data_2VV3
#
_model_server_result.job_id            yjDO4nD6WPbCIl_tgAFMsA 
_model_server_result.datetime_utc      '2024-11-27 03:20:50' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2vv3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1476}' 
#
_entry.id    2VV3 
#
_exptl.entry_id    2VV3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              344.488 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(6E,10Z,13Z,16Z,19Z)-4-oxodocosa-6,10,13,16,19-pentaenoic acid' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          103.18 
_cell.angle_gamma         90 
_cell.entry_id            2VV3 
_cell.length_a            94.04 
_cell.length_b            61.75 
_cell.length_c            119.48 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2VV3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PQS monomeric 1 author_and_software_defined_assembly 1 
PQS monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D 1 1 
B,E 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_struct_conn.conn_type_id                   covale 
_struct_conn.details                        ? 
_struct_conn.id                             covale1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            SG 
_struct_conn.ptnr1_label_comp_id            CYS 
_struct_conn.ptnr1_label_seq_id             84 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             CYS 
_struct_conn.ptnr1_auth_seq_id              285 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            C 
_struct_conn.ptnr2_label_atom_id            C8 
_struct_conn.ptnr2_label_comp_id            4R8 
_struct_conn.ptnr2_label_seq_id             . 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             4R8 
_struct_conn.ptnr2_auth_seq_id              1476 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                1.757 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C22 H32 O3' 
_chem_comp.formula_weight    344.488 
_chem_comp.id                4R8 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(6E,10Z,13Z,16Z,19Z)-4-oxodocosa-6,10,13,16,19-pentaenoic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     '4-OXODOCOSAHEXAENOIC ACID' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C22 C21 4R8 sing 1 n n 
C21 C20 4R8 sing 2 n n 
C20 C19 4R8 doub 3 n n 
C19 C18 4R8 sing 4 n n 
C18 C17 4R8 sing 5 n n 
C17 C16 4R8 doub 6 n n 
C16 C15 4R8 sing 7 n n 
C15 C14 4R8 sing 8 z n 
C14 C13 4R8 doub 9 n n 
C13 C12 4R8 sing 10 n n 
C12 C11 4R8 sing 11 n n 
C11 C10 4R8 doub 12 n n 
C10 C9 4R8 sing 13 n n 
C9 C8 4R8 sing 14 n n 
C8 C7 4R8 sing 15 z n 
C7 C6 4R8 doub 16 n n 
C6 C5 4R8 sing 17 n n 
C5 C4 4R8 sing 18 n n 
C4 O3 4R8 doub 19 n n 
C4 C3 4R8 sing 20 n n 
C3 C2 4R8 sing 21 n n 
C2 C1 4R8 sing 22 z n 
C1 O1 4R8 doub 23 n n 
C1 O2 4R8 sing 24 n n 
C22 H221 4R8 sing 25 n n 
C22 H222 4R8 sing 26 n n 
C22 H223 4R8 sing 27 n n 
C21 H211 4R8 sing 28 n n 
C21 H212 4R8 sing 29 z n 
C20 H20 4R8 sing 30 n n 
C19 H19 4R8 sing 31 n n 
C18 H181 4R8 sing 32 n n 
C18 H182 4R8 sing 33 n n 
C17 H17 4R8 sing 34 n n 
C16 H16 4R8 sing 35 n n 
C15 H151 4R8 sing 36 n n 
C15 H152 4R8 sing 37 n n 
C14 H14 4R8 sing 38 n n 
C13 H13 4R8 sing 39 e n 
C12 H121 4R8 sing 40 n n 
C12 H122 4R8 sing 41 n n 
C11 H11 4R8 sing 42 n n 
C10 H10 4R8 sing 43 n n 
C9 H9C1 4R8 sing 44 n n 
C9 H9C2 4R8 sing 45 n n 
C8 H8 4R8 sing 46 n n 
C8 HOT 4R8 sing 47 n n 
C7 H7 4R8 sing 48 n n 
C6 H6 4R8 sing 49 n n 
C5 H5C1 4R8 sing 50 n n 
C5 H5C2 4R8 sing 51 n n 
C3 H3C1 4R8 sing 52 n n 
C3 H3C2 4R8 sing 53 n n 
C2 H2C1 4R8 sing 54 n n 
C2 H2C2 4R8 sing 55 n n 
O2 H2 4R8 sing 56 n n 
#
_atom_sites.entry_id                     2VV3 
_atom_sites.fract_transf_matrix[1][1]    0.010634 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00249 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016194 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008596 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 4R8 A 1 1476 1476 4R8 4R8 . 
