data_2VRZ # _model_server_result.job_id SLuuw18CWvlkC2pv8rstEQ _model_server_result.datetime_utc '2024-11-26 02:56:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2vrz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":1090}' # _entry.id 2VRZ # _exptl.entry_id 2VRZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 105.43 _cell.angle_gamma 90 _cell.entry_id 2VRZ _cell.length_a 46.232 _cell.length_b 27.636 _cell.length_c 64.394 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2VRZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C HIS 2 A HIS 0 1_555 A N MSE 3 A MSE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale2 A C MSE 3 A MSE 1 1_555 A N ALA 4 A ALA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale3 A C ALA 4 A ALA 2 1_555 A N MSE 5 A MSE 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale4 A C MSE 5 A MSE 3 1_555 A N ILE 6 A ILE 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale5 A C LYS 7 A LYS 5 1_555 A N MSE 8 A MSE 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale6 A C MSE 8 A MSE 6 1_555 A N SER 9 A SER 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale7 B C LYS 7 B LYS 5 1_555 B N MSE 8 B MSE 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale8 B C MSE 8 B MSE 6 1_555 B N SER 9 B SER 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? metalc ? metalc1 A OE2 GLU 11 A GLU 9 1_555 D ZN ZN . A ZN 1098 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? metalc ? metalc2 A OE2 GLU 12 A GLU 10 1_555 C ZN ZN . A ZN 1097 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.87 ? metalc ? metalc3 A OD1 ASP 25 A ASP 23 1_555 E ZN ZN . A ZN 1099 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.449 ? metalc ? metalc4 A OD2 ASP 25 A ASP 23 1_555 E ZN ZN . A ZN 1099 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.143 ? metalc ? metalc5 A OE2 GLU 40 A GLU 38 1_555 I ZN ZN . B ZN 1090 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? metalc ? metalc6 A OE1 GLU 40 A GLU 38 1_555 I ZN ZN . B ZN 1090 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.495 ? metalc ? metalc7 A OE1 GLU 55 A GLU 53 1_555 F ZN ZN . A ZN 1100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? metalc ? metalc8 A OE2 GLU 55 A GLU 53 1_555 F ZN ZN . A ZN 1100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? metalc ? metalc9 A OE1 GLU 72 A GLU 70 1_555 G ZN ZN . A ZN 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.898 ? metalc ? metalc10 A NZ LYS 75 A LYS 73 1_555 G ZN ZN . A ZN 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.781 ? metalc ? metalc11 A OD1 ASP 83 A ASP 81 1_655 H ZN ZN . B ZN 1089 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc12 A OE1 GLU 87 A GLU 85 1_665 F ZN ZN . A ZN 1100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? metalc ? metalc13 A OE2 GLU 87 A GLU 85 1_655 H ZN ZN . B ZN 1089 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? metalc ? metalc14 C ZN ZN . A ZN 1097 1_555 J O HOH . A HOH 2064 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? metalc ? metalc15 C ZN ZN . A ZN 1097 1_555 B OE2 GLU 40 B GLU 38 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.889 ? metalc ? metalc16 D ZN ZN . A ZN 1098 1_555 J O HOH . A HOH 2065 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.953 ? metalc ? metalc17 E ZN ZN . A ZN 1099 1_555 J O HOH . A HOH 2066 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.153 ? metalc ? metalc18 E ZN ZN . A ZN 1099 1_555 J O HOH . A HOH 2067 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.897 ? metalc ? metalc19 E ZN ZN . A ZN 1099 1_555 B OE1 GLU 87 B GLU 85 1_455 ? ? ? ? B ? ? ? ? ? ? ? 1.997 ? metalc ? metalc20 E ZN ZN . A ZN 1099 1_555 B OE2 GLU 87 B GLU 85 1_455 ? ? ? ? A ? ? ? ? ? ? ? 2.135 ? metalc ? metalc21 F ZN ZN . A ZN 1100 1_555 J O HOH . A HOH 2068 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.871 ? metalc ? metalc22 F ZN ZN . A ZN 1100 1_555 B OD2 ASP 25 B ASP 23 1_565 ? ? ? ? ? ? ? ? ? ? ? ? 2.438 ? metalc ? metalc23 F ZN ZN . A ZN 1100 1_555 B OD1 ASP 25 B ASP 23 1_565 ? ? ? ? ? ? ? ? ? ? ? ? 2.372 ? metalc ? metalc24 G ZN ZN . A ZN 1101 1_555 B OD2 ASP 83 B ASP 81 1_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? metalc ? metalc25 G ZN ZN . A ZN 1101 1_555 B OE2 GLU 87 B GLU 85 1_455 ? ? ? ? B ? ? ? ? ? ? ? 1.994 ? metalc ? metalc26 G ZN ZN . A ZN 1101 1_555 B OE2 GLU 87 B GLU 85 1_455 ? ? ? ? A ? ? ? ? ? ? ? 2.503 ? metalc ? metalc27 B OE2 GLU 12 B GLU 10 1_555 I ZN ZN . B ZN 1090 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? metalc ? metalc28 B OE1 GLU 72 B GLU 70 1_555 H ZN ZN . B ZN 1089 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.905 ? metalc ? metalc29 B NZ LYS 75 B LYS 73 1_555 H ZN ZN . B ZN 1089 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2VRZ _atom_sites.fract_transf_matrix[1][1] 0.02163 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00597 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.036185 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01611 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 1097 1097 ZN ZN . D 2 ZN A 1 1098 1098 ZN ZN . E 2 ZN A 1 1099 1099 ZN ZN . F 2 ZN A 1 1100 1100 ZN ZN . G 2 ZN A 1 1101 1101 ZN ZN . H 2 ZN B 1 1089 1089 ZN ZN . I 2 ZN B 1 1090 1090 ZN ZN . J 3 HOH A 1 2001 2001 HOH HOH . J 3 HOH A 2 2002 2002 HOH HOH . J 3 HOH A 3 2003 2003 HOH HOH . J 3 HOH A 4 2004 2004 HOH HOH . J 3 HOH A 5 2005 2005 HOH HOH . J 3 HOH A 6 2006 2006 HOH HOH . J 3 HOH A 7 2007 2007 HOH HOH . J 3 HOH A 8 2008 2008 HOH HOH . J 3 HOH A 9 2009 2009 HOH HOH . J 3 HOH A 10 2010 2010 HOH HOH . J 3 HOH A 11 2011 2011 HOH HOH . J 3 HOH A 12 2012 2012 HOH HOH . J 3 HOH A 13 2013 2013 HOH HOH . J 3 HOH A 14 2014 2014 HOH HOH . J 3 HOH A 15 2015 2015 HOH HOH . J 3 HOH A 16 2016 2016 HOH HOH . J 3 HOH A 17 2017 2017 HOH HOH . J 3 HOH A 18 2018 2018 HOH HOH . J 3 HOH A 19 2019 2019 HOH HOH . J 3 HOH A 20 2020 2020 HOH HOH . J 3 HOH A 21 2021 2021 HOH HOH . J 3 HOH A 22 2022 2022 HOH HOH . J 3 HOH A 23 2023 2023 HOH HOH . J 3 HOH A 24 2024 2024 HOH HOH . J 3 HOH A 25 2025 2025 HOH HOH . J 3 HOH A 26 2026 2026 HOH HOH . J 3 HOH A 27 2027 2027 HOH HOH . J 3 HOH A 28 2028 2028 HOH HOH . J 3 HOH A 29 2029 2029 HOH HOH . J 3 HOH A 30 2030 2030 HOH HOH . J 3 HOH A 31 2031 2031 