data_2VUG # _model_server_result.job_id 3evd-KdZh2pHBThMRHFcAg _model_server_result.datetime_utc '2024-12-28 21:12:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2vug # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":505}' # _entry.id 2VUG # _exptl.entry_id 2VUG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4R)-2-METHYLPENTANE-2,4-DIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2VUG _cell.length_a 58.962 _cell.length_b 103.257 _cell.length_c 150.93 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2VUG _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 J N N ? 4 K N N # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MRD _chem_comp.mon_nstd_flag . _chem_comp.name (4R)-2-METHYLPENTANE-2,4-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MRD sing 308 n n C1 H1C1 MRD sing 309 n n C1 H1C2 MRD sing 310 n n C1 H1C3 MRD sing 311 n n C2 O2 MRD sing 312 n n C2 CM MRD sing 313 n n C2 C3 MRD sing 314 n n O2 H2 MRD sing 315 n n CM HMC1 MRD sing 316 n n CM HMC2 MRD sing 317 n n CM HMC3 MRD sing 318 n n C3 C4 MRD sing 319 n n C3 H3C1 MRD sing 320 n n C3 H3C2 MRD sing 321 n n C4 O4 MRD sing 322 n n C4 C5 MRD sing 323 n n C4 H4 MRD sing 324 n n O4 HA MRD sing 325 n n C5 H5C1 MRD sing 326 n n C5 H5C2 MRD sing 327 n n C5 H5C3 MRD sing 328 n n # _atom_sites.entry_id 2VUG _atom_sites.fract_transf_matrix[1][1] 0.01696 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009685 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006626 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ANP A 1 401 401 ANP ANP . D 3 MPD A 1 501 501 MPD MPD . E 3 MPD A 1 502 502 MPD MPD . F 2 ANP B 1 401 401 ANP ANP . G 3 MPD B 1 501 501 MPD MPD . H 3 MPD B 1 502 502 MPD MPD . I 3 MPD B 1 503 503 MPD MPD . J 4 MRD B 1 504 504 MRD MRD . K 4 MRD B 1 505 505 MRD MRD . L 5 HOH A 1 2001 2001 HOH HOH . L 5 HOH A 2 2002 2002 HOH HOH . L 5 HOH A 3 2003 2003 HOH HOH . M 5 HOH B 1 2001 2001 HOH HOH . M 5 HOH B 2 2002 2002 HOH HOH . M 5 HOH B 3 2003 2003 HOH HOH . M 5 HOH B 4 2004 2004 HOH HOH . M 5 HOH B 5 2005 2005 HOH HOH . M 5 HOH B 6 2006 2006 HOH HOH . M 5 HOH B 7 2007 2007 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MRD . . . K 4 34.918 30.021 38.067 1 72.3 ? C1 MRD 505 B 1 HETATM 2 C C2 MRD . . . K 4 35.198 28.574 37.685 1 72.96 ? C2 MRD 505 B 1 HETATM 3 O O2 MRD . . . K 4 35.226 28.534 36.232 1 72.9 ? O2 MRD 505 B 1 HETATM 4 C CM MRD . . . K 4 34.094 27.653 38.204 1 72.55 ? CM MRD 505 B 1 HETATM 5 C C3 MRD . . . K 4 36.548 28.147 38.265 1 73.23 ? C3 MRD 505 B 1 HETATM 6 C C4 MRD . . . K 4 37.32 27.191 37.358 1 73.52 ? C4 MRD 505 B 1 HETATM 7 O O4 MRD . . . K 4 37.041 25.864 37.758 1 73.05 ? O4 MRD 505 B 1 HETATM 8 C C5 MRD . . . K 4 38.818 27.491 37.384 1 72.56 ? C5 MRD 505 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 8 #