D 3 HOH A 1 2001 2001 HOH HOH . 
D 3 HOH A 2 2002 2002 HOH HOH . 
D 3 HOH A 3 2003 2003 HOH HOH . 
D 3 HOH A 4 2004 2004 HOH HOH . 
D 3 HOH A 5 2005 2005 HOH HOH . 
D 3 HOH A 6 2006 2006 HOH HOH . 
D 3 HOH A 7 2007 2007 HOH HOH . 
D 3 HOH A 8 2008 2008 HOH HOH . 
D 3 HOH A 9 2009 2009 HOH HOH . 
D 3 HOH A 10 2010 2010 HOH HOH . 
D 3 HOH A 11 2011 2011 HOH HOH . 
D 3 HOH A 12 2012 2012 HOH HOH . 
D 3 HOH A 13 2013 2013 HOH HOH . 
D 3 HOH A 14 2014 2014 HOH HOH . 
D 3 HOH A 15 2015 2015 HOH HOH . 
D 3 HOH A 16 2016 2016 HOH HOH . 
D 3 HOH A 17 2017 2017 HOH HOH . 
D 3 HOH A 18 2018 2018 HOH HOH . 
D 3 HOH A 19 2019 2019 HOH HOH . 
D 3 HOH A 20 2020 2020 HOH HOH . 
D 3 HOH A 21 2021 2021 HOH HOH . 
D 3 HOH A 22 2022 2022 HOH HOH . 
D 3 HOH A 23 2023 2023 HOH HOH . 
D 3 HOH A 24 2024 2024 HOH HOH . 
D 3 HOH A 25 2025 2025 HOH HOH . 
D 3 HOH A 26 2026 2026 HOH HOH . 
D 3 HOH A 27 2027 2027 HOH HOH . 
D 3 HOH A 28 2028 2028 HOH HOH . 
D 3 HOH A 29 2029 2029 HOH HOH . 
D 3 HOH A 30 2030 2030 HOH HOH . 
D 3 HOH A 31 2031 2031 HOH HOH . 
D 3 HOH A 32 2032 2032 HOH HOH . 
D 3 HOH A 33 2033 2033 HOH HOH . 
D 3 HOH A 34 2034 2034 HOH HOH . 
D 3 HOH A 35 2035 2035 HOH HOH . 
D 3 HOH A 36 2036 2036 HOH HOH . 
D 3 HOH A 37 2037 2037 HOH HOH . 
D 3 HOH A 38 2038 2038 HOH HOH . 
D 3 HOH A 39 2039 2039 HOH HOH . 
D 3 HOH A 40 2040 2040 HOH HOH . 
D 3 HOH A 41 2041 2041 HOH HOH . 
D 3 HOH A 42 2042 2042 HOH HOH . 
D 3 HOH A 43 2043 2043 HOH HOH . 
D 3 HOH A 44 2044 2044 HOH HOH . 
E 3 HOH B 1 2001 2001 HOH HOH . 
E 3 HOH B 2 2002 2002 HOH HOH . 
E 3 HOH B 3 2003 2003 HOH HOH . 
E 3 HOH B 4 2004 2004 HOH HOH . 
E 3 HOH B 5 2005 2005 HOH HOH . 
E 3 HOH B 6 2006 2006 HOH HOH . 
E 3 HOH B 7 2007 2007 HOH HOH . 
E 3 HOH B 8 2008 2008 HOH HOH . 
E 3 HOH B 9 2009 2009 HOH HOH . 
E 3 HOH B 10 2010 2010 HOH HOH . 
E 3 HOH B 11 2011 2011 HOH HOH . 
E 3 HOH B 12 2012 2012 HOH HOH . 
E 3 HOH B 13 2013 2013 HOH HOH . 
E 3 HOH B 14 2014 2014 HOH HOH . 
E 3 HOH B 15 2015 2015 HOH HOH . 
E 3 HOH B 16 2016 2016 HOH HOH . 
E 3 HOH B 17 2017 2017 HOH HOH . 
E 3 HOH B 18 2018 2018 HOH HOH . 
E 3 HOH B 19 2019 2019 HOH HOH . 
E 3 HOH B 20 2020 2020 HOH HOH . 
E 3 HOH B 21 2021 2021 HOH HOH . 
E 3 HOH B 22 2022 2022 HOH HOH . 
E 3 HOH B 23 2023 2023 HOH HOH . 
