data_2VT4 # _model_server_result.job_id 4IVE-kkiIMP3dAB0CI_fVg _model_server_result.datetime_utc '2024-11-01 11:31:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2vt4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":400}' # _entry.id 2VT4 # _exptl.entry_id 2VT4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 287.357 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-{[(2S)-3-(tert-butylamino)-2-hydroxypropyl]oxy}-3H-indole-2-carbonitrile _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 67.6 _cell.angle_beta 73.3 _cell.angle_gamma 85.8 _cell.entry_id 2VT4 _cell.length_a 55.5 _cell.length_b 86.8 _cell.length_c 95.5 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2VT4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS dimeric 2 software_defined_assembly 1 PQS dimeric 2 software_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 ? monomeric 1 author_defined_assembly 4 ? monomeric 1 author_defined_assembly 5 ? monomeric 1 author_defined_assembly 6 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,I,J,K,L,M,N,O,AA,BA 1 1 C,D,P,Q,R,S,T,U,V,W,X,Y,Z,CA,DA 2 1 A,E,F,G,H,I,J,AA 3 1 B,K,L,M,N,O,BA 4 1 C,P,Q,R,S,T,U,CA 5 1 D,V,W,X,Y,Z,DA 6 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 K N N ? 2 P N N ? 2 V N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 84 A CYS 114 1_555 A SG CYS 169 A CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf2 A SG CYS 162 A CYS 192 1_555 A SG CYS 168 A CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? disulf ? disulf3 B SG CYS 84 B CYS 114 1_555 B SG CYS 169 B CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf4 B SG CYS 162 B CYS 192 1_555 B SG CYS 168 B CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? disulf ? disulf5 C SG CYS 84 C CYS 114 1_555 C SG CYS 169 C CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf6 C SG CYS 162 C CYS 192 1_555 C SG CYS 168 C CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? disulf ? disulf7 D SG CYS 84 D CYS 114 1_555 D SG CYS 169 D CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf8 D SG CYS 162 D CYS 192 1_555 D SG CYS 168 D CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? metalc ? metalc1 A O CYS 162 A CYS 192 1_555 F NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.472 ? metalc ? metalc2 A O ASP 165 A ASP 195 1_555 F NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? metalc ? metalc3 A O CYS 168 A CYS 198 1_555 F NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc4 F NA NA . A NA 401 1_555 AA O HOH . A HOH 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.474 ? metalc ? metalc5 F NA NA . A NA 401 1_555 AA O HOH . A HOH 2006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.465 ? metalc ? metalc6 B O ASP 165 B ASP 195 1_555 L NA NA . B NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.453 ? metalc ? metalc7 B O CYS 168 B CYS 198 1_555 L NA NA . B NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.477 ? metalc ? metalc8 C O ASP 165 C ASP 195 1_555 Q NA NA . C NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.437 ? metalc ? metalc9 C O CYS 168 C CYS 198 1_555 Q NA NA . C NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.474 ? metalc ? metalc10 Q NA NA . C NA 401 1_555 CA O HOH . C HOH 2005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.578 ? metalc ? metalc11 D O CYS 162 D CYS 192 1_555 W NA NA . D NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.46 ? metalc ? metalc12 D O ASP 165 D ASP 195 1_555 W NA NA . D NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? metalc ? metalc13 D O CYS 168 D CYS 198 1_555 W NA NA . D NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc14 W NA NA . D NA 401 1_555 DA O HOH . D HOH 2004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? # _chem_comp.formula 'C16 H21 N3 O2' _chem_comp.formula_weight 287.357 _chem_comp.id P32 _chem_comp.mon_nstd_flag . _chem_comp.name 4-{[(2S)-3-(tert-butylamino)-2-hydroxypropyl]oxy}-3H-indole-2-carbonitrile _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C16 N3 P32 trip 268 n n C16 C1 P32 sing 269 n n N1 C1 P32 doub 270 n n N1 C8 P32 sing 271 n n C1 C2 P32 sing 272 n n C2 C3 P32 sing 273 n n C3 C4 P32 sing 274 n y C3 C8 P32 doub 275 n y C4 C5 P32 doub 276 n y C4 O1 P32 sing 277 n n C5 C6 P32 sing 278 n y C6 C7 P32 doub 279 n y C7 C8 P32 sing 280 n y O1 C9 P32 sing 281 n n C9 C10 P32 sing 282 n n C10 O2 P32 sing 283 n n C10 C11 P32 sing 284 n n C11 N2 P32 sing 285 n n N2 C12 P32 sing 286 n n C12 C13 P32 sing 287 n n C12 C14 P32 sing 288 n n C12 C15 P32 sing 289 n n C2 H2 P32 sing 290 n n C2 H1 P32 sing 291 n n C5 H5 P32 sing 292 n n C6 H6 P32 sing 293 n n C7 H7 P32 sing 294 n n C9 H9C1 P32 sing 295 n n C9 H9C2 P32 sing 296 n n C10 H10 P32 sing 297 n n O2 HA P32 sing 298 n n C11 H111 P32 sing 299 n n C11 H112 P32 sing 300 n n N2 HB P32 sing 301 n n C13 H131 P32 sing 302 n n C13 H132 P32 sing 303 n n C13 H133 P32 sing 304 n n C14 H141 P32 sing 305 n n C14 H142 P32 sing 306 n n C14 H143 P32 sing 307 n n C15 H151 P32 sing 308 n n C15 H152 P32 sing 309 n n C15 H153 P32 sing 310 n n # _atom_sites.entry_id 2VT4 _atom_sites.fract_transf_matrix[1][1] 0.018018 _atom_sites.fract_transf_matrix[1][2] -0.001323 _atom_sites.fract_transf_matrix[1][3] -0.005298 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011552 _atom_sites.fract_transf_matrix[2][3] -0.0047 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011803 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 P32 A 1 400 400 P32 P32 . F 3 NA A 1 401 401 NA NA . G 4 SOG A 1 402 402 SOG SOG . H 4 SOG A 1 403 403 SOG SOG . I 4 SOG A 1 405 405 SOG SOG . J 5 D10 A 1 406 406 D10 D10 . K 2 P32 B 1 400 400 P32 P32 . L 3 NA B 1 401 401 NA NA . M 4 SOG B 1 402 402 SOG SOG . N 4 SOG B 1 404 404 SOG SOG . O 4 SOG B 1 405 405 SOG SOG . P 2 P32 C 1 400 400 P32 P32 . Q 3 NA C 1 401 401 NA NA . R 4 SOG C 1 402 402 SOG SOG . S 4 SOG C 1 404 404 SOG SOG . T 4 SOG C 1 405 405 SOG SOG . U 5 D10 C 1 406 406 D10 D10 . V 2 P32 D 1 400 400 P32 P32 . W 3 NA D 1 401 401 NA NA . X 4 SOG D 1 402 402 SOG SOG . Y 4 SOG D 1 403 403 SOG SOG . Z 4 SOG D 1 405 405 SOG SOG . AA 6 HOH A 1 2001 2001 HOH HOH . AA 6 HOH A 2 2002 2002 HOH HOH . AA 6 HOH A 3 2003 2003 HOH HOH . AA 6 HOH A 4 2004 2004 HOH HOH . AA 6 HOH A 5 2005 2005 HOH HOH . AA 6 HOH A 6 2006 2006 HOH HOH . AA 6 HOH A 7 2007 2007 HOH HOH . AA 6 HOH A 8 2008 2008 HOH HOH . AA 6 HOH A 9 2009 2009 HOH HOH . BA 6 HOH B 1 2001 2001 HOH HOH . BA 6 HOH B 2 2002 2002 HOH HOH . BA 6 HOH B 3 2003 2003 HOH HOH . BA 6 HOH B 4 2004 2004 HOH HOH . BA 6 HOH B 5 2005 2005 HOH HOH . BA 6 HOH B 6 2006 2006 HOH HOH . BA 6 HOH B 7 2007 2007 HOH HOH . CA 6 HOH C 1 2001 2001 HOH HOH . CA 6 HOH C 2 2002 2002 HOH HOH . CA 6 HOH C 3 2003 2003 HOH HOH . CA 6 HOH C 4 2004 2004 HOH HOH . CA 6 HOH C 5 2005 2005 HOH HOH . CA 6 HOH C 6 2006 2006 HOH HOH . CA 6 HOH C 7 2007 2007 HOH HOH . DA 6 HOH D 1 2001 2001 HOH HOH . DA 6 HOH D 2 2002 2002 HOH HOH . DA 6 HOH D 3 2003 2003 HOH HOH . DA 6 HOH D 4 2004 2004 HOH HOH . DA 6 HOH D 5 2005 2005 HOH HOH . DA 6 HOH D 6 2006 2006 HOH HOH . DA 6 HOH D 7 2007 2007 HOH HOH . DA 6 HOH D 8 2008 2008 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O2 P32 . . . E 2 10.16 22.688 25.883 1 30.89 ? O2 P32 400 A 1 HETATM 2 C C10 P32 . . . E 2 9.426 21.987 24.916 1 26.04 ? C10 P32 400 A 1 HETATM 3 N N3 P32 . . . E 2 5.404 17.816 19.602 1 43.1 ? N3 P32 400 A 1 HETATM 4 C C11 P32 . . . E 2 8.623 22.922 23.982 1 20.24 ? C11 P32 400 A 1 HETATM 5 N N2 P32 . . . E 2 7.885 23.9 24.778 1 30.07 ? N2 P32 400 A 1 HETATM 6 C C12 P32 . . . E 2 6.907 24.66 23.974 1 35.43 ? C12 P32 400 A 1 HETATM 7 C C15 P32 . . . E 2 5.669 23.773 23.656 1 17.41 ? C15 P32 400 A 1 HETATM 8 C C13 P32 . . . E 2 7.56 25.183 22.668 1 20.16 ? C13 P32 400 A 1 HETATM 9 C C9 P32 . . . E 2 10.431 21.265 24.03 1 30.13 ? C9 P32 400 A 1 HETATM 10 O O1 P32 . . . E 2 9.785 20.061 23.666 1 38.26 ? O1 P32 400 A 1 HETATM 11 C C4 P32 . . . E 2 10.28 19.285 22.68 1 36.88 ? C4 P32 400 A 1 HETATM 12 C C5 P32 . . . E 2 11.634 19.006 22.628 1 31.26 ? C5 P32 400 A 1 HETATM 13 C C6 P32 . . . E 2 12.111 18.159 21.635 1 37.64 ? C6 P32 400 A 1 HETATM 14 C C7 P32 . . . E 2 11.247 17.587 20.699 1 39.28 ? C7 P32 400 A 1 HETATM 15 C C8 P32 . . . E 2 9.89 17.877 20.761 1 41.37 ? C8 P32 400 A 1 HETATM 16 C C3 P32 . . . E 2 9.413 18.73 21.753 1 38.36 ? C3 P32 400 A 1 HETATM 17 N N1 P32 . . . E 2 8.842 17.501 20.036 1 40.71 ? N1 P32 400 A 1 HETATM 18 C C1 P32 . . . E 2 7.775 18.076 20.562 1 39.1 ? C1 P32 400 A 1 HETATM 19 C C2 P32 . . . E 2 8.1 18.848 21.606 1 32.5 ? C2 P32 400 A 1 HETATM 20 C C16 P32 . . . E 2 6.425 17.908 20.096 1 44.37 ? C16 P32 400 A 1 HETATM 21 C C14 P32 . . . E 2 6.473 25.879 24.816 1 19.48 ? C14 P32 400 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 29 _model_server_stats.query_time_ms 327 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 21 #