data_2VV4
#
_model_server_result.job_id            QhwWEQE1xn3dHs16KNBxgg 
_model_server_result.datetime_utc      '2024-11-13 17:22:23' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2vv4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1475}' 
#
_entry.id    2VV4 
#
_exptl.entry_id    2VV4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              310.428 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(8E,10S,12Z)-10-hydroxy-6-oxooctadeca-8,12-dienoic acid' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          103.64 
_cell.angle_gamma         90 
_cell.entry_id            2VV4 
_cell.length_a            93.78 
_cell.length_b            61.58 
_cell.length_c            118.77 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2VV4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PQS monomeric 1 author_and_software_defined_assembly 1 
PQS monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1 
B,D,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 84 A CYS 285 1_555 C C8 6OC . A 6OC 1476 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.823 ? 
covale ? covale2 B SG CYS 84 B CYS 285 1_555 D C10 6OB . B 6OB 1475 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.781 ? 
#
_chem_comp.formula           'C18 H30 O4' 
_chem_comp.formula_weight    310.428 
_chem_comp.id                6OB 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(8E,10S,12Z)-10-hydroxy-6-oxooctadeca-8,12-dienoic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C10 C11 6OB sing 1 n n 
C10 C9 6OB sing 2 n n 
C18 C17 6OB sing 3 n n 
C17 C16 6OB sing 4 n n 
C16 C15 6OB sing 5 n n 
C15 C14 6OB sing 6 n n 
C14 C13 6OB sing 7 n n 
C13 C12 6OB doub 8 n n 
C12 C11 6OB sing 9 n n 
C9 C8 6OB doub 10 n n 
C8 C7 6OB sing 11 n n 
C7 C6 6OB sing 12 n n 
C6 O3 6OB doub 13 n n 
C6 C5 6OB sing 14 n n 
C5 C4 6OB sing 15 n n 
C4 C3 6OB sing 16 n n 
C3 C2 6OB sing 17 n n 
C2 C1 6OB sing 18 n n 
C1 O1 6OB doub 19 n n 
C1 O2 6OB sing 20 z n 
C10 H10 6OB sing 21 n n 
C11 H111 6OB sing 22 n n 
C11 H112 6OB sing 23 n n 
C9 H9 6OB sing 24 n n 
C18 H181 6OB sing 25 n n 
C18 H182 6OB sing 26 e n 
C18 H183 6OB sing 27 n n 
C17 H171 6OB sing 28 n n 
C17 H172 6OB sing 29 n n 
C16 H161 6OB sing 30 n n 
C16 H162 6OB sing 31 n n 
C15 H151 6OB sing 32 n n 
C15 H152 6OB sing 33 n n 
C14 H141 6OB sing 34 n n 
C14 H142 6OB sing 35 n n 
C13 H13 6OB sing 36 n n 
C12 H12 6OB sing 37 n n 
C8 HA 6OB sing 38 n n 
C7 HA1 6OB sing 39 n n 
C7 HB2 6OB sing 40 n n 
C5 HB1 6OB sing 41 n n 
C5 HC2 6OB sing 42 n n 
C4 HC1 6OB sing 43 n n 
C4 HD2 6OB sing 44 n n 
C3 HD1 6OB sing 45 n n 
C3 HE2 6OB sing 46 n n 
C2 HE1 6OB sing 47 n n 
C2 HF2 6OB sing 48 n n 
O2 HB 6OB sing 49 n n 
OXT HOT 6OB sing 50 n n 
OXT C10 6OB sing 51 n n 
#
_atom_sites.entry_id                     2VV4 
_atom_sites.fract_transf_matrix[1][1]    0.010663 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002588 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016239 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008664 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 6OC A 1 1476 1476 6OC 6OC . 
D 4 6OB B 1 1475 1475 6OB 6OB . 
E 5 HOH A 1 2001 2001 HOH HOH . 
E 5 HOH A 2 2002 2002 HOH HOH . 
E 5 HOH A 3 2003 2003 HOH HOH . 
E 5 HOH A 4 2004 2004 HOH HOH . 
