data_2VQI # _model_server_result.job_id C3HUqVvZEOUOc7cKfZ80uA _model_server_result.datetime_utc '2024-11-27 01:18:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2vqi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1637}' # _entry.id 2VQI # _exptl.entry_id 2VQI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 306.438 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 128.2 _cell.angle_gamma 90 _cell.entry_id 2VQI _cell.length_a 166.5 _cell.length_b 101.9 _cell.length_c 113.7 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2VQI _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,G 1 1 A,C,G 1 2 B,D,E,F,H 2 1 B,D,E,F,H 2 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LEU 17 A LEU 146 1_555 A N MSE 18 A MSE 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale2 A C MSE 18 A MSE 147 1_555 A N LEU 19 A LEU 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale3 A C MSE 123 A MSE 252 1_555 A N LEU 124 A LEU 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale4 A C SER 157 A SER 286 1_555 A N MSE 158 A MSE 287 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale5 A C MSE 158 A MSE 287 1_555 A N VAL 159 A VAL 288 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale6 A C TYR 319 A TYR 448 1_555 A N MSE 320 A MSE 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale7 A C MSE 320 A MSE 449 1_555 A N THR 321 A THR 450 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale8 A C THR 321 A THR 450 1_555 A N MSE 322 A MSE 451 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale9 A C MSE 322 A MSE 451 1_555 A N GLU 323 A GLU 452 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale10 A C GLU 340 A GLU 469 1_555 A N MSE 341 A MSE 470 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale11 A C MSE 341 A MSE 470 1_555 A N TYR 342 A TYR 471 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale12 A C SER 428 A SER 557 1_555 A N MSE 429 A MSE 558 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale13 A C MSE 429 A MSE 558 1_555 A N SER 430 A SER 559 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale14 A C ASN 436 A ASN 565 1_555 A N MSE 437 A MSE 566 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale15 A C MSE 437 A MSE 566 1_555 A N ALA 438 A ALA 567 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale16 B C LEU 17 B LEU 146 1_555 B N MSE 18 B MSE 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale17 B C MSE 18 B MSE 147 1_555 B N LEU 19 B LEU 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale18 B C MSE 123 B MSE 252 1_555 B N LEU 124 B LEU 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale19 B C SER 157 B SER 286 1_555 B N MSE 158 B MSE 287 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? covale ? covale20 B C MSE 158 B MSE 287 1_555 B N VAL 159 B VAL 288 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale21 B C TYR 319 B TYR 448 1_555 B N MSE 320 B MSE 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale22 B C MSE 320 B MSE 449 1_555 B N THR 321 B THR 450 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale23 B C THR 321 B THR 450 1_555 B N MSE 322 B MSE 451 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale24 B C MSE 322 B MSE 451 1_555 B N GLU 323 B GLU 452 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale25 B C GLU 340 B GLU 469 1_555 B N MSE 341 B MSE 470 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale26 B C MSE 341 B MSE 470 1_555 B N TYR 342 B TYR 471 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale27 B C SER 428 B SER 557 1_555 B N MSE 429 B MSE 558 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale28 B C MSE 429 B MSE 558 1_555 B N SER 430 B SER 559 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale29 B C ASN 436 B ASN 565 1_555 B N MSE 437 B MSE 566 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale30 B C MSE 437 B MSE 566 1_555 B N ALA 438 B ALA 567 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? # _chem_comp.formula 'C16 H34 O5' _chem_comp.formula_weight 306.438 _chem_comp.id C8E _chem_comp.mon_nstd_flag . _chem_comp.name (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 C8E sing 70 n n C1 H11 C8E sing 71 n n C1 H12 C8E sing 72 n n C1 H13 C8E sing 73 n n C2 C3 C8E sing 74 n n C2 H21 C8E sing 75 n n C2 H22 C8E sing 76 n n C3 C4 C8E sing 77 n n C3 H31 C8E sing 78 n n C3 H32 C8E sing 79 n n C4 C5 C8E