E 3 HOH B 24 2024 2024 HOH HOH . 
E 3 HOH B 25 2025 2025 HOH HOH . 
E 3 HOH B 26 2026 2026 HOH HOH . 
E 3 HOH B 27 2027 2027 HOH HOH . 
E 3 HOH B 28 2028 2028 HOH HOH . 
E 3 HOH B 29 2029 2029 HOH HOH . 
E 3 HOH B 30 2030 2030 HOH HOH . 
E 3 HOH B 31 2031 2031 HOH HOH . 
E 3 HOH B 32 2032 2032 HOH HOH . 
E 3 HOH B 33 2033 2033 HOH HOH . 
E 3 HOH B 34 2034 2034 HOH HOH . 
E 3 HOH B 35 2035 2035 HOH HOH . 
E 3 HOH B 36 2036 2036 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C22 4R8 . . . C 2 14.519 23.924 8.177 1 76.59 ? C22 4R8 1476 A 1 
HETATM 2 C C21 4R8 . . . C 2 15.391 22.868 7.533 1 77.87 ? C21 4R8 1476 A 1 
HETATM 3 C C20 4R8 . . . C 2 16.829 23.088 7.935 1 77.33 ? C20 4R8 1476 A 1 
HETATM 4 C C19 4R8 . . . C 2 17.476 22.156 8.629 1 77.11 ? C19 4R8 1476 A 1 
HETATM 5 C C18 4R8 . . . C 2 16.77 20.877 9.016 1 76.03 ? C18 4R8 1476 A 1 
HETATM 6 C C17 4R8 . . . C 2 15.98 21.102 10.282 1 76.25 ? C17 4R8 1476 A 1 
HETATM 7 C C16 4R8 . . . C 2 14.682 20.815 10.316 1 76.58 ? C16 4R8 1476 A 1 
HETATM 8 C C15 4R8 . . . C 2 13.998 20.265 9.087 1 76.29 ? C15 4R8 1476 A 1 
HETATM 9 C C14 4R8 . . . C 2 13.215 19.028 9.457 1 76.02 ? C14 4R8 1476 A 1 
HETATM 10 C C13 4R8 . . . C 2 13.831 17.852 9.543 1 76 ? C13 4R8 1476 A 1 
HETATM 11 C C12 4R8 . . . C 2 15.313 17.754 9.269 1 75.91 ? C12 4R8 1476 A 1 
HETATM 12 C C11 4R8 . . . C 2 15.892 16.593 10.042 1 75.09 ? C11 4R8 1476 A 1 
HETATM 13 C C10 4R8 . . . C 2 16.902 16.793 10.885 1 73.84 ? C10 4R8 1476 A 1 
HETATM 14 C C9 4R8 . . . C 2 17.469 18.18 11.069 1 73.67 ? C9 4R8 1476 A 1 
HETATM 15 C C8 4R8 . . . C 2 18.623 18.129 12.062 1 73.05 ? C8 4R8 1476 A 1 
HETATM 16 C C7 4R8 . . . C 2 18.127 17.59 13.383 1 73.22 ? C7 4R8 1476 A 1 
HETATM 17 C C6 4R8 . . . C 2 18.97 16.98 14.211 1 73.49 ? C6 4R8 1476 A 1 
HETATM 18 C C5 4R8 . . . C 2 18.474 16.441 15.531 1 73.81 ? C5 4R8 1476 A 1 
HETATM 19 C C4 4R8 . . . C 2 19.513 16.688 16.599 1 74.62 ? C4 4R8 1476 A 1 
HETATM 20 O O3 4R8 . . . C 2 20.333 15.825 16.867 1 75.59 ? O3 4R8 1476 A 1 
HETATM 21 C C3 4R8 . . . C 2 19.533 18.008 17.332 1 74.24 ? C3 4R8 1476 A 1 
HETATM 22 C C2 4R8 . . . C 2 18.517 17.974 18.467 1 74.41 ? C2 4R8 1476 A 1 
HETATM 23 C C1 4R8 . . . C 2 19.14 18.549 19.717 1 74.32 ? C1 4R8 1476 A 1 
HETATM 24 O O1 4R8 . . . C 2 20.309 18.987 19.654 1 76.04 ? O1 4R8 1476 A 1 
HETATM 25 O O2 4R8 . . . C 2 18.463 18.565 20.768 1 73.77 ? O2 4R8 1476 A 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           265 
_model_server_stats.encode_time_ms          19 
_model_server_stats.element_count           25 
#