E 5 HOH A 5 2005 2005 HOH HOH . 
E 5 HOH A 6 2006 2006 HOH HOH . 
E 5 HOH A 7 2007 2007 HOH HOH . 
E 5 HOH A 8 2008 2008 HOH HOH . 
E 5 HOH A 9 2009 2009 HOH HOH . 
E 5 HOH A 10 2010 2010 HOH HOH . 
E 5 HOH A 11 2011 2011 HOH HOH . 
E 5 HOH A 12 2012 2012 HOH HOH . 
E 5 HOH A 13 2013 2013 HOH HOH . 
E 5 HOH A 14 2014 2014 HOH HOH . 
E 5 HOH A 15 2015 2015 HOH HOH . 
E 5 HOH A 16 2016 2016 HOH HOH . 
E 5 HOH A 17 2017 2017 HOH HOH . 
E 5 HOH A 18 2018 2018 HOH HOH . 
E 5 HOH A 19 2019 2019 HOH HOH . 
E 5 HOH A 20 2020 2020 HOH HOH . 
E 5 HOH A 21 2021 2021 HOH HOH . 
E 5 HOH A 22 2022 2022 HOH HOH . 
E 5 HOH A 23 2023 2023 HOH HOH . 
E 5 HOH A 24 2024 2024 HOH HOH . 
E 5 HOH A 25 2025 2025 HOH HOH . 
E 5 HOH A 26 2026 2026 HOH HOH . 
E 5 HOH A 27 2027 2027 HOH HOH . 
E 5 HOH A 28 2028 2028 HOH HOH . 
E 5 HOH A 29 2029 2029 HOH HOH . 
E 5 HOH A 30 2030 2030 HOH HOH . 
E 5 HOH A 31 2031 2031 HOH HOH . 
E 5 HOH A 32 2032 2032 HOH HOH . 
E 5 HOH A 33 2033 2033 HOH HOH . 
E 5 HOH A 34 2034 2034 HOH HOH . 
E 5 HOH A 35 2035 2035 HOH HOH . 
E 5 HOH A 36 2036 2036 HOH HOH . 
E 5 HOH A 37 2037 2037 HOH HOH . 
E 5 HOH A 38 2038 2038 HOH HOH . 
E 5 HOH A 39 2039 2039 HOH HOH . 
E 5 HOH A 40 2040 2040 HOH HOH . 
E 5 HOH A 41 2041 2041 HOH HOH . 
E 5 HOH A 42 2042 2042 HOH HOH . 
E 5 HOH A 43 2043 2043 HOH HOH . 
E 5 HOH A 44 2044 2044 HOH HOH . 
E 5 HOH A 45 2045 2045 HOH HOH . 
E 5 HOH A 46 2046 2046 HOH HOH . 
E 5 HOH A 47 2047 2047 HOH HOH . 
E 5 HOH A 48 2048 2048 HOH HOH . 
E 5 HOH A 49 2049 2049 HOH HOH . 
E 5 HOH A 50 2050 2050 HOH HOH . 
E 5 HOH A 51 2051 2051 HOH HOH . 
E 5 HOH A 52 2052 2052 HOH HOH . 
E 5 HOH A 53 2053 2053 HOH HOH . 
E 5 HOH A 54 2054 2054 HOH HOH . 
E 5 HOH A 55 2055 2055 HOH HOH . 
E 5 HOH A 56 2056 2056 HOH HOH . 
E 5 HOH A 57 2057 2057 HOH HOH . 
E 5 HOH A 58 2058 2058 HOH HOH . 
E 5 HOH A 59 2059 2059 HOH HOH . 
E 5 HOH A 60 2060 2060 HOH HOH . 
E 5 HOH A 61 2061 2061 HOH HOH . 
E 5 HOH A 62 2062 2062 HOH HOH . 
E 5 HOH A 63 2063 2063 HOH HOH . 
E 5 HOH A 64 2064 2064 HOH HOH . 
E 5 HOH A 65 2065 2065 HOH HOH . 
E 5 HOH A 66 2066 2066 HOH HOH . 
