data_2VUE # _model_server_result.job_id 31IwhJN-SfyWzuwauAdvoA _model_server_result.datetime_utc '2024-11-06 00:03:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2vue # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":2001}' # _entry.id 2VUE # _exptl.entry_id 2VUE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 582.646 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'BILIVERDINE IX ALPHA' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 81.22 _cell.angle_beta 90.7 _cell.angle_gamma 65.42 _cell.entry_id 2VUE _cell.length_a 55.09 _cell.length_b 55.54 _cell.length_c 119.83 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2VUE _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS monomeric 1 author_and_software_defined_assembly 1 PQS monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 53 A CYS 53 1_555 A SG CYS 62 A CYS 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf2 A SG CYS 75 A CYS 75 1_555 A SG CYS 91 A CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? disulf ? disulf3 A SG CYS 90 A CYS 90 1_555 A SG CYS 101 A CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf4 A SG CYS 124 A CYS 124 1_555 A SG CYS 169 A CYS 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 A SG CYS 168 A CYS 168 1_555 A SG CYS 177 A CYS 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf6 A SG CYS 200 A CYS 200 1_555 A SG CYS 246 A CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf7 A SG CYS 245 A CYS 245 1_555 A SG CYS 253 A CYS 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf8 A SG CYS 265 A CYS 265 1_555 A SG CYS 279 A CYS 279 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf9 A SG CYS 278 A CYS 278 1_555 A SG CYS 289 A CYS 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf10 A SG CYS 316 A CYS 316 1_555 A SG CYS 361 A CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf11 A SG CYS 360 A CYS 360 1_555 A SG CYS 369 A CYS 369 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf12 A SG CYS 392 A CYS 392 1_555 A SG CYS 438 A CYS 438 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf13 A SG CYS 437 A CYS 437 1_555 A SG CYS 448 A CYS 448 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf14 A SG CYS 461 A CYS 461 1_555 A SG CYS 477 A CYS 477 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? disulf ? disulf15 A SG CYS 476 A CYS 476 1_555 A SG CYS 487 A CYS 487 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf16 A SG CYS 514 A CYS 514 1_555 A SG CYS 559 A CYS 559 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf17 A SG CYS 558 A CYS 558 1_555 A SG CYS 567 A CYS 567 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf18 B SG CYS 53 B CYS 53 1_555 B SG CYS 62 B CYS 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf19 B SG CYS 75 B CYS 75 1_555 B SG CYS 91 B CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf20 B SG CYS 90 B CYS 90 1_555 B SG CYS 101 B CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf21 B SG CYS 124 B CYS 124 1_555 B SG CYS 169 B CYS 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf22 B SG CYS 168 B CYS 168 1_555 B SG CYS 177 B CYS 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf23 B SG CYS 200 B CYS 200 1_555 B SG CYS 246 B CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf24 B SG CYS 245 B CYS 245 1_555 B SG CYS 253 B CYS 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf25 B SG CYS 265 B CYS 265 1_555 B SG CYS 279 B CYS 279 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf26 B SG CYS 278 B CYS 278 1_555 B SG CYS 289 B CYS 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? disulf ? disulf27 B SG CYS 316 B CYS 316 1_555 B SG CYS 361 B CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf28 B SG