data_2VT4 # _model_server_result.job_id 7Ne5RhYikhoxDNXIfaaqaQ _model_server_result.datetime_utc '2024-11-01 11:26:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2vt4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":406}' # _entry.id 2VT4 # _exptl.entry_id 2VT4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 142.282 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DECANE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 67.6 _cell.angle_beta 73.3 _cell.angle_gamma 85.8 _cell.entry_id 2VT4 _cell.length_a 55.5 _cell.length_b 86.8 _cell.length_c 95.5 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2VT4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS dimeric 2 software_defined_assembly 1 PQS dimeric 2 software_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 ? monomeric 1 author_defined_assembly 4 ? monomeric 1 author_defined_assembly 5 ? monomeric 1 author_defined_assembly 6 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,I,J,K,L,M,N,O,AA,BA 1 1 C,D,P,Q,R,S,T,U,V,W,X,Y,Z,CA,DA 2 1 A,E,F,G,H,I,J,AA 3 1 B,K,L,M,N,O,BA 4 1 C,P,Q,R,S,T,U,CA 5 1 D,V,W,X,Y,Z,DA 6 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 J N N ? 5 U N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 84 A CYS 114 1_555 A SG CYS 169 A CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf2 A SG CYS 162 A CYS 192 1_555 A SG CYS 168 A CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? disulf ? disulf3 B SG CYS 84 B CYS 114 1_555 B SG CYS 169 B CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf4 B SG CYS 162 B CYS 192 1_555 B SG CYS 168 B CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? disulf ? disulf5 C SG CYS 84 C CYS 114 1_555 C SG CYS 169 C CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf6 C SG CYS 162 C CYS 192 1_555 C SG CYS 168 C CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? disulf ? disulf7 D SG CYS 84 D CYS 114 1_555 D SG CYS 169 D CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf8 D SG CYS 162 D CYS 192 1_555 D SG CYS 168 D CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? metalc ? metalc1 A O CYS 162 A CYS 192 1_555 F NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.472 ? metalc ? metalc2 A O ASP 165 A ASP 195 1_555 F NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? metalc ? metalc3 A O CYS 168 A CYS 198 1_555 F NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc4 F NA NA . A NA 401 1_555 AA O HOH . A HOH 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.474 ? metalc ? metalc5 F NA NA . A NA 401 1_555 AA O HOH . A HOH 2006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.465 ? metalc ? metalc6 B O ASP 165 B ASP 195 1_555 L NA NA . B NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.453 ? metalc ? metalc7 B O CYS 168 B CYS 198 1_555 L NA NA . B NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.477 ? metalc ? metalc8 C O ASP 165 C ASP 195 1_555 Q NA NA . C NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.437 ? metalc ? metalc9 C O CYS 168 C CYS 198 1_555 Q NA NA . C NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.474 ? metalc ? metalc10 Q NA NA . C NA 401 1_555 CA O HOH . C HOH 2005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.578 ? metalc ? metalc11 D O CYS 162 D CYS 192 1_555 W NA NA . D NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.46 ? metalc ? metalc12 D O ASP 165 D ASP 195 1_555 W NA NA . D NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? metalc ? metalc13 D O CYS 168 D CYS 198 1_555 W NA NA . D NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc14 W NA NA . D NA 401 1_555 DA O HOH . D HOH 2004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? # _chem_comp.formula 'C10 H22' _chem_comp.formula_weight 142.282 _chem_comp.id D10 _chem_comp.mon_nstd_flag . _chem_comp.name DECANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 D10 sing 83 n n C1 H11 D10 sing 84 n n C1 H12 D10 sing 85 n n C1 H13 D10 sing 86 n n C2 C3 D10 sing 87 n n C2 H21 D10 sing 88 n n C2 H22 D10 sing 89 n n C3 C4 D10 sing 90 n n C3 H31 D10 sing 91 n n C3 H32 D10 sing 92 n n C4 C5 D10 sing 93 n n C4 H41 D10 sing 94 n n C4 H42 D10 sing 95 n n C5 C6 D10 sing 96 n n C5 H51 D10 sing 97 n n C5 H52 D10 sing 98 n n C6 C7 D10 sing 99 n n C6 H61 D10 sing 100 n n C6 H62 D10 sing 101 n n C7 C8 D10 sing 102 n n C7 H71 D10 sing 103 n n C7 H72 D10 sing 104 n n C8 C9 D10 sing 105 n n C8 H81 D10 sing 106 n n C8 H82 D10 sing 107 n n C9 C10 D10 sing 108 n n C9 H91 D10 sing 109 n n C9 H92 D10 sing 110 n n C10 H101 D10 sing 111 n n C10 H102 D10 sing 112 n n C10 H103 D10 sing 113 n n # _atom_sites.entry_id 2VT4 _atom_sites.fract_transf_matrix[1][1] 0.018018 _atom_sites.fract_transf_matrix[1][2] -0.001323 _atom_sites.fract_transf_matrix[1][3] -0.005298 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011552 _atom_sites.fract_transf_matrix[2][3] -0.0047 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011803 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 P32 A 1 400 400 P32 P32 . F 3 NA A 1 401 401 NA NA . G 4 SOG A 1 402 402 SOG SOG . H 4 SOG A 1 403 403 SOG SOG . I 4 SOG A 1 405 405 SOG SOG . J 5 D10 A 1 406 406 D10 D10 . K 2 P32 B 1 400 400 P32 P32 . L 3 NA B 1 401 401 NA NA . M 4 SOG B 1 402 402 SOG SOG . N 4 SOG B 1 404 404 SOG SOG . O 4 SOG B 1 405 405 SOG SOG . P 2 P32 C 1 400 400 P32 P32 . Q 3 NA C 1 401 401 NA NA . R 4 SOG C 1 402 402 SOG SOG . S 4 SOG C 1 404 404 SOG SOG . T 4 SOG C 1 405 405 SOG SOG . U 5 D10 C 1 406 406 D10 D10 . V 2 P32 D 1 400 400 P32 P32 . W 3 NA D 1 401 401 NA NA . X 4 SOG D 1 402 402 SOG SOG . Y 4 SOG D 1 403 403 SOG SOG . Z 4 SOG D 1 405 405 SOG SOG . AA 6 HOH A 1 2001 2001 HOH HOH . AA 6 HOH A 2 2002 2002 HOH HOH . AA 6 HOH A 3 2003 2003 HOH HOH . AA 6 HOH A 4 2004 2004 HOH HOH . AA 6 HOH A 5 2005 2005 HOH HOH . AA 6 HOH A 6 2006 2006 HOH HOH . AA 6 HOH A 7 2007 2007 HOH HOH . AA 6 HOH A 8 2008 2008 HOH HOH . AA 6 HOH A 9 2009 2009 HOH HOH . BA 6 HOH B 1 2001 2001 HOH HOH . BA 6 HOH B 2 2002 2002 HOH HOH . BA 6 HOH B 3 2003 2003 HOH HOH . BA 6 HOH B 4 2004 2004 HOH HOH . BA 6 HOH B 5 2005 2005 HOH HOH . BA 6 HOH B 6 2006 2006 HOH HOH . BA 6 HOH B 7 2007 2007 HOH HOH . CA 6 HOH C 1 2001 2001 HOH HOH . CA 6 HOH C 2 2002 2002 HOH HOH . CA 6 HOH C 3 2003 2003 HOH HOH . CA 6 HOH C 4 2004 2004 HOH HOH . CA 6 HOH C 5 2005 2005 HOH HOH . CA 6 HOH C 6 2006 2006 HOH HOH . CA 6 HOH C 7 2007 2007 HOH HOH . DA 6 HOH D 1 2001 2001 HOH HOH . DA 6 HOH D 2 2002 2002 HOH HOH . DA 6 HOH D 3 2003 2003 HOH HOH . DA 6 HOH D 4 2004 2004 HOH HOH . DA 6 HOH D 5 2005 2005 HOH HOH . DA 6 HOH D 6 2006 2006 HOH HOH . DA 6 HOH D 7 2007 2007 HOH HOH . DA 6 HOH D 8 2008 2008 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 D10 . . . J 5 19.028 9.664 16.538 1 40.95 ? C1 D10 406 A 1 HETATM 2 C C2 D10 . . . J 5 17.621 9.107 16.199 1 48.1 ? C2 D10 406 A 1 HETATM 3 C C3 D10 . . . J 5 17.391 8.918 14.671 1 36.62 ? C3 D10 406 A 1 HETATM 4 C C4 D10 . . . J 5 17.161 7.433 14.321 1 26.26 ? C4 D10 406 A 1 HETATM 5 C C5 D10 . . . J 5 15.929 7.244 13.402 1 44.5 ? C5 D10 406 A 1 HETATM 6 C C6 D10 . . . J 5 14.802 6.476 14.147 1 46.86 ? C6 D10 406 A 1 HETATM 7 C C7 D10 . . . J 5 14.087 5.461 13.218 1 45.93 ? C7 D10 406 A 1 HETATM 8 C C8 D10 . . . J 5 13.066 4.636 14.037 1 47.31 ? C8 D10 406 A 1 HETATM 9 C C9 D10 . . . J 5 11.854 4.215 13.175 1 41.88 ? C9 D10 406 A 1 HETATM 10 C C10 D10 . . . J 5 10.54 4.66 13.853 1 25.77 ? C10 D10 406 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 37 _model_server_stats.query_time_ms 323 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 10 #