data_2VT4
#
_model_server_result.job_id            52f4Z4Wq2d0ZLtYPsw1HNQ 
_model_server_result.datetime_utc      '2024-11-01 11:29:27' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2vt4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"V","auth_seq_id":400}' 
#
_entry.id    2VT4 
#
_exptl.entry_id    2VT4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              287.357 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            4-{[(2S)-3-(tert-butylamino)-2-hydroxypropyl]oxy}-3H-indole-2-carbonitrile 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         67.6 
_cell.angle_beta          73.3 
_cell.angle_gamma         85.8 
_cell.entry_id            2VT4 
_cell.length_a            55.5 
_cell.length_b            86.8 
_cell.length_c            95.5 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2VT4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PQS dimeric 2 software_defined_assembly 1 
PQS dimeric 2 software_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
? monomeric 1 author_defined_assembly 4 
? monomeric 1 author_defined_assembly 5 
? monomeric 1 author_defined_assembly 6 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,H,I,J,K,L,M,N,O,AA,BA 1 1 
C,D,P,Q,R,S,T,U,V,W,X,Y,Z,CA,DA 2 1 
A,E,F,G,H,I,J,AA 3 1 
B,K,L,M,N,O,BA 4 1 
C,P,Q,R,S,T,U,CA 5 1 
D,V,W,X,Y,Z,DA 6 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 K N N 
? 2 P N N 
? 2 V N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 84 A CYS 114 1_555 A SG CYS 169 A CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
disulf ? disulf2 A SG CYS 162 A CYS 192 1_555 A SG CYS 168 A CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? 
disulf ? disulf3 B SG CYS 84 B CYS 114 1_555 B SG CYS 169 B CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? 
disulf ? disulf4 B SG CYS 162 B CYS 192 1_555 B SG CYS 168 B CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? 
disulf ? disulf5 C SG CYS 84 C CYS 114 1_555 C SG CYS 169 C CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? 
disulf ? disulf6 C SG CYS 162 C CYS 192 1_555 C SG CYS 168 C CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? 
disulf ? disulf7 D SG CYS 84 D CYS 114 1_555 D SG CYS 169 D CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
disulf ? disulf8 D SG CYS 162 D CYS 192 1_555 D SG CYS 168 D CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? 
metalc ? metalc1 A O CYS 162 A CYS 192 1_555 F NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.472 ? 
metalc ? metalc2 A O ASP 165 A ASP 195 1_555 F NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? 
metalc ? metalc3 A O CYS 168 A CYS 198 1_555 F NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? 
metalc ? metalc4 F NA NA . A NA 401 1_555 AA O HOH . A HOH 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.474 ? 
metalc ? metalc5 F NA NA . A NA 401 1_555 AA O HOH . A HOH 2006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.465 ? 
metalc ? metalc6 B O ASP 165 B ASP 195 1_555 L NA NA . B NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.453 ? 
metalc ? metalc7 B O CYS 168 B CYS 198 1_555 L NA NA . B NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.477 ? 
metalc ? metalc8 C O ASP 165 C ASP 195 1_555 Q NA NA . C NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.437 ? 
metalc ? metalc9 C O CYS 168 C CYS 198 1_555 Q NA NA . C NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.474 ? 
metalc ? metalc10 Q NA NA . C NA 401 1_555 CA O HOH . C HOH 2005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.578 ? 
metalc ? metalc11 D O CYS 162 D CYS 192 1_555 W NA NA . D NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.46 ? 
metalc ? metalc12 D O ASP 165 D ASP 195 1_555 W NA NA . D NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? 
metalc ? metalc13 D O CYS 168 D CYS 198 1_555 W NA NA . D NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? 
metalc ? metalc14 W NA NA . D NA 401 1_555 DA O HOH . D HOH 2004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? 