CYS 360 B CYS 360 1_555 B SG CYS 369 B CYS 369 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf29 B SG CYS 392 B CYS 392 1_555 B SG CYS 438 B CYS 438 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf30 B SG CYS 437 B CYS 437 1_555 B SG CYS 448 B CYS 448 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? disulf ? disulf31 B SG CYS 461 B CYS 461 1_555 B SG CYS 477 B CYS 477 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf32 B SG CYS 476 B CYS 476 1_555 B SG CYS 487 B CYS 487 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf33 B SG CYS 514 B CYS 514 1_555 B SG CYS 559 B CYS 559 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf34 B SG CYS 558 B CYS 558 1_555 B SG CYS 567 B CYS 567 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? # _chem_comp.formula 'C33 H34 N4 O6' _chem_comp.formula_weight 582.646 _chem_comp.id BLA _chem_comp.mon_nstd_flag . _chem_comp.name 'BILIVERDINE IX ALPHA' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A BLA sing 70 n n CHA C4D BLA doub 71 z n CHA HHA BLA sing 72 n n NA C1A BLA sing 73 n y NA C4A BLA sing 74 n y NA HA BLA sing 75 n n C1A C2A BLA doub 76 n y C2A C3A BLA sing 77 n y C2A CAA BLA sing 78 n n C3A C4A BLA doub 79 n y C3A CMA BLA sing 80 n n C4A CHB BLA sing 81 n n CMA HMA1 BLA sing 82 n n CMA HMA2 BLA sing 83 n n CMA HMA3 BLA sing 84 n n CAA CBA BLA sing 85 n n CAA HAA1 BLA sing 86 n n CAA HAA2 BLA sing 87 n n CBA CGA BLA sing 88 n n CBA HBA1 BLA sing 89 n n CBA HBA2 BLA sing 90 n n CGA O1A BLA doub 91 n n CGA O2A BLA sing 92 n n O2A H2A BLA sing 93 n n CHB C1B BLA doub 94 z n CHB HHB BLA sing 95 n n NB C1B BLA sing 96 n n NB C4B BLA sing 97 n n NB HB BLA sing 98 n n C1B C2B BLA sing 99 n n C2B C3B BLA doub 100 n n C2B CMB BLA sing 101 n n C3B C4B BLA sing 102 n n C3B CAB BLA sing 103 n n C4B OB BLA doub 104 n n CMB HMB1 BLA sing 105 n n CMB HMB2 BLA sing 106 n n CMB HMB3 BLA sing 107 n n CAB CBB BLA doub 108 n n CAB HAB BLA sing 109 n n CBB HBB1 BLA sing 110 n n CBB HBB2 BLA sing 111 n n NC C1C BLA sing 112 n n NC C4C BLA sing 113 n n NC HC BLA sing 114 n n C1C C2C BLA sing 115 n n C1C OC BLA doub 116 n n C2C C3C BLA doub 117 n n C2C CMC BLA sing 118 n n C3C C4C BLA sing 119 n n C3C CAC BLA sing 120 n n C4C CHD BLA doub 121 z n CMC HMC1 BLA sing 122 n n CMC HMC2 BLA sing 123 n n CMC HMC3 BLA sing 124 n n CAC CBC BLA doub 125 n n CAC HAC BLA sing 126 n n CBC HBC1 BLA sing 127 n n CBC HBC2 BLA sing 128 n n CHD C1D BLA sing 129 n n CHD HHD BLA sing 130 n n ND C1D BLA doub 131 n n ND C4D BLA sing 132 n n C1D C2D BLA sing 133 n n C2D C3D BLA doub 134 n n C2D CMD BLA sing 135 n n C3D C4D BLA sing 136 n n C3D CAD BLA sing 137 n n CMD HMD1 BLA sing 138 n n CMD HMD2 BLA sing 139 n n CMD HMD3 BLA sing 140 n n CAD CBD BLA sing 141 n n CAD HAD1 BLA sing 142 n n CAD HAD2 BLA sing 143 n n CBD CGD BLA sing 144 n n CBD HBD1 BLA sing 145 n n CBD HBD2 BLA sing 146 n n CGD O1D BLA doub 147 n n CGD O2D BLA sing 148 n n O2D H2D BLA sing 149 n n # _atom_sites.entry_id 2VUE _atom_sites.fract_transf_matrix[1][1] 0.018152 _atom_sites.fract_transf_matrix[1][2] -0.008303 _atom_sites.fract_transf_matrix[1][3] 0.001688 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019799 _atom_sites.fract_transf_matrix[2][3] -0.003487 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008474 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 BLA A 1 2001 2001 BLA BLA . D 2 BLA B 1 2001 2001 BLA BLA . E 3 HOH A 1 2002 2002 HOH HOH . E 3 HOH A 2 2003 2003 HOH HOH . E 3 HOH A 3 2004 2004 HOH HOH . E 3 HOH A 4 2005 2005 HOH HOH . E 3 HOH A 5 2006 2006 HOH HOH . E 3 HOH A 6 2007 2007 HOH HOH . E 3 HOH A 7 2008 2008 HOH HOH . E 3 HOH A 8 2009 2009 HOH HOH . F 3 HOH B 1 2002 2002 HOH HOH . F 3 