data_2VV4
#
_model_server_result.job_id            rVr44kc_bV_-DAwAxp5VHQ 
_model_server_result.datetime_utc      '2024-11-24 07:27:07' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2vv4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1476}' 
#
_entry.id    2VV4 
#
_exptl.entry_id    2VV4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              310.428 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(8R,9Z,12Z)-8-hydroxy-6-oxooctadeca-9,12-dienoic acid' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          103.64 
_cell.angle_gamma         90 
_cell.entry_id            2VV4 
_cell.length_a            93.78 
_cell.length_b            61.58 
_cell.length_c            118.77 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2VV4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PQS monomeric 1 author_and_software_defined_assembly 1 
PQS monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1 
B,D,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 84 A CYS 285 1_555 C C8 6OC . A 6OC 1476 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.823 ? 
covale ? covale2 B SG CYS 84 B CYS 285 1_555 D C10 6OB . B 6OB 1475 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.781 ? 
#
_chem_comp.formula           'C18 H30 O4' 
_chem_comp.formula_weight    310.428 
_chem_comp.id                6OC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(8R,9Z,12Z)-8-hydroxy-6-oxooctadeca-9,12-dienoic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C18 C17 6OC sing 52 n n 
C17 C16 6OC sing 53 n n 
C16 C15 6OC sing 54 n n 
C15 C14 6OC sing 55 n n 
C14 C13 6OC sing 56 n n 
C13 C12 6OC doub 57 n n 
C12 C11 6OC sing 58 n n 
C11 C10 6OC sing 59 n n 
C10 C9 6OC doub 60 n n 
C9 C8 6OC sing 61 n n 
C8 C7 6OC sing 62 n n 
C7 C6 6OC sing 63 n n 
C6 O3 6OC doub 64 n n 
C6 C5 6OC sing 65 n n 
C5 C4 6OC sing 66 n n 
C4 C3 6OC sing 67 n n 
C3 C2 6OC sing 68 z n 
C2 C1 6OC sing 69 n n 
C1 O1 6OC doub 70 n n 
C1 O2 6OC sing 71 n n 
C18 H181 6OC sing 72 n n 
C18 H182 6OC sing 73 n n 
C18 H183 6OC sing 74 n n 
C17 H171 6OC sing 75 z n 
C17 H172 6OC sing 76 n n 
C16 H161 6OC sing 77 n n 
C16 H162 6OC sing 78 n n 
C15 H151 6OC sing 79 n n 
C15 H152 6OC sing 80 n n 
C14 H141 6OC sing 81 n n 
C14 H142 6OC sing 82 n n 
C13 H13 6OC sing 83 n n 
C12 H12 6OC sing 84 n n 
C11 H111 6OC sing 85 n n 
C11 H112 6OC sing 86 n n 
C10 H10 6OC sing 87 n n 
C9 H9 6OC sing 88 n n 
C8 H8 6OC sing 89 n n 
C7 H7C1 6OC sing 90 n n 
C7 H7C2 6OC sing 91 n n 
C5 H5C1 6OC sing 92 n n 
C5 H5C2 6OC sing 93 n n 
C4 H4C1 6OC sing 94 n n 
C4 H4C2 6OC sing 95 n n 
C3 H3C1 6OC sing 96 n n 
C3 H3C2 6OC sing 97 n n 
C2 H2C1 6OC sing 98 n n 
C2 H2C2 6OC sing 99 n n 
O2 H2 6OC sing 100 n n 
OXT HOT1 6OC sing 101 n n 
OXT C8 6OC sing 102 n n 
#
_atom_sites.entry_id                     2VV4 
_atom_sites.fract_transf_matrix[1][1]    0.010663 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002588 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016239 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008664 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 6OC A 1 1476 1476 6OC 6OC . 
D 4 6OB B 1 1475 1475 6OB 6OB . 
E 5 HOH A 1 2001 2001 HOH HOH . 
E 5 HOH A 2 2002 2002 HOH HOH . 
E 5 HOH A 3 2003 2003 HOH HOH . 
E 5 HOH A 4 2004 2004 HOH HOH . 
E 5 HOH A 5 2005 2005 HOH HOH . 
E 5 HOH A 6 2006 2006 HOH HOH . 
E 5 HOH A 7 2007 2007 HOH HOH . 
E 5 HOH A 8 2008 2008 HOH HOH . 
E 5 HOH A 9 2009 2009 HOH HOH . 
E 5 HOH A 10 2010 2010 HOH HOH . 
E 5 HOH A 11 2011 2011 HOH HOH . 
E 5 HOH A 12 2012 2012 HOH HOH . 
E 5 HOH A 13 2013 2013 HOH HOH . 
E 5 HOH A 14 2014 2014 HOH HOH . 
E 5 HOH A 15 2015 2015 HOH HOH . 
E 5 HOH A 16 2016 2016 HOH HOH . 
E 5 HOH A 17 2017 2017 HOH HOH . 
E 5 HOH A 18 2018 2018 HOH HOH . 
E 5 HOH A 19 2019 2019 HOH HOH . 
E 5 HOH A 20 2020 2020 HOH HOH . 
E 5 HOH A 21 2021 2021 HOH HOH . 
E 5 HOH A 22 2022 2022 HOH HOH . 
E 5 HOH A 23 2023 2023 HOH HOH . 
E 5 HOH A 24 2024 2024 HOH HOH . 