E 5 HOH A 67 2067 2067 HOH HOH . 
E 5 HOH A 68 2068 2068 HOH HOH . 
E 5 HOH A 69 2069 2069 HOH HOH . 
E 5 HOH A 70 2070 2070 HOH HOH . 
E 5 HOH A 71 2071 2071 HOH HOH . 
E 5 HOH A 72 2072 2072 HOH HOH . 
E 5 HOH A 73 2073 2073 HOH HOH . 
E 5 HOH A 74 2074 2074 HOH HOH . 
F 5 HOH B 1 2001 2001 HOH HOH . 
F 5 HOH B 2 2002 2002 HOH HOH . 
F 5 HOH B 3 2003 2003 HOH HOH . 
F 5 HOH B 4 2004 2004 HOH HOH . 
F 5 HOH B 5 2005 2005 HOH HOH . 
F 5 HOH B 6 2006 2006 HOH HOH . 
F 5 HOH B 7 2007 2007 HOH HOH . 
F 5 HOH B 8 2008 2008 HOH HOH . 
F 5 HOH B 9 2009 2009 HOH HOH . 
F 5 HOH B 10 2010 2010 HOH HOH . 
F 5 HOH B 11 2011 2011 HOH HOH . 
F 5 HOH B 12 2012 2012 HOH HOH . 
F 5 HOH B 13 2013 2013 HOH HOH . 
F 5 HOH B 14 2014 2014 HOH HOH . 
F 5 HOH B 15 2015 2015 HOH HOH . 
F 5 HOH B 16 2016 2016 HOH HOH . 
F 5 HOH B 17 2017 2017 HOH HOH . 
F 5 HOH B 18 2018 2018 HOH HOH . 
F 5 HOH B 19 2019 2019 HOH HOH . 
F 5 HOH B 20 2020 2020 HOH HOH . 
F 5 HOH B 21 2021 2021 HOH HOH . 
F 5 HOH B 22 2022 2022 HOH HOH . 
F 5 HOH B 23 2023 2023 HOH HOH . 
F 5 HOH B 24 2024 2024 HOH HOH . 
F 5 HOH B 25 2025 2025 HOH HOH . 
F 5 HOH B 26 2026 2026 HOH HOH . 
F 5 HOH B 27 2027 2027 HOH HOH . 
F 5 HOH B 28 2028 2028 HOH HOH . 
F 5 HOH B 29 2029 2029 HOH HOH . 
F 5 HOH B 30 2030 2030 HOH HOH . 
F 5 HOH B 31 2031 2031 HOH HOH . 
F 5 HOH B 32 2032 2032 HOH HOH . 
F 5 HOH B 33 2033 2033 HOH HOH . 
F 5 HOH B 34 2034 2034 HOH HOH . 
F 5 HOH B 35 2035 2035 HOH HOH . 
F 5 HOH B 36 2036 2036 HOH HOH . 
F 5 HOH B 37 2037 2037 HOH HOH . 
F 5 HOH B 38 2038 2038 HOH HOH . 
F 5 HOH B 39 2039 2039 HOH HOH . 
F 5 HOH B 40 2040 2040 HOH HOH . 
F 5 HOH B 41 2041 2041 HOH HOH . 
F 5 HOH B 42 2042 2042 HOH HOH . 
F 5 HOH B 43 2043 2043 HOH HOH . 
F 5 HOH B 44 2044 2044 HOH HOH . 
F 5 HOH B 45 2045 2045 HOH HOH . 
F 5 HOH B 46 2046 2046 HOH HOH . 
F 5 HOH B 47 2047 2047 HOH HOH . 
F 5 HOH B 48 2048 2048 HOH HOH . 
F 5 HOH B 49 2049 2049 HOH HOH . 
F 5 HOH B 50 2050 2050 HOH HOH . 
F 5 HOH B 51 2051 2051 HOH HOH . 
F 5 HOH B 52 2052 2052 HOH HOH . 
F 5 HOH B 53 2053 2053 HOH HOH . 
F 5 HOH B 54 2054 2054 HOH HOH . 
