data_2VQI # _model_server_result.job_id fcECgSfJIcNMhk-JIndq2w _model_server_result.datetime_utc '2024-11-23 09:00:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2vqi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1639}' # _entry.id 2VQI # _exptl.entry_id 2VQI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 229.402 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'LAURYL DIMETHYLAMINE-N-OXIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 128.2 _cell.angle_gamma 90 _cell.entry_id 2VQI _cell.length_a 166.5 _cell.length_b 101.9 _cell.length_c 113.7 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2VQI _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,G 1 1 A,C,G 1 2 B,D,E,F,H 2 1 B,D,E,F,H 2 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LEU 17 A LEU 146 1_555 A N MSE 18 A MSE 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale2 A C MSE 18 A MSE 147 1_555 A N LEU 19 A LEU 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale3 A C MSE 123 A MSE 252 1_555 A N LEU 124 A LEU 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale4 A C SER 157 A SER 286 1_555 A N MSE 158 A MSE 287 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale5 A C MSE 158 A MSE 287 1_555 A N VAL 159 A VAL 288 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale6 A C TYR 319 A TYR 448 1_555 A N MSE 320 A MSE 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale7 A C MSE 320 A MSE 449 1_555 A N THR 321 A THR 450 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale8 A C THR 321 A THR 450 1_555 A N MSE 322 A MSE 451 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale9 A C MSE 322 A MSE 451 1_555 A N GLU 323 A GLU 452 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale10 A C GLU 340 A GLU 469 1_555 A N MSE 341 A MSE 470 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale11 A C MSE 341 A MSE 470 1_555 A N TYR 342 A TYR 471 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale12 A C SER 428 A SER 557 1_555 A N MSE 429 A MSE 558 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale13 A C MSE 429 A MSE 558 1_555 A N SER 430 A SER 559 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale14 A C ASN 436 A ASN 565 1_555 A N MSE 437 A MSE 566 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale15 A C MSE 437 A MSE 566 1_555 A N ALA 438 A ALA 567 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale16 B C LEU 17 B LEU 146 1_555 B N MSE 18 B MSE 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale17 B C MSE 18 B MSE 147 1_555 B N LEU 19 B LEU 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale18 B C MSE 123 B MSE 252 1_555 B N LEU 124 B LEU 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale19 B C SER 157 B SER 286 1_555 B N MSE 158 B MSE 287 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? covale ? covale20 B C MSE 158 B MSE 287 1_555 B N VAL 159 B VAL 288 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale21 B C TYR 319 B TYR 448 1_555 B N MSE 320 B MSE 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale22 B C MSE 320 B MSE 449 1_555 B N THR 321 B THR 450 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale23 B C THR 321 B THR 450 1_555 B N MSE 322 B MSE 451 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale24 B C MSE 322 B MSE 451 1_555 B N GLU 323 B GLU 452 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale25 B C GLU 340 B GLU 469 1_555 B N MSE 341 B MSE 470 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale26 B C MSE 341 B MSE 470 1_555 B N TYR 342 B TYR 471 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale27 B C SER 428 B SER 557 1_555 B N MSE 429 B MSE 558 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale28 B C MSE 429 B MSE 558 1_555 B N SER 430 B SER 559 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale29 B C ASN 436 B ASN 565 1_555 B N MSE 437 B MSE 566 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale30 B C MSE 437 B MSE 566 1_555 B N ALA 438 B ALA 567 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? # _chem_comp.formula 'C14 H31 N O' _chem_comp.formula_weight 229.402 _chem_comp.id LDA _chem_comp.mon_nstd_flag . _chem_comp.name 'LAURYL DIMETHYLAMINE-N-OXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 O1 LDA sing 214 n n N1 CM1 LDA sing 215 n n N1 CM2 LDA sing 216 n n N1 C1 LDA sing 217 n n CM1 HM11 LDA sing 218 n n CM1 HM12 LDA sing 219 n n CM1 HM13 LDA sing 220 n n CM2 HM21 LDA sing 221 n n CM2 HM22 LDA sing 222 n n CM2 HM23 LDA sing 223 n n C1 C2 LDA sing 224 n n C1 H11 LDA sing 225 n n C1 H12 LDA sing 226 n n C2 C3 LDA sing 227 n n C2 H21 LDA sing 228 n n C2 H22 LDA sing 229 n n C3 C4 LDA sing 230 n n C3 H31 LDA sing 231 n n C3 H32 LDA sing 232 n n C4 C5 LDA sing 233 n n C4 H41 LDA sing 234 n n C4 H42 LDA sing 235 n n C5 C6 LDA sing 236 n n C5 H51 LDA sing 237 n n C5 H52 LDA sing 238 n n C6 C7 LDA sing 239 n n C6 H61 LDA sing 240 n n C6 H62 LDA sing 241 n n C7 C8 LDA sing 242 n n C7 H71 LDA sing 243 n n C7 H72 LDA sing 244 n n C8 C9 LDA sing 245 n n C8 H81 LDA sing 246 n n C8 H82 LDA sing 247 n n C9 C10 LDA sing 248 n n C9 H91 LDA sing 249 n n C9 H92 LDA sing 250 n n C10 C11 LDA sing 251 n n C10 H101 LDA sing 252 n n C10 H102 LDA sing 253 n n C11 C12 LDA sing 254 n n C11 H111 LDA sing 255 n n C11 H112 LDA sing 256 n n C12 H121 LDA sing 257 n n C12 H122 LDA sing 258 n n C12 H123 LDA sing 259 n n # _atom_sites.entry_id 2VQI _atom_sites.fract_transf_matrix[1][1] 0.006006 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004726 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009814 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011192 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 LDA A 1 1638 1638 LDA LDA . D 3 C8E B 1 1637 1637 C8E C8E . E 3 C8E B 1 1638 1638 C8E C8E . F 2 LDA B 1 1639 1639 LDA LDA . G 4 HOH A 1 2001 2001 HOH HOH . G 4 HOH A 2 2002 2002 HOH HOH . G 4 HOH A 3 2003 2003 HOH HOH . G 4 HOH A 4 2004 2004 HOH HOH . G 4 HOH A 5 2005 2005 HOH HOH . G 4 HOH A 6 2006 2006 HOH HOH . G 4 HOH A 7 2007 2007 HOH HOH . G 4 HOH A 8 2008 2008 HOH HOH . G 4 HOH A 9 2009 2009 HOH HOH . G 4 HOH A 10 2010 2010 HOH HOH . G 4 HOH A 11 2011 2011 HOH HOH . G 4 HOH A 12 2012 2012 HOH HOH . G 4 HOH A 13 2013 2013 HOH HOH . G 4 HOH A 14 2014 2014 HOH HOH . G 4 HOH A 15 2015 2015 HOH HOH . H 4 HOH B 1 2001 2001 HOH HOH . H 4 HOH B 2 2002 2002 HOH HOH . H 4 HOH B 3 2003 2003 HOH HOH . H 4 HOH B 4 2004 2004 HOH HOH . H 4 HOH B 5 2005 2005 HOH HOH . H 4 HOH B 6 2006 2006 HOH HOH . H 4 HOH B 7 2007 2007 HOH HOH . H 4 HOH B 8 2008 2008 HOH HOH . H 4 HOH B 9 2009 2009 HOH HOH . H 4 HOH B 10 2010 2010 HOH HOH . H 4 HOH B 11 2011 2011 HOH HOH . H 4 HOH B 12 2012 2012 HOH HOH . H 4 HOH B 13 2013 2013 HOH HOH . H 4 HOH B 14 2014 2014 HOH HOH . H 4 HOH B 15 2015 2015 HOH HOH . H 4 HOH B 16 2016 2016 HOH HOH . H 4 HOH B 17 2017 2017 HOH HOH . H 4 HOH B 18 2018 2018 HOH HOH . H 4 HOH B 19 2019 2019 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 LDA . . . F 2 -43.558 50.929 5.175 1 69.48 ? N1 LDA 1639 B 1 HETATM 2 O O1 LDA . . . F 2 -42.54 51.223 4.513 1 70.54 ? O1 LDA 1639 B 1 HETATM 3 C CM1 LDA . . . F 2 -44.578 50.365 4.28 1 69.91 ? CM1 LDA 1639 B 1 HETATM 4 C CM2 LDA . . . F 2 -43.206 49.939 6.202 1 70.28 ? CM2 LDA 1639 B 1 HETATM 5 C C1 LDA . . . F 2 -44.082 52.122 5.813 1 68.08 ? C1 LDA 1639 B 1 HETATM 6 C C2 LDA . . . F 2 -42.902 52.709 6.578 1 66.54 ? C2 LDA 1639 B 1 HETATM 7 C C3 LDA . . . F 2 -43.147 54.175 6.918 1 63.71 ? C3 LDA 1639 B 1 HETATM 8 C C4 LDA . . . F 2 -42.116 55.071 6.242 1 60.83 ? C4 LDA 1639 B 1 HETATM 9 C C5 LDA . . . F 2 -42.793 56.217 5.499 1 57.53 ? C5 LDA 1639 B 1 HETATM 10 C C6 LDA . . . F 2 -42.049 56.549 4.212 1 56.29 ? C6 LDA 1639 B 1 HETATM 11 C C7 LDA . . . F 2 -42.877 57.471 3.324 1 57.52 ? C7 LDA 1639 B 1 HETATM 12 C C8 LDA . . . F 2 -42.014 58.105 2.24 1 55.69 ? C8 LDA 1639 B 1 HETATM 13 C C9 LDA . . . F 2 -42.271 59.604 2.144 1 57.03 ? C9 LDA 1639 B 1 HETATM 14 C C10 LDA . . . F 2 -43.58 59.888 1.418 1 56.21 ? C10 LDA 1639 B 1 HETATM 15 C C11 LDA . . . F 2 -44.116 61.269 1.778 1 55.52 ? C11 LDA 1639 B 1 HETATM 16 C C12 LDA . . . F 2 -45.233 61.686 0.829 1 54.65 ? C12 LDA 1639 B 1 # _model_server_stats.io_time_ms 65 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 16 #