#
_chem_comp.formula           'C16 H21 N3 O2' 
_chem_comp.formula_weight    287.357 
_chem_comp.id                P32 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              4-{[(2S)-3-(tert-butylamino)-2-hydroxypropyl]oxy}-3H-indole-2-carbonitrile 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C16 N3 P32 trip 268 n n 
C16 C1 P32 sing 269 n n 
N1 C1 P32 doub 270 n n 
N1 C8 P32 sing 271 n n 
C1 C2 P32 sing 272 n n 
C2 C3 P32 sing 273 n n 
C3 C4 P32 sing 274 n y 
C3 C8 P32 doub 275 n y 
C4 C5 P32 doub 276 n y 
C4 O1 P32 sing 277 n n 
C5 C6 P32 sing 278 n y 
C6 C7 P32 doub 279 n y 
C7 C8 P32 sing 280 n y 
O1 C9 P32 sing 281 n n 
C9 C10 P32 sing 282 n n 
C10 O2 P32 sing 283 n n 
C10 C11 P32 sing 284 n n 
C11 N2 P32 sing 285 n n 
N2 C12 P32 sing 286 n n 
C12 C13 P32 sing 287 n n 
C12 C14 P32 sing 288 n n 
C12 C15 P32 sing 289 n n 
C2 H2 P32 sing 290 n n 
C2 H1 P32 sing 291 n n 
C5 H5 P32 sing 292 n n 
C6 H6 P32 sing 293 n n 
C7 H7 P32 sing 294 n n 
C9 H9C1 P32 sing 295 n n 
C9 H9C2 P32 sing 296 n n 
C10 H10 P32 sing 297 n n 
O2 HA P32 sing 298 n n 
C11 H111 P32 sing 299 n n 
C11 H112 P32 sing 300 n n 
N2 HB P32 sing 301 n n 
C13 H131 P32 sing 302 n n 
C13 H132 P32 sing 303 n n 
C13 H133 P32 sing 304 n n 
C14 H141 P32 sing 305 n n 
C14 H142 P32 sing 306 n n 
C14 H143 P32 sing 307 n n 
C15 H151 P32 sing 308 n n 
C15 H152 P32 sing 309 n n 
C15 H153 P32 sing 310 n n 
#
_atom_sites.entry_id                     2VT4 
_atom_sites.fract_transf_matrix[1][1]    0.018018 
_atom_sites.fract_transf_matrix[1][2]    -0.001323 
_atom_sites.fract_transf_matrix[1][3]    -0.005298 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011552 
_atom_sites.fract_transf_matrix[2][3]    -0.0047 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011803 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 P32 A 1 400 400 P32 P32 . 
F 3 NA A 1 401 401 NA NA . 
G 4 SOG A 1 402 402 SOG SOG . 
H 4 SOG A 1 403 403 SOG SOG . 
I 4 SOG A 1 405 405 SOG SOG . 
J 5 D10 A 1 406 406 D10 D10 . 
K 2 P32 B 1 400 400 P32 P32 . 
L 3 NA B 1 401 401 NA NA . 
M 4 SOG B 1 402 402 SOG SOG . 
N 4 SOG B 1 404 404 SOG SOG . 
O 4 SOG B 1 405 405 SOG SOG . 
P 2 P32 C 1 400 400 P32 P32 . 
Q 3 NA C 1 401 401 NA NA . 
R 4 SOG C 1 402 402 SOG SOG . 
S 4 SOG C 1 404 404 SOG SOG . 
T 4 SOG C 1 405 405 SOG SOG . 
U 5 D10 C 1 406 406 D10 D10 . 
V 2 P32 D 1 400 400 P32 P32 . 
W 3 NA D 1 401 401 NA NA . 
X 4 SOG D 1 402 402 SOG SOG . 
Y 4 SOG D 1 403 403 SOG SOG . 
Z 4 SOG D 1 405 405 SOG SOG . 
AA 6 HOH A 1 2001 2001 HOH HOH . 
AA 6 HOH A 2 2002 2002 HOH HOH . 
AA 6 HOH A 3 2003 2003 HOH HOH . 
AA 6 HOH A 4 2004 2004 HOH HOH . 
AA 6 HOH A 5 2005 2005 HOH HOH . 
AA 6 HOH A 6 2006 2006 HOH HOH . 
AA 6 HOH A 7 2007 2007 HOH HOH . 
AA 6 HOH A 8 2008 2008 HOH HOH . 
AA 6 HOH A 9 2009 2009 HOH HOH . 
BA 6 HOH B 1 2001 2001 HOH HOH . 
BA 6 HOH B 2 2002 2002 HOH HOH . 
BA 6 HOH B 3 2003 2003 HOH HOH . 