HOH B 2 2003 2003 HOH HOH . F 3 HOH B 3 2004 2004 HOH HOH . F 3 HOH B 4 2005 2005 HOH HOH . F 3 HOH B 5 2006 2006 HOH HOH . F 3 HOH B 6 2007 2007 HOH HOH . F 3 HOH B 7 2008 2008 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA BLA . . . D 2 63.445 21.585 50.456 1 108.19 ? CHA BLA 2001 B 1 HETATM 2 N NA BLA . . . D 2 64.251 19.934 48.797 1 111.93 ? NA BLA 2001 B 1 HETATM 3 C C1A BLA . . . D 2 63.438 21.01 49.118 1 110.28 ? C1A BLA 2001 B 1 HETATM 4 C C2A BLA . . . D 2 62.628 21.417 47.923 1 110.03 ? C2A BLA 2001 B 1 HETATM 5 C C3A BLA . . . D 2 62.998 20.55 46.933 1 111.7 ? C3A BLA 2001 B 1 HETATM 6 C C4A BLA . . . D 2 64.019 19.623 47.484 1 113.19 ? C4A BLA 2001 B 1 HETATM 7 C CMA BLA . . . D 2 62.462 20.531 45.505 1 110.94 ? CMA BLA 2001 B 1 HETATM 8 C CAA BLA . . . D 2 61.595 22.555 47.799 1 108.03 ? CAA BLA 2001 B 1 HETATM 9 C CBA BLA . . . D 2 62.165 23.84 47.107 1 107.06 ? CBA BLA 2001 B 1 HETATM 10 C CGA BLA . . . D 2 62.885 24.852 48.008 1 106.94 ? CGA BLA 2001 B 1 HETATM 11 O O1A BLA . . . D 2 63.439 24.594 49.099 1 106.89 ? O1A BLA 2001 B 1 HETATM 12 O O2A BLA . . . D 2 62.908 26.156 47.545 1 105.96 ? O2A BLA 2001 B 1 HETATM 13 C CHB BLA . . . D 2 64.701 18.546 46.827 1 115.98 ? CHB BLA 2001 B 1 HETATM 14 N NB BLA . . . D 2 65.544 17.201 44.993 1 119.93 ? NB BLA 2001 B 1 HETATM 15 C C1B BLA . . . D 2 65.177 18.421 45.491 1 118.69 ? C1B BLA 2001 B 1 HETATM 16 C C2B BLA . . . D 2 65.351 19.499 44.456 1 119.64 ? C2B BLA 2001 B 1 HETATM 17 C C3B BLA . . . D 2 65.843 18.851 43.316 1 120.32 ? C3B BLA 2001 B 1 HETATM 18 C C4B BLA . . . D 2 65.94 17.449 43.703 1 120.58 ? C4B BLA 2001 B 1 HETATM 19 C CMB BLA . . . D 2 65.05 20.982 44.624 1 120.63 ? CMB BLA 2001 B 1 HETATM 20 O OB BLA . . . D 2 66.335 16.541 42.968 1 121.6 ? OB BLA 2001 B 1 HETATM 21 C CAB BLA . . . D 2 66.206 19.282 42.035 1 120.75 ? CAB BLA 2001 B 1 HETATM 22 C CBB BLA . . . D 2 67.504 19.428 41.539 1 121.08 ? CBB BLA 2001 B 1 HETATM 23 N NC BLA . . . D 2 59.753 25.425 49.604 1 89.5 ? NC BLA 2001 B 1 HETATM 24 C C1C BLA . . . D 2 58.93 26.281 48.884 1 87.5 ? C1C BLA 2001 B 1 HETATM 25 C C2C BLA . . . D 2 57.682 26.523 49.559 1 88.24 ? C2C BLA 2001 B 1 HETATM 26 C C3C BLA . . . D 2 57.735 25.816 50.703 1 90.49 ? C3C BLA 2001 B 1 HETATM 27 C C4C BLA . . . D 2 59.081 25.094 50.745 1 92.13 ? C4C BLA 2001 B 1 HETATM 28 C CMC BLA . . . D 2 56.612 27.438 48.95 1 86.46 ? CMC BLA 2001 B 1 HETATM 29 O OC BLA . . . D 2 59.22 26.786 47.794 1 83.49 ? OC BLA 2001 B 1 HETATM 30 C CAC BLA . . . D 2 56.697 25.778 51.682 1 91.06 ? CAC BLA 2001 B 1 HETATM 31 C CBC BLA . . . D 2 55.97 24.522 51.869 1 92.46 ? CBC BLA 2001 B 1 HETATM 32 C CHD BLA . . . D 2 59.551 24.247 51.766 1 96.93 ? CHD BLA 2001 B 1 HETATM 33 N ND BLA . . . D 2 61.574 23.155 50.85 1 103.67 ? ND BLA 2001 B 1 HETATM 34 C C1D BLA . . . D 2 60.525 23.242 51.738 1 101.9 ? C1D BLA 2001 B 1 HETATM 35 C C2D BLA . . . D 2 60.551 22.123 52.675 1 104.17 ? C2D BLA 2001 B 1 HETATM 36 C C3D BLA . . . D 2 61.658 21.344 52.332 1 105.6 ? C3D BLA 2001 B 1 HETATM 37 C C4D BLA . . . D 2 62.277 22.007 51.187 1 105.83 ? C4D BLA 2001 B 1 HETATM 38 C CMD BLA . . . D 2 59.548 21.848 53.825 1 104.85 ? CMD BLA 2001 B 1 HETATM 39 C CAD BLA . . . D 2 62.14 20.032 53.012 1 105.5 ? CAD BLA 2001 B 1 HETATM 40 C CBD BLA . . . D 2 61.732 19.963 54.534 1 105.43 ? CBD BLA 2001 B 1 HETATM 41 C CGD BLA . . . D 2 62.289 21.132 55.341 1 106.43 ? CGD BLA 2001 B 1 HETATM 42 O O1D BLA . . . D 2 61.639 22.174 55.512 1 105.02 ? O1D BLA 2001 B 1 HETATM 43 O O2D BLA . . . D 2 63.525 21.099 55.931 1 107.32 ? O2D BLA 2001 B 1 # _model_server_stats.io_time_ms 72 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 29 _model_server_stats.element_count 43 #