F 5 HOH B 55 2055 2055 HOH HOH . 
F 5 HOH B 56 2056 2056 HOH HOH . 
F 5 HOH B 57 2057 2057 HOH HOH . 
F 5 HOH B 58 2058 2058 HOH HOH . 
F 5 HOH B 59 2059 2059 HOH HOH . 
F 5 HOH B 60 2060 2060 HOH HOH . 
F 5 HOH B 61 2061 2061 HOH HOH . 
F 5 HOH B 62 2062 2062 HOH HOH . 
F 5 HOH B 63 2063 2063 HOH HOH . 
F 5 HOH B 64 2064 2064 HOH HOH . 
F 5 HOH B 65 2065 2065 HOH HOH . 
F 5 HOH B 66 2066 2066 HOH HOH . 
F 5 HOH B 67 2067 2067 HOH HOH . 
F 5 HOH B 68 2068 2068 HOH HOH . 
F 5 HOH B 69 2069 2069 HOH HOH . 
F 5 HOH B 70 2070 2070 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C10 6OB . . . D 4 37.277 -8.102 39.963 1 63.04 ? C10 6OB 1475 B 1 
HETATM 2 C C18 6OB . . . D 4 41.798 -10.313 45.494 1 67.93 ? C18 6OB 1475 B 1 
HETATM 3 C C17 6OB . . . D 4 41.418 -9.011 44.822 1 68.09 ? C17 6OB 1475 B 1 
HETATM 4 C C16 6OB . . . D 4 40.604 -9.267 43.56 1 68.79 ? C16 6OB 1475 B 1 
HETATM 5 C C15 6OB . . . D 4 39.137 -9.509 43.895 1 69.17 ? C15 6OB 1475 B 1 
HETATM 6 C C14 6OB . . . D 4 38.278 -8.321 43.48 1 68.99 ? C14 6OB 1475 B 1 
HETATM 7 C C13 6OB . . . D 4 36.862 -8.786 43.233 1 68.72 ? C13 6OB 1475 B 1 
HETATM 8 C C12 6OB . . . D 4 36.19 -8.338 42.177 1 67.29 ? C12 6OB 1475 B 1 
HETATM 9 C C11 6OB . . . D 4 36.842 -7.364 41.224 1 65.12 ? C11 6OB 1475 B 1 
HETATM 10 C C9 6OB . . . D 4 36.057 -8.535 39.187 1 64.85 ? C9 6OB 1475 B 1 
HETATM 11 C C8 6OB . . . D 4 36.19 -9.017 37.954 1 65.25 ? C8 6OB 1475 B 1 
HETATM 12 C C7 6OB . . . D 4 34.97 -9.45 37.177 1 65.92 ? C7 6OB 1475 B 1 
HETATM 13 C C6 6OB . . . D 4 35.131 -10.89 36.749 1 65.99 ? C6 6OB 1475 B 1 
HETATM 14 O O3 6OB . . . D 4 36.012 -11.201 35.965 1 66 ? O3 6OB 1475 B 1 
HETATM 15 C C5 6OB . . . D 4 34.196 -11.941 37.296 1 65.16 ? C5 6OB 1475 B 1 
HETATM 16 C C4 6OB . . . D 4 33.904 -12.974 36.213 1 63.25 ? C4 6OB 1475 B 1 
HETATM 17 C C3 6OB . . . D 4 32.428 -13.355 36.207 1 62.57 ? C3 6OB 1475 B 1 
HETATM 18 C C2 6OB . . . D 4 31.971 -13.792 37.593 1 63.8 ? C2 6OB 1475 B 1 
HETATM 19 C C1 6OB . . . D 4 32.884 -14.88 38.105 1 64.29 ? C1 6OB 1475 B 1 
HETATM 20 O O1 6OB . . . D 4 33.927 -14.549 38.708 1 63.53 ? O1 6OB 1475 B 1 
HETATM 21 O O2 6OB . . . D 4 32.561 -16.072 37.905 1 64.85 ? O2 6OB 1475 B 1 
#
_model_server_stats.io_time_ms              57 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           291 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           21 
#