HOH HOH . J 3 HOH A 32 2032 2032 HOH HOH . J 3 HOH A 33 2033 2033 HOH HOH . J 3 HOH A 34 2034 2034 HOH HOH . J 3 HOH A 35 2035 2035 HOH HOH . J 3 HOH A 36 2036 2036 HOH HOH . J 3 HOH A 37 2037 2037 HOH HOH . J 3 HOH A 38 2038 2038 HOH HOH . J 3 HOH A 39 2039 2039 HOH HOH . J 3 HOH A 40 2040 2040 HOH HOH . J 3 HOH A 41 2041 2041 HOH HOH . J 3 HOH A 42 2042 2042 HOH HOH . J 3 HOH A 43 2043 2043 HOH HOH . J 3 HOH A 44 2044 2044 HOH HOH . J 3 HOH A 45 2045 2045 HOH HOH . J 3 HOH A 46 2046 2046 HOH HOH . J 3 HOH A 47 2047 2047 HOH HOH . J 3 HOH A 48 2048 2048 HOH HOH . J 3 HOH A 49 2049 2049 HOH HOH . J 3 HOH A 50 2050 2050 HOH HOH . J 3 HOH A 51 2051 2051 HOH HOH . J 3 HOH A 52 2052 2052 HOH HOH . J 3 HOH A 53 2053 2053 HOH HOH . J 3 HOH A 54 2054 2054 HOH HOH . J 3 HOH A 55 2055 2055 HOH HOH . J 3 HOH A 56 2056 2056 HOH HOH . J 3 HOH A 57 2057 2057 HOH HOH . J 3 HOH A 58 2058 2058 HOH HOH . J 3 HOH A 59 2059 2059 HOH HOH . J 3 HOH A 60 2060 2060 HOH HOH . J 3 HOH A 61 2061 2061 HOH HOH . J 3 HOH A 62 2062 2062 HOH HOH . J 3 HOH A 63 2063 2063 HOH HOH . J 3 HOH A 64 2064 2064 HOH HOH . J 3 HOH A 65 2065 2065 HOH HOH . J 3 HOH A 66 2066 2066 HOH HOH . J 3 HOH A 67 2067 2067 HOH HOH . J 3 HOH A 68 2068 2068 HOH HOH . K 3 HOH B 1 2001 2001 HOH HOH . K 3 HOH B 2 2002 2002 HOH HOH . K 3 HOH B 3 2003 2003 HOH HOH . K 3 HOH B 4 2004 2004 HOH HOH . K 3 HOH B 5 2005 2005 HOH HOH . K 3 HOH B 6 2006 2006 HOH HOH . K 3 HOH B 7 2007 2007 HOH HOH . K 3 HOH B 8 2008 2008 HOH HOH . K 3 HOH B 9 2009 2009 HOH HOH . K 3 HOH B 10 2010 2010 HOH HOH . K 3 HOH B 11 2011 2011 HOH HOH . K 3 HOH B 12 2012 2012 HOH HOH . K 3 HOH B 13 2013 2013 HOH HOH . K 3 HOH B 14 2014 2014 HOH HOH . K 3 HOH B 15 2015 2015 HOH HOH . K 3 HOH B 16 2016 2016 HOH HOH . K 3 HOH B 17 2017 2017 HOH HOH . K 3 HOH B 18 2018 2018 HOH HOH . K 3 HOH B 19 2019 2019 HOH HOH . K 3 HOH B 20 2020 2020 HOH HOH . K 3 HOH B 21 2021 2021 HOH HOH . K 3 HOH B 22 2022 2022 HOH HOH . K 3 HOH B 23 2023 2023 HOH HOH . K 3 HOH B 24 2024 2024 HOH HOH . K 3 HOH B 25 2025 2025 HOH HOH . K 3 HOH B 26 2026 2026 HOH HOH . K 3 HOH B 27 2027 2027 HOH HOH . K 3 HOH B 28 2028 2028 HOH HOH . K 3 HOH B 29 2029 2029 HOH HOH . K 3 HOH B 30 2030 2030 HOH HOH . K 3 HOH B 31 2031 2031 HOH HOH . K 3 HOH B 32 2032 2032 HOH HOH . K 3 HOH B 33 2033 2033 HOH HOH . K 3 HOH B 34 2034 2034 HOH HOH . K 3 HOH B 35 2035 2035 HOH HOH . K 3 HOH B 36 2036 2036 HOH HOH . K 3 HOH B 37 2037 2037 HOH HOH . K 3 HOH B 38 2038 2038 HOH HOH . K 3 HOH B 39 2039 2039 HOH HOH . K 3 HOH B 40 2040 2040 HOH HOH . K 3 HOH B 41 2041 2041 HOH HOH . K 3 HOH B 42 2042 2042 HOH HOH . K 3 HOH B 43 2043 2043 HOH HOH . K 3 HOH B 44 2044 2044 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id I _atom_site.label_entity_id 2 _atom_site.Cartn_x -0.302 _atom_site.Cartn_y 9.507 _atom_site.Cartn_z 2.52 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 35.61 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 1090 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 55 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 246 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #