data_2VV2
#
_model_server_result.job_id            NKUyOQhkyzyXAmq6XR8rAA 
_model_server_result.datetime_utc      '2024-11-27 23:56:13' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2vv2 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1476}' 
#
_entry.id    2VV2 
#
_exptl.entry_id    2VV2 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              318.45 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(5R,6E,8Z,11Z,14Z,17Z)-5-hydroxyicosa-6,8,11,14,17-pentaenoic acid' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          103.65 
_cell.angle_gamma         90 
_cell.entry_id            2VV2 
_cell.length_a            93.781 
_cell.length_b            61.733 
_cell.length_c            120.06 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2VV2 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PQS monomeric 1 author_and_software_defined_assembly 1 
PQS monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,F 1 1 
B,D,E,G 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 E N N 
#
_chem_comp.formula           'C20 H30 O3' 
_chem_comp.formula_weight    318.45 
_chem_comp.id                5HE 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(5R,6E,8Z,11Z,14Z,17Z)-5-hydroxyicosa-6,8,11,14,17-pentaenoic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 5HE sing 1 n n 
C2 C3 5HE sing 2 n n 
C3 C4 5HE doub 3 n n 
C4 C5 5HE sing 4 n n 
C5 C6 5HE sing 5 n n 
C6 C7 5HE doub 6 n n 
C7 C8 5HE sing 7 n n 
C8 C9 5HE sing 8 z n 
C9 C10 5HE doub 9 n n 
C10 C11 5HE sing 10 n n 
C11 C13 5HE sing 11 n n 
C13 C14 5HE doub 12 n n 
C14 C16 5HE sing 13 n n 
C16 C17 5HE doub 14 n n 
C17 C18 5HE sing 15 z n 
C18 C19 5HE sing 16 n n 
C18 O3 5HE sing 17 n n 
C19 C20 5HE sing 18 n n 
C20 C21 5HE sing 19 n n 
C21 C22 5HE sing 20 n n 
C22 O23 5HE sing 21 n n 
C22 O24 5HE doub 22 z n 
C1 H1C1 5HE sing 23 n n 
C1 H1C2 5HE sing 24 n n 
C1 H1C3 5HE sing 25 n n 
C2 H2C1 5HE sing 26 n n 
C2 H2C2 5HE sing 27 n n 
C3 H3 5HE sing 28 n n 
C4 H4 5HE sing 29 z n 
C5 H5C1 5HE sing 30 n n 
C5 H5C2 5HE sing 31 n n 
C6 H6 5HE sing 32 n n 
C7 H7 5HE sing 33 e n 
C8 H8C1 5HE sing 34 n n 
C8 H8C2 5HE sing 35 n n 
C9 H9 5HE sing 36 n n 
C10 H10 5HE sing 37 n n 
C11 H111 5HE sing 38 n n 
C11 H112 5HE sing 39 n n 
C13 H13 5HE sing 40 n n 
C14 H14 5HE sing 41 n n 
C16 H16 5HE sing 42 n n 
C17 H17 5HE sing 43 n n 
C18 H18 5HE sing 44 n n 
C19 H191 5HE sing 45 n n 
C19 H192 5HE sing 46 n n 
O3 HA 5HE sing 47 n n 
C20 H201 5HE sing 48 n n 
C20 H202 5HE sing 49 n n 
C21 H211 5HE sing 50 n n 
C21 H212 5HE sing 51 n n 
O23 H23 5HE sing 52 n n 
#
_atom_sites.entry_id                     2VV2 
_atom_sites.fract_transf_matrix[1][1]    0.010663 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00259 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016199 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008571 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 5HE A 1 1476 1476 5HE 5HE . 
D 2 5HE B 1 1476 1476 5HE 5HE . 
E 2 5HE B 1 1477 1477 5HE 5HE . 
F 3 HOH A 1 2001 2001 HOH HOH . 
F 3 HOH A 2 2002 2002 HOH HOH . 
F 3 HOH A 3 2003 2003 HOH HOH . 
F 3 HOH A 4 2004 2004 HOH HOH . 
F 3 HOH A 5 2005 2005 HOH HOH . 
F 3 HOH A 6 2006 2006 HOH HOH . 
F 3 HOH A 7 2007 2007 HOH HOH . 
F 3 HOH A 8 2008 2008 HOH HOH . 
F 3 HOH A 9 2009 2009 HOH HOH . 
F 3 HOH A 10 2010 2010 HOH HOH . 
F 3 HOH A 11 2011 2011 HOH HOH . 
F 3 HOH A 12 2012 2012 HOH HOH . 
F 3 HOH A 13 2013 2013 HOH HOH . 
F 3 HOH A 14 2014 2014 HOH HOH . 
F 3 HOH A 15 2015 2015 HOH HOH . 
F 3 HOH A 16 2016 2016 HOH HOH . 
F 3 HOH A 17 2017 2017 HOH HOH . 
F 3 HOH A 18 2018 2018 HOH HOH . 
F 3 HOH A 19 2019 2019 HOH HOH . 
F 3 HOH A 20 2020 2020 HOH HOH . 
F 3 HOH A 21 2021 2021 HOH HOH . 
F 3 HOH A 22 2022 2022 HOH HOH . 
F 3 HOH A 23 2023 2023 HOH HOH . 
F 3 HOH A 24 2024 2024 HOH HOH . 
F 3 HOH A 25 2025 2025 HOH HOH . 
F 3 HOH A 26 2026 2026 HOH HOH . 
F 3 HOH A 27 2027 2027 HOH HOH . 
F 3 HOH A 28 2028 2028 HOH HOH . 
F 3 HOH A 29 2029 2029 HOH HOH . 
F 3 HOH A 30 2030 2030 HOH HOH . 
F 3 HOH A 31 2031 2031 HOH HOH . 
F 3 HOH A 32 2032 2032 HOH HOH . 
F 3 HOH A 33 2033 2033 HOH HOH . 
F 3 HOH A 34 2034 2034 HOH HOH . 
F 3 HOH A 35 2035 2035 HOH HOH . 
F 3 HOH A 36 2036 2036 HOH HOH . 
F 3 HOH A 37 2037 2037 HOH HOH . 
F 3 HOH A 38 2038 2038 HOH HOH . 
F 3 HOH A 39 2039 2039 HOH HOH . 
F 3 HOH A 40 2040 2040 HOH HOH . 
F 3 HOH A 41 2041 2041 HOH HOH . 
F 3 HOH A 42 2042 2042 HOH HOH . 
F 3 HOH A 43 2043 2043 HOH HOH . 
F 3 HOH A 44 2044 2044 HOH HOH . 
G 3 HOH B 1 2001 2001 HOH HOH . 
G 3 HOH B 2 2002 2002 HOH HOH . 
G 3 HOH B 3 2003 2003 HOH HOH . 
G 3 HOH B 4 2004 2004 HOH HOH . 
G 3 HOH B 5 2005 2005 HOH HOH . 
G 3 HOH B 6 2006 2006 HOH HOH . 
G 3 HOH B 7 2007 2007 HOH HOH . 
G 3 HOH B 8 2008 2008 HOH HOH . 
G 3 HOH B 9 2009 2009 HOH HOH . 
G 3 HOH B 10 2010 2010 HOH HOH . 
G 3 HOH B 11 2011 2011 HOH HOH . 
G 3 HOH B 12 2012 2012 HOH HOH . 
G 3 HOH B 13 2013 2013 HOH HOH . 
G 3 HOH B 14 2014 2014 HOH HOH . 
G 3 HOH B 15 2015 2015 HOH HOH . 
G 3 HOH B 16 2016 2016 HOH HOH . 
G 3 HOH B 17 2017 2017 HOH HOH . 
G 3 HOH B 18 2018 2018 HOH HOH . 
G 3 HOH B 19 2019 2019 HOH HOH . 
G 3 HOH B 20 2020 2020 HOH HOH . 
G 3 HOH B 21 2021 2021 HOH HOH . 
G 3 HOH B 22 2022 2022 HOH HOH . 
G 3 HOH B 23 2023 2023 HOH HOH . 
G 3 HOH B 24 2024 2024 HOH HOH . 
G 3 HOH B 25 2025 2025 HOH HOH . 
G 3 HOH B 26 2026 2026 HOH HOH . 
G 3 HOH B 27 2027 2027 HOH HOH . 
G 3 HOH B 28 2028 2028 HOH HOH . 
G 3 HOH B 29 2029 2029 HOH HOH . 
G 3 HOH B 30 2030 2030 HOH HOH . 
G 3 HOH B 31 2031 2031 HOH HOH . 
G 3 HOH B 32 2032 2032 HOH HOH . 
G 3 HOH B 33 2033 2033 HOH HOH . 
G 3 HOH B 34 2034 2034 HOH HOH . 
G 3 HOH B 35 2035 2035 HOH HOH . 
G 3 HOH B 36 2036 2036 HOH HOH . 
G 3 HOH B 37 2037 2037 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 5HE . . . C 2 14.432 23.834 8.372 1 68.15 ? C1 5HE 1476 A 1 
HETATM 2 C C2 5HE . . . C 2 15.392 22.675 8.526 1 68.71 ? C2 5HE 1476 A 1 
HETATM 3 C C3 5HE . . . C 2 16.812 23.191 8.511 1 69.15 ? C3 5HE 1476 A 1 
HETATM 4 C C4 5HE . . . C 2 17.805 22.415 8.936 1 69.34 ? C4 5HE 1476 A 1 
HETATM 5 C C5 5HE . . . C 2 17.514 21.019 9.433 1 70.81 ? C5 5HE 1476 A 1 
HETATM 6 C C6 5HE . . . C 2 18.46 20.043 8.776 1 71.56 ? C6 5HE 1476 A 1 
HETATM 7 C C7 5HE . . . C 2 18.492 18.776 9.177 1 72.09 ? C7 5HE 1476 A 1 
HETATM 8 C C8 5HE . . . C 2 17.582 18.312 10.289 1 74.84 ? C8 5HE 1476 A 1 
HETATM 9 C C9 5HE . . . C 2 17.437 16.81 10.228 1 76.53 ? C9 5HE 1476 A 1 
HETATM 10 C C10 5HE . . . C 2 17.337 16.106 11.352 1 79.12 ? C10 5HE 1476 A 1 
HETATM 11 C C11 5HE . . . C 2 17.368 16.809 12.688 1 80.82 ? C11 5HE 1476 A 1 
HETATM 12 C C13 5HE . . . C 2 16.022 16.673 13.359 1 82.69 ? C13 5HE 1476 A 1 
HETATM 13 C C14 5HE . . . C 2 15.917 16.831 14.676 1 82.3 ? C14 5HE 1476 A 1 
HETATM 14 C C16 5HE . . . C 2 17.103 17.135 15.471 1 83.26 ? C16 5HE 1476 A 1 
HETATM 15 C C17 5HE . . . C 2 18.266 16.561 15.177 1 82.7 ? C17 5HE 1476 A 1 
HETATM 16 C C18 5HE . . . C 2 19.493 16.876 16 1 83.5 ? C18 5HE 1476 A 1 
HETATM 17 C C19 5HE . . . C 2 19.1 17.756 17.181 1 83.94 ? C19 5HE 1476 A 1 
HETATM 18 C C20 5HE . . . C 2 20.241 18.688 17.57 1 85.05 ? C20 5HE 1476 A 1 
HETATM 19 C C21 5HE . . . C 2 19.829 19.607 18.714 1 85.87 ? C21 5HE 1476 A 1 
HETATM 20 C C22 5HE . . . C 2 19.893 18.847 20.018 1 87.93 ? C22 5HE 1476 A 1 
HETATM 21 O O23 5HE . . . C 2 19.136 17.864 20.173 1 87.54 ? O23 5HE 1476 A 1 
HETATM 22 O O24 5HE . . . C 2 20.701 19.229 20.892 1 87.94 ? O24 5HE 1476 A 1 
HETATM 23 O O3 5HE . . . C 2 20.069 15.658 16.483 1 82.9 ? O3 5HE 1476 A 1 
#
_model_server_stats.io_time_ms              54 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           340 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           23 
#