sing 80 n n C4 H41 C8E sing 81 n n C4 H42 C8E sing 82 n n C5 C6 C8E sing 83 n n C5 H51 C8E sing 84 n n C5 H52 C8E sing 85 n n C6 C7 C8E sing 86 n n C6 H61 C8E sing 87 n n C6 H62 C8E sing 88 n n C7 C8 C8E sing 89 n n C7 H71 C8E sing 90 n n C7 H72 C8E sing 91 n n C8 O9 C8E sing 92 n n C8 H81 C8E sing 93 n n C8 H82 C8E sing 94 n n O9 C10 C8E sing 95 n n C10 C11 C8E sing 96 n n C10 H101 C8E sing 97 n n C10 H102 C8E sing 98 n n C11 O12 C8E sing 99 n n C11 H111 C8E sing 100 n n C11 H112 C8E sing 101 n n O12 C13 C8E sing 102 n n C13 C14 C8E sing 103 n n C13 H131 C8E sing 104 n n C13 H132 C8E sing 105 n n C14 O15 C8E sing 106 n n C14 H141 C8E sing 107 n n C14 H142 C8E sing 108 n n O15 C16 C8E sing 109 n n C16 C17 C8E sing 110 n n C16 H161 C8E sing 111 n n C16 H162 C8E sing 112 n n C17 O18 C8E sing 113 n n C17 H171 C8E sing 114 n n C17 H172 C8E sing 115 n n O18 C19 C8E sing 116 n n C19 C20 C8E sing 117 n n C19 H191 C8E sing 118 n n C19 H192 C8E sing 119 n n C20 O21 C8E sing 120 n n C20 H201 C8E sing 121 n n C20 H202 C8E sing 122 n n O21 HO2 C8E sing 123 n n # _atom_sites.entry_id 2VQI _atom_sites.fract_transf_matrix[1][1] 0.006006 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004726 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009814 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011192 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 LDA A 1 1638 1638 LDA LDA . D 3 C8E B 1 1637 1637 C8E C8E . E 3 C8E B 1 1638 1638 C8E C8E . F 2 LDA B 1 1639 1639 LDA LDA . G 4 HOH A 1 2001 2001 HOH HOH . G 4 HOH A 2 2002 2002 HOH HOH . G 4 HOH A 3 2003 2003 HOH HOH . G 4 HOH A 4 2004 2004 HOH HOH . G 4 HOH A 5 2005 2005 HOH HOH . G 4 HOH A 6 2006 2006 HOH HOH . G 4 HOH A 7 2007 2007 HOH HOH . G 4 HOH A 8 2008 2008 HOH HOH . G 4 HOH A 9 2009 2009 HOH HOH . G 4 HOH A 10 2010 2010 HOH HOH . G 4 HOH A 11 2011 2011 HOH HOH . G 4 HOH A 12 2012 2012 HOH HOH . G 4 HOH A 13 2013 2013 HOH HOH . G 4 HOH A 14 2014 2014 HOH HOH . G 4 HOH A 15 2015 2015 HOH HOH . H 4 HOH B 1 2001 2001 HOH HOH . H 4 HOH B 2 2002 2002 HOH HOH . H 4 HOH B 3 2003 2003 HOH HOH . H 4 HOH B 4 2004 2004 HOH HOH . H 4 HOH B 5 2005 2005 HOH HOH . H 4 HOH B 6 2006 2006 HOH HOH . H 4 HOH B 7 2007 2007 HOH HOH . H 4 HOH B 8 2008 2008 HOH HOH . H 4 HOH B 9 2009 2009 HOH HOH . H 4 HOH B 10 2010 2010 HOH HOH . H 4 HOH B 11 2011 2011 HOH HOH . H 4 HOH B 12 2012 2012 HOH HOH . H 4 HOH B 13 2013 2013 HOH HOH . H 4 HOH B 14 2014 2014 HOH HOH . H 4 HOH B 15 2015 2015 HOH HOH . H 4 HOH B 16 2016 2016 HOH HOH . H 4 HOH B 17 2017 2017 HOH HOH . H 4 HOH B 18 2018 2018 HOH HOH . H 4 HOH B 19 2019 2019 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 C8E . . . D 3 5.37 66.724 -6.998 1 83.12 ? C1 C8E 1637 B 1 HETATM 2 C C2 C8E . . . D 3 5.784 65.259 -6.935 1 85.11 ? C2 C8E 1637 B 1 HETATM 3 C C3 C8E . . . D 3 6.566 64.858 -8.18 1 86.1 ? C3 C8E 1637 B 1 HETATM 4 C C4 C8E . . . D 3 6.475 63.356 -8.422 1 86.8 ? C4 C8E 1637 B 1 HETATM 5 C C5 C8E . . . D 3 7.316 62.945 -9.625 1 86.39 ? C5 C8E 1637 B 1 HETATM 6 C C6 C8E . . . D 3 6.594 61.897 -10.463 1 86.42 ? C6 C8E 1637 B 1 HETATM 7 C C7 C8E . . . D 3 7.437 61.482 -11.663 1 85.89 ? C7 C8E 1637 B 1 HETATM 8 C C8 C8E . . . D 3 7.293 59.991 -11.942 1 85.24 ? C8 C8E 1637 B 1 HETATM 9 O O9 C8E . . . D 3 7.809 59.7 -13.222 1 85.27 ? O9 C8E 1637 B 1 HETATM 10 C C10 C8E . . . D 3 8.429 58.434 -13.261 1 84.46 ? C10 C8E 1637 B 1 HETATM 11 C C11 C8E . . . D 3 9.39 58.376 -14.443 1 84.61 ? C11 C8E 1637 B 1 HETATM 12 O O12 C8E . . . D 3 9.653 59.684 -14.899 1 84.53 ? O12 C8E 1637 B 1 HETATM 13 C C13 C8E . . . D 3 9.91 60.569 -13.832 1 83.8 ? C13 C8E 1637 B 1 HETATM 14 C C14 C8E . . . D 3 11.252 61.256 -14.054 1 82.56 ? C14 C8E 1637 B 1 HETATM 15 O O15 C8E . . . D 3 11.049 62.641 -14.222 1 81.48 ? O15 C8E 1637 B 1 HETATM 16 C C16 C8E . . . D 3 11.801 63.154 -15.299 1 80.3 ? C16 C8E 1637 B 1 HETATM 17 C C17 C8E . . . D 3 11.314 64.559 -15.636 1 80.01 ? C17 C8E 1637 B 1 HETATM 18 O O18 C8E . . . D 3 11.625 65.431 -14.573 1 80.23 ? O18 C8E 1637 B 1 HETATM 19 C C19 C8E . . . D 3 11.514 66.784 -14.956 1 80.14 ? C19 C8E 1637 B 1 HETATM 20 C C20 C8E . . . D 3 10.852 67.576 -13.836 1 79.54 ? C20 C8E 1637 B 1 HETATM 21 O O21 C8E . . . D 3 10.869 68.949 -14.157 1 77.84 ? O21 C8E 1637 B 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 240 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 21 #