data_2VUF # _model_server_result.job_id w7GKbTmjcbRpaYIedrfLtQ _model_server_result.datetime_utc '2024-12-07 08:39:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2vuf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":2001}' # _entry.id 2VUF # _exptl.entry_id 2VUF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 516.709 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FUSIDIC ACID' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 81.69 _cell.angle_beta 90.73 _cell.angle_gamma 65.83 _cell.entry_id 2VUF _cell.length_a 55.18 _cell.length_b 55.32 _cell.length_c 119.83 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2VUF _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS monomeric 1 author_and_software_defined_assembly 1 PQS monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D 1 1 B,E,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 53 A CYS 53 1_555 A SG CYS 62 A CYS 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? disulf ? disulf2 A SG CYS 75 A CYS 75 1_555 A SG CYS 91 A CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? disulf ? disulf3 A SG CYS 90 A CYS 90 1_555 A SG CYS 101 A CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf4 A SG CYS 124 A CYS 124 1_555 A SG CYS 169 A CYS 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf5 A SG CYS 168 A CYS 168 1_555 A SG CYS 177 A CYS 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf6 A SG CYS 200 A CYS 200 1_555 A SG CYS 246 A CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? disulf ? disulf7 A SG CYS 245 A CYS 245 1_555 A SG CYS 253 A CYS 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf8 A SG CYS 265 A CYS 265 1_555 A SG CYS 279 A CYS 279 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? disulf ? disulf9 A SG CYS 278 A CYS 278 1_555 A SG CYS 289 A CYS 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? disulf ? disulf10 A SG CYS 316 A CYS 316 1_555 A SG CYS 361 A CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf11 A SG CYS 360 A CYS 360 1_555 A SG CYS 369 A CYS 369 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf12 A SG CYS 392 A CYS 392 1_555 A SG CYS 438 A CYS 438 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf13 A SG CYS 437 A CYS 437 1_555 A SG CYS 448 A CYS 448 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf14 A SG CYS 461 A CYS 461 1_555 A SG CYS 477 A CYS 477 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf15 A SG CYS 476 A CYS 476 1_555 A SG CYS 487 A CYS 487 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? disulf ? disulf16 A SG CYS 514 A CYS 514 1_555 A SG CYS 559 A CYS 559 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf17 A SG CYS 558 A CYS 558 1_555 A SG CYS 567 A CYS 567 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf18 B SG CYS 53 B CYS 53 1_555 B SG CYS 62 B CYS 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? disulf ? disulf19 B SG CYS 75 B CYS 75 1_555 B SG CYS 91 B CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? disulf ? disulf20 B SG CYS 90 B CYS 90 1_555 B SG CYS 101 B CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf21 B SG CYS 124 B CYS 124 1_555 B SG CYS 169 B CYS 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? disulf ? disulf22 B SG CYS 168 B CYS 168 1_555 B SG CYS 177 B CYS 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf23 B SG CYS 200 B CYS 200 1_555 B SG CYS 246 B CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf24 B SG CYS 245 B CYS 245 1_555 B SG CYS 253 B CYS 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? disulf ? disulf25 B SG CYS 265 B CYS 265 1_555 B SG CYS 279 B CYS 279 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf26 B SG CYS 278 B CYS 278 1_555 B SG CYS 289 B CYS 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf27 B SG CYS 316 B CYS 316 1_555 B SG CYS 361 B CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf28 B SG CYS 360 B CYS 360 1_555 B SG CYS 369 B CYS 369 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf29 B SG CYS 392 B CYS 392 1_555 B SG CYS 438 B CYS 438 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf30 B SG CYS 437 B CYS 437 1_555 B SG CYS 448 B CYS 448 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf31 B SG CYS 461 B CYS 461 1_555 B SG CYS 477 B CYS 477 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf32 B SG CYS 476 B CYS 476 1_555 B SG CYS 487 B CYS 487 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf33 B SG CYS 514 B CYS 514 1_555 B SG CYS 559 B CYS 559 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? # _chem_comp.formula 'C31 H48 O6' _chem_comp.formula_weight 516.709 _chem_comp.id FUA _chem_comp.mon_nstd_flag . _chem_comp.name 'FUSIDIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 FUA sing 83 n n C1 C10 FUA sing 84 n n C1 H11A FUA sing 85 n n C1 H12 FUA sing 86 n n C2 C3 FUA sing 87 n n C2 H21 FUA sing 88 n n C2 H22 FUA sing 89 n n C3 C4 FUA sing 90 n n C3 O6 FUA sing 91 n n C3 H3 FUA sing 92 n n C4 C5 FUA sing 93 n n C4 C18 FUA sing 94 n n C4 H4 FUA sing 95 n n C5 C6 FUA sing 96 n n C5 C10 FUA sing 97 n n C5 H5 FUA sing 98 n n C6 C7 FUA sing 99 n n C6 H61 FUA sing 100 n n C6 H62 FUA sing 101 n n C7 C8 FUA sing 102 n n C7 H71 FUA sing 103 n n C7 H72 FUA sing 104 n n C8 C9 FUA sing 105 n n C8 C14 FUA sing 106 n n C8 C20 FUA sing 107 n n C9 C10 FUA sing 108 n n C9 C11 FUA sing 109 n n C9 H9 FUA sing 110 n n C10 C19 FUA sing 111 n n C11 C12 FUA sing 112 n n C11 O1 FUA sing 113 n n C11 H11 FUA sing 114 n n C12 C13 FUA sing 115 n n C12 H121 FUA sing 116 n n C12 H122 FUA sing 117 n n C13 C14 FUA sing 118 n n C13 C17 FUA sing 119 n n C13 H13 FUA sing 120 n n C14 C15 FUA sing 121 n n C14 C21 FUA sing 122 n n C15 C16 FUA sing 123 n n C15 H151 FUA sing 124 n n C15 H152 FUA sing 125 n n C16 C17 FUA sing 126 n n C16 O2 FUA sing 127 n n C16 H16 FUA sing 128 n n C17 C22 FUA doub 129 z n C18 H181 FUA sing 130 n n C18 H182 FUA sing 131 n n C18 H183 FUA sing 132 n n C19 H191 FUA sing 133 n n C19 H192 FUA sing 134 n n C19 H193 FUA sing 135 n n C20 H201 FUA sing 136 n n C20 H202 FUA sing 137 n n C20 H203 FUA sing 138 n n C21 H211 FUA sing 139 n n C21 H212 FUA sing 140 n n C21 H213 FUA sing 141 n n C22 C23 FUA sing 142 n n C22 C29 FUA sing 143 n n C23 C24 FUA sing 144 n n C23 H231 FUA sing 145 n n C23 H232 FUA sing 146 n n C24 C25 FUA sing 147 n n C24 H241 FUA sing 148 n n C24 H242 FUA sing 149 n n C25 C26 FUA doub 150 n n C25 H25 FUA sing 151 n n C26 C27 FUA sing 152 n n C26 C28 FUA sing 153 n n C27 H271 FUA sing 154 n n C27 H272 FUA sing 155 n n C27 H273 FUA sing 156 n n C28 H281 FUA sing 157 n n C28 H282 FUA sing 158 n n C28 H283 FUA sing 159 n n C29 O4 FUA doub 160 n n C29 O5 FUA sing 161 n n C31 C32 FUA sing 162 n n C31 O2 FUA sing 163 n n C31 O3 FUA doub 164 n n C32 H321 FUA sing 165 n n C32 H322 FUA sing 166 n n C32 H323 FUA sing 167 n n O1 HO1 FUA sing 168 n n O5 HO5 FUA sing 169 n n O6 HO6 FUA sing 170 n n # _atom_sites.entry_id 2VUF _atom_sites.fract_transf_matrix[1][1] 