 D 1 
HETATM 37 C C9 FAD . . . W 2 -18.248 172.096 9.618 1 45.96 ? C9 FAD 500 D 1 
HETATM 38 C C9A FAD . . . W 2 -17.794 171.085 10.456 1 46 ? C9A FAD 500 D 1 
HETATM 39 N N10 FAD . . . W 2 -18.61 170.491 11.421 1 46.24 ? N10 FAD 500 D 1 
HETATM 40 C C10 FAD . . . W 2 -18.108 169.503 12.246 1 46.24 ? C10 FAD 500 D 1 
HETATM 41 C C1' FAD . . . W 2 -19.942 171.043 11.846 1 46.96 ? C1' FAD 500 D 1 
HETATM 42 C C2' FAD . . . W 2 -21.055 170.735 10.86 1 46.44 ? C2' FAD 500 D 1 
HETATM 43 O O2' FAD . . . W 2 -21.933 171.824 10.973 1 46.59 ? O2' FAD 500 D 1 
HETATM 44 C C3' FAD . . . W 2 -21.811 169.449 11.197 1 46.55 ? C3' FAD 500 D 1 
HETATM 45 O O3' FAD . . . W 2 -20.917 168.371 11.416 1 48.23 ? O3' FAD 500 D 1 
HETATM 46 C C4' FAD . . . W 2 -22.779 169.005 10.101 1 44.52 ? C4' FAD 500 D 1 
HETATM 47 O O4' FAD . . . W 2 -22.128 169.061 8.854 1 43.3 ? O4' FAD 500 D 1 
HETATM 48 C C5' FAD . . . W 2 -24.054 169.831 10.073 1 42.69 ? C5' FAD 500 D 1 
HETATM 49 O O5' FAD . . . W 2 -24.808 169.256 9.058 1 42.19 ? O5' FAD 500 D 1 
HETATM 50 P P FAD . . . W 2 -26.137 169.897 8.47 1 37.84 ? P FAD 500 D 1 
HETATM 51 O O1P FAD . . . W 2 -26.95 168.846 7.767 1 40.47 ? O1P FAD 500 D 1 
HETATM 52 O O2P FAD . . . W 2 -26.97 170.489 9.566 1 41.27 ? O2P FAD 500 D 1 
HETATM 53 O O3P FAD . . . W 2 -25.6 171.022 7.47 1 38.48 ? O3P FAD 500 D 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    20 
_model_server_stats.query_time_ms           279 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           53 
#