data_2VUG # _model_server_result.job_id BeQh3bBSFhoze5kNEmTF_A _model_server_result.datetime_utc '2024-12-28 21:27:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2vug # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 2VUG # _exptl.entry_id 2VUG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2VUG _cell.length_a 58.962 _cell.length_b 103.257 _cell.length_c 150.93 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2VUG _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 2VUG _atom_sites.fract_transf_matrix[1][1] 0.01696 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009685 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006626 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ANP A 1 401 401 ANP ANP . D 3 MPD A 1 501 501 MPD MPD . E 3 MPD A 1 502 502 MPD MPD . F 2 ANP B 1 401 401 ANP ANP . G 3 MPD B 1 501 501 MPD MPD . H 3 MPD B 1 502 502 MPD MPD . I 3 MPD B 1 503 503 MPD MPD . J 4 MRD B 1 504 504 MRD MRD . K 4 MRD B 1 505 505 MRD MRD . L 5 HOH A 1 2001 2001 HOH HOH . L 5 HOH A 2 2002 2002 HOH HOH . L 5 HOH A 3 2003 2003 HOH HOH . M 5 HOH B 1 2001 2001 HOH HOH . M 5 HOH B 2 2002 2002 HOH HOH . M 5 HOH B 3 2003 2003 HOH HOH . M 5 HOH B 4 2004 2004 HOH HOH . M 5 HOH B 5 2005 2005 HOH HOH . M 5 HOH B 6 2006 2006 HOH HOH . M 5 HOH B 7 2007 2007 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . C 2 19.963 55.63 59.353 1 54.38 ? PG ANP 401 A 1 HETATM 2 O O1G ANP . . . C 2 19.975 54.144 59.083 1 55.31 ? O1G ANP 401 A 1 HETATM 3 O O2G ANP . . . C 2 19.073 56.409 58.406 1 54.55 ? O2G ANP 401 A 1 HETATM 4 O O3G ANP . . . C 2 19.828 56.003 60.812 1 55.19 ? O3G ANP 401 A 1 HETATM 5 P PB ANP . . . C 2 22.277 55.947 57.48 1 52.25 ? PB ANP 401 A 1 HETATM 6 O O1B ANP . . . C 2 23.534 56.79 57.386 1 51.35 ? O1B ANP 401 A 1 HETATM 7 O O2B ANP . . . C 2 22.33 54.45 57.194 1 52.65 ? O2B ANP 401 A 1 HETATM 8 N N3B ANP . . . C 2 21.602 56.142 59.068 1 52.99 ? N3B ANP 401 A 1 HETATM 9 P PA ANP . . . C 2 21.441 56.466 54.851 1 41.85 ? PA ANP 401 A 1 HETATM 10 O O1A ANP . . . C 2 21.058 55.069 54.44 1 40.73 ? O1A ANP 401 A 1 HETATM 11 O O2A ANP . . . C 2 22.8 57.004 54.499 1 41.98 ? O2A ANP 401 A 1 HETATM 12 O O3A ANP . . . C 2 21.23 56.597 56.442 1 47.45 ? O3A ANP 401 A 1 HETATM 13 O O5' ANP . . . C 2 20.337 57.517 54.35 1 42.59 ? O5' ANP 401 A 1 HETATM 14 C C5' ANP . . . C 2 19.746 58.489 55.217 1 41.76 ? C5' ANP 401 A 1 HETATM 15 C C4' ANP . . . C 2 20.731 59.637 55.313 1 41.58 ? C4' ANP 401 A 1 HETATM 16 O O4' ANP . . . C 2 20.87 60.265 54.042 1 41.01 ? O4' ANP 401 A 1 HETATM 17 C C3' ANP . . . C 2 20.342 60.714 56.308 1 41.19 ? C3' ANP 401 A 1 HETATM 18 O O3' ANP . . . C 2 20.939 60.41 57.574 1 42.12 ? O3' ANP 401 A 1 HETATM 19 C C2' ANP . . . C 2 20.929 61.974 55.706 1 40.49 ? C2' ANP 401 A 1 HETATM 20 O O2' ANP . . . C 2 22.236 62.215 56.245 1 38.72 ? O2' ANP 401 A 1 HETATM 21 C C1' ANP . . . C 2 21.11 61.656 54.231 1 41.33 ? C1' ANP 401 A 1 HETATM 22 N N9 ANP . . . C 2 20.213 62.353 53.279 1 41.56 ? N9 ANP 401 A 1 HETATM 23 C C8 ANP . . . C 2 20.599 62.634 52.022 1 42.23 ? C8 ANP 401 A 1 HETATM 24 N N7 ANP . . . C 2 19.62 63.238 51.309 1 42.41 ? N7 ANP 401 A 1 HETATM 25 C C5 ANP . . . C 2 18.561 63.352 52.129 1 41.9 ? C5 ANP 401 A 1 HETATM 26 C C6 ANP . . . C 2 17.194 63.91 51.994 1 41.62 ? C6 ANP 401 A 1 HETATM 27 N N6 ANP . . . C 2 16.797 64.461 50.821 1 42.04 ? N6 ANP 401 A 1 HETATM 28 N N1 ANP . . . C 2 16.37 63.846 53.058 1 41.3 ? N1 ANP 401 A 1 HETATM 29 C C2 ANP . . . C 2 16.797 63.284 54.21 1 42.31 ? C2 ANP 401 A 1 HETATM 30 N N3 ANP . . . C 2 18.03 62.759 54.415 1 41.9 ? N3 ANP 401 A 1 HETATM 31 C C4 ANP . . . C 2 18.949 62.76 53.424 1 41.52 ? C4 ANP 401 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 221 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #