data_2VUG # _model_server_result.job_id R3LLq93y64JCWKZ75dQDnw _model_server_result.datetime_utc '2024-12-28 20:58:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2vug # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":501}' # _entry.id 2VUG # _exptl.entry_id 2VUG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S)-2-METHYL-2,4-PENTANEDIOL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2VUG _cell.length_a 58.962 _cell.length_b 103.257 _cell.length_c 150.93 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2VUG _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 G N N ? 3 H N N ? 3 I N N # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MPD _chem_comp.mon_nstd_flag . _chem_comp.name (4S)-2-METHYL-2,4-PENTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MPD sing 287 n n C1 H11 MPD sing 288 n n C1 H12 MPD sing 289 n n C1 H13 MPD sing 290 n n C2 O2 MPD sing 291 n n C2 CM MPD sing 292 n n C2 C3 MPD sing 293 n n O2 HO2 MPD sing 294 n n CM HM1 MPD sing 295 n n CM HM2 MPD sing 296 n n CM HM3 MPD sing 297 n n C3 C4 MPD sing 298 n n C3 H31 MPD sing 299 n n C3 H32 MPD sing 300 n n C4 O4 MPD sing 301 n n C4 C5 MPD sing 302 n n C4 H4 MPD sing 303 n n O4 HO4 MPD sing 304 n n C5 H51 MPD sing 305 n n C5 H52 MPD sing 306 n n C5 H53 MPD sing 307 n n # _atom_sites.entry_id 2VUG _atom_sites.fract_transf_matrix[1][1] 0.01696 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009685 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006626 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ANP A 1 401 401 ANP ANP . D 3 MPD A 1 501 501 MPD MPD . E 3 MPD A 1 502 502 MPD MPD . F 2 ANP B 1 401 401 ANP ANP . G 3 MPD B 1 501 501 MPD MPD . H 3 MPD B 1 502 502 MPD MPD . I 3 MPD B 1 503 503 MPD MPD . J 4 MRD B 1 504 504 MRD MRD . K 4 MRD B 1 505 505 MRD MRD . L 5 HOH A 1 2001 2001 HOH HOH . L 5 HOH A 2 2002 2002 HOH HOH . L 5 HOH A 3 2003 2003 HOH HOH . M 5 HOH B 1 2001 2001 HOH HOH . M 5 HOH B 2 2002 2002 HOH HOH . M 5 HOH B 3 2003 2003 HOH HOH . M 5 HOH B 4 2004 2004 HOH HOH . M 5 HOH B 5 2005 2005 HOH HOH . M 5 HOH B 6 2006 2006 HOH HOH . M 5 HOH B 7 2007 2007 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MPD . . . D 3 41.277 42.919 34.718 1 74.81 ? C1 MPD 501 A 1 HETATM 2 C C2 MPD . . . D 3 41.646 42.715 36.184 1 74.72 ? C2 MPD 501 A 1 HETATM 3 O O2 MPD . . . D 3 42.336 41.44 36.277 1 74.99 ? O2 MPD 501 A 1 HETATM 4 C CM MPD . . . D 3 40.354 42.666 36.993 1 73.99 ? CM MPD 501 A 1 HETATM 5 C C3 MPD . . . D 3 42.569 43.838 36.687 1 74.46 ? C3 MPD 501 A 1 HETATM 6 C C4 MPD . . . D 3 43.472 43.492 37.884 1 73.78 ? C4 MPD 501 A 1 HETATM 7 O O4 MPD . . . D 3 42.962 42.383 38.602 1 72.72 ? O4 MPD 501 A 1 HETATM 8 C C5 MPD . . . D 3 44.923 43.231 37.466 1 73.05 ? C5 MPD 501 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 8 #