BA 6 HOH B 4 2004 2004 HOH HOH . 
BA 6 HOH B 5 2005 2005 HOH HOH . 
BA 6 HOH B 6 2006 2006 HOH HOH . 
BA 6 HOH B 7 2007 2007 HOH HOH . 
CA 6 HOH C 1 2001 2001 HOH HOH . 
CA 6 HOH C 2 2002 2002 HOH HOH . 
CA 6 HOH C 3 2003 2003 HOH HOH . 
CA 6 HOH C 4 2004 2004 HOH HOH . 
CA 6 HOH C 5 2005 2005 HOH HOH . 
CA 6 HOH C 6 2006 2006 HOH HOH . 
CA 6 HOH C 7 2007 2007 HOH HOH . 
DA 6 HOH D 1 2001 2001 HOH HOH . 
DA 6 HOH D 2 2002 2002 HOH HOH . 
DA 6 HOH D 3 2003 2003 HOH HOH . 
DA 6 HOH D 4 2004 2004 HOH HOH . 
DA 6 HOH D 5 2005 2005 HOH HOH . 
DA 6 HOH D 6 2006 2006 HOH HOH . 
DA 6 HOH D 7 2007 2007 HOH HOH . 
DA 6 HOH D 8 2008 2008 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O2 P32 . . . V 2 38.243 15.465 -36.671 1 30.63 ? O2 P32 400 D 1 
HETATM 2 C C10 P32 . . . V 2 37.503 16.216 -35.731 1 30.14 ? C10 P32 400 D 1 
HETATM 3 N N3 P32 . . . V 2 33.457 20.592 -30.602 1 40.53 ? N3 P32 400 D 1 
HETATM 4 C C11 P32 . . . V 2 36.653 15.346 -34.786 1 20.67 ? C11 P32 400 D 1 
HETATM 5 N N2 P32 . . . V 2 35.922 14.346 -35.569 1 32.77 ? N2 P32 400 D 1 
HETATM 6 C C12 P32 . . . V 2 34.954 13.593 -34.741 1 37.17 ? C12 P32 400 D 1 
HETATM 7 C C15 P32 . . . V 2 33.711 14.485 -34.463 1 17.71 ? C15 P32 400 D 1 
HETATM 8 C C13 P32 . . . V 2 35.606 13.113 -33.41 1 20.54 ? C13 P32 400 D 1 
HETATM 9 C C9 P32 . . . V 2 38.5 16.966 -34.856 1 32.33 ? C9 P32 400 D 1 
HETATM 10 O O1 P32 . . . V 2 37.855 18.183 -34.534 1 35.87 ? O1 P32 400 D 1 
HETATM 11 C C4 P32 . . . V 2 38.352 18.982 -33.57 1 36.66 ? C4 P32 400 D 1 
HETATM 12 C C5 P32 . . . V 2 39.707 19.247 -33.509 1 30.66 ? C5 P32 400 D 1 
HETATM 13 C C6 P32 . . . V 2 40.184 20.117 -32.538 1 35.56 ? C6 P32 400 D 1 
HETATM 14 C C7 P32 . . . V 2 39.319 20.728 -31.634 1 39.28 ? C7 P32 400 D 1 
HETATM 15 C C8 P32 . . . V 2 37.959 20.45 -31.699 1 42.75 ? C8 P32 400 D 1 
HETATM 16 C C3 P32 . . . V 2 37.482 19.572 -32.668 1 39.3 ? C3 P32 400 D 1 
HETATM 17 N N1 P32 . . . V 2 36.908 20.857 -30.99 1 40.75 ? N1 P32 400 D 1 
HETATM 18 C C1 P32 . . . V 2 35.833 20.267 -31.525 1 38.93 ? C1 P32 400 D 1 
HETATM 19 C C2 P32 . . . V 2 36.173 19.473 -32.522 1 33.27 ? C2 P32 400 D 1 
HETATM 20 C C16 P32 . . . V 2 34.501 20.454 -31.031 1 42.98 ? C16 P32 400 D 1 
HETATM 21 C C14 P32 . . . V 2 34.537 12.34 -35.546 1 19.43 ? C14 P32 400 D 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    31 
_model_server_stats.query_time_ms           383 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           21 
#