0.018123 _atom_sites.fract_transf_matrix[1][2] -0.008133 _atom_sites.fract_transf_matrix[1][3] 0.001587 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019814 _atom_sites.fract_transf_matrix[2][3] -0.003297 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008461 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FUA A 1 2001 2001 FUA FUA . D 2 FUA A 1 2002 2002 FUA FUA . E 2 FUA B 1 2001 2001 FUA FUA . F 2 FUA B 1 2002 2002 FUA FUA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 FUA . . . E 2 61.324 20.258 44.133 1 79.65 ? C1 FUA 2001 B 1 HETATM 2 C C2 FUA . . . E 2 61.148 19.551 42.746 1 79.67 ? C2 FUA 2001 B 1 HETATM 3 C C3 FUA . . . E 2 62.404 19.571 41.911 1 80.61 ? C3 FUA 2001 B 1 HETATM 4 C C4 FUA . . . E 2 63.758 19.137 42.707 1 80.56 ? C4 FUA 2001 B 1 HETATM 5 C C5 FUA . . . E 2 63.793 19.932 43.994 1 80.06 ? C5 FUA 2001 B 1 HETATM 6 C C6 FUA . . . E 2 65.188 19.743 44.703 1 80.79 ? C6 FUA 2001 B 1 HETATM 7 C C7 FUA . . . E 2 65.204 20.033 46.265 1 79.92 ? C7 FUA 2001 B 1 HETATM 8 C C8 FUA . . . E 2 64.21 21.18 46.697 1 79.75 ? C8 FUA 2001 B 1 HETATM 9 C C9 FUA . . . E 2 62.753 20.587 46.351 1 79.15 ? C9 FUA 2001 B 1 HETATM 10 C C10 FUA . . . E 2 62.567 19.852 44.922 1 79.62 ? C10 FUA 2001 B 1 HETATM 11 C C11 FUA . . . E 2 61.574 21.53 46.899 1 77.91 ? C11 FUA 2001 B 1 HETATM 12 C C12 FUA . . . E 2 61.725 21.807 48.413 1 78.09 ? C12 FUA 2001 B 1 HETATM 13 C C13 FUA . . . E 2 63.158 22.285 48.841 1 79.36 ? C13 FUA 2001 B 1 HETATM 14 C C14 FUA . . . E 2 64.289 21.349 48.327 1 79.51 ? C14 FUA 2001 B 1 HETATM 15 C C15 FUA . . . E 2 65.504 22.062 48.833 1 79.87 ? C15 FUA 2001 B 1 HETATM 16 C C16 FUA . . . E 2 65.135 22.727 50.161 1 80.59 ? C16 FUA 2001 B 1 HETATM 17 C C17 FUA . . . E 2 63.574 22.659 50.24 1 79.53 ? C17 FUA 2001 B 1 HETATM 18 C C18 FUA . . . E 2 64.913 19.195 41.796 1 80.82 ? C18 FUA 2001 B 1 HETATM 19 C C19 FUA . . . E 2 62.314 18.368 45.393 1 79.5 ? C19 FUA 2001 B 1 HETATM 20 C C20 FUA . . . E 2 64.581 22.473 46.057 1 80.06 ? C20 FUA 2001 B 1 HETATM 21 C C21 FUA . . . E 2 64.2 19.983 49.1 1 78.91 ? C21 FUA 2001 B 1 HETATM 22 C C22 FUA . . . E 2 62.927 22.896 51.399 1 78.11 ? C22 FUA 2001 B 1 HETATM 23 C C23 FUA . . . E 2 61.399 22.861 51.605 1 76.87 ? C23 FUA 2001 B 1 HETATM 24 C C24 FUA . . . E 2 60.786 24.179 52.1 1 77.31 ? C24 FUA 2001 B 1 HETATM 25 C C25 FUA . . . E 2 59.557 24.725 51.51 1 76.86 ? C25 FUA 2001 B 1 HETATM 26 C C26 FUA . . . E 2 58.365 24.726 51.875 1 76.08 ? C26 FUA 2001 B 1 HETATM 27 C C27 FUA . . . E 2 57.096 25.355 51.177 1 75.26 ? C27 FUA 2001 B 1 HETATM 28 C C28 FUA . . . E 2 57.769 24.046 53.195 1 75.87 ? C28 FUA 2001 B 1 HETATM 29 C C29 FUA . . . E 2 63.626 23.305 52.625 1 77.38 ? C29 FUA 2001 B 1 HETATM 30 C C31 FUA . . . E 2 66.983 22.287 51.761 1 84.98 ? C31 FUA 2001 B 1 HETATM 31 C C32 FUA . . . E 2 67.441 21.444 52.794 1 85.79 ? C32 FUA 2001 B 1 HETATM 32 O O1 FUA . . . E 2 61.548 22.755 46.209 1 76.89 ? O1 FUA 2001 B 1 HETATM 33 O O2 FUA . . . E 2 65.755 21.952 51.245 1 82.59 ? O2 FUA 2001 B 1 HETATM 34 O O3 FUA . . . E 2 67.592 23.175 51.393 1 85.92 ? O3 FUA 2001 B 1 HETATM 35 O O4 FUA . . . E 2 63.642 22.589 53.627 1 77.31 ? O4 FUA 2001 B 1 HETATM 36 O O5 FUA . . . E 2 64.246 24.421 52.653 1 76.57 ? O5 FUA 2001 B 1 HETATM 37 O O6 FUA . . . E 2 62.594 20.916 41.403 1 81.88 ? O6 FUA 2001 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 256 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 37 #