E 5 HOH A 25 2025 2025 HOH HOH . 
E 5 HOH A 26 2026 2026 HOH HOH . 
E 5 HOH A 27 2027 2027 HOH HOH . 
E 5 HOH A 28 2028 2028 HOH HOH . 
E 5 HOH A 29 2029 2029 HOH HOH . 
E 5 HOH A 30 2030 2030 HOH HOH . 
E 5 HOH A 31 2031 2031 HOH HOH . 
E 5 HOH A 32 2032 2032 HOH HOH . 
E 5 HOH A 33 2033 2033 HOH HOH . 
E 5 HOH A 34 2034 2034 HOH HOH . 
E 5 HOH A 35 2035 2035 HOH HOH . 
E 5 HOH A 36 2036 2036 HOH HOH . 
E 5 HOH A 37 2037 2037 HOH HOH . 
E 5 HOH A 38 2038 2038 HOH HOH . 
E 5 HOH A 39 2039 2039 HOH HOH . 
E 5 HOH A 40 2040 2040 HOH HOH . 
E 5 HOH A 41 2041 2041 HOH HOH . 
E 5 HOH A 42 2042 2042 HOH HOH . 
E 5 HOH A 43 2043 2043 HOH HOH . 
E 5 HOH A 44 2044 2044 HOH HOH . 
E 5 HOH A 45 2045 2045 HOH HOH . 
E 5 HOH A 46 2046 2046 HOH HOH . 
E 5 HOH A 47 2047 2047 HOH HOH . 
E 5 HOH A 48 2048 2048 HOH HOH . 
E 5 HOH A 49 2049 2049 HOH HOH . 
E 5 HOH A 50 2050 2050 HOH HOH . 
E 5 HOH A 51 2051 2051 HOH HOH . 
E 5 HOH A 52 2052 2052 HOH HOH . 
E 5 HOH A 53 2053 2053 HOH HOH . 
E 5 HOH A 54 2054 2054 HOH HOH . 
E 5 HOH A 55 2055 2055 HOH HOH . 
E 5 HOH A 56 2056 2056 HOH HOH . 
E 5 HOH A 57 2057 2057 HOH HOH . 
E 5 HOH A 58 2058 2058 HOH HOH . 
E 5 HOH A 59 2059 2059 HOH HOH . 
E 5 HOH A 60 2060 2060 HOH HOH . 
E 5 HOH A 61 2061 2061 HOH HOH . 
E 5 HOH A 62 2062 2062 HOH HOH . 
E 5 HOH A 63 2063 2063 HOH HOH . 
E 5 HOH A 64 2064 2064 HOH HOH . 
E 5 HOH A 65 2065 2065 HOH HOH . 
E 5 HOH A 66 2066 2066 HOH HOH . 
E 5 HOH A 67 2067 2067 HOH HOH . 
E 5 HOH A 68 2068 2068 HOH HOH . 
E 5 HOH A 69 2069 2069 HOH HOH . 
E 5 HOH A 70 2070 2070 HOH HOH . 
E 5 HOH A 71 2071 2071 HOH HOH . 
E 5 HOH A 72 2072 2072 HOH HOH . 
E 5 HOH A 73 2073 2073 HOH HOH . 
E 5 HOH A 74 2074 2074 HOH HOH . 
F 5 HOH B 1 2001 2001 HOH HOH . 
F 5 HOH B 2 2002 2002 HOH HOH . 
F 5 HOH B 3 2003 2003 HOH HOH . 
F 5 HOH B 4 2004 2004 HOH HOH . 
F 5 HOH B 5 2005 2005 HOH HOH . 
F 5 HOH B 6 2006 2006 HOH HOH . 
F 5 HOH B 7 2007 2007 HOH HOH . 
F 5 HOH B 8 2008 2008 HOH HOH . 
F 5 HOH B 9 2009 2009 HOH HOH . 
F 5 HOH B 10 2010 2010 HOH HOH . 
F 5 HOH B 11 2011 2011 HOH HOH . 
F 5 HOH B 12 2012 2012 HOH HOH . 
F 5 HOH B 13 2013 2013 HOH HOH . 
F 5 HOH B 14 2014 2014 HOH HOH . 
F 5 HOH B 15 2015 2015 HOH HOH . 
F 5 HOH B 16 2016 2016 HOH HOH . 
F 5 HOH B 17 2017 2017 HOH HOH . 
F 5 HOH B 18 2018 2018 HOH HOH . 
F 5 HOH B 19 2019 2019 HOH HOH . 
F 5 HOH B 20 2020 2020 HOH HOH . 
F 5 HOH B 21 2021 2021 HOH HOH . 
F 5 HOH B 22 2022 2022 HOH HOH . 
F 5 HOH B 23 2023 2023 HOH HOH . 
F 5 HOH B 24 2024 2024 HOH HOH . 
F 5 HOH B 25 2025 2025 HOH HOH . 
F 5 HOH B 26 2026 2026 HOH HOH . 
F 5 HOH B 27 2027 2027 HOH HOH . 
F 5 HOH B 28 2028 2028 HOH HOH . 
F 5 HOH B 29 2029 2029 HOH HOH . 
F 5 HOH B 30 2030 2030 HOH HOH . 
F 5 HOH B 31 2031 2031 HOH HOH . 
F 5 HOH B 32 2032 2032 HOH HOH . 
F 5 HOH B 33 2033 2033 HOH HOH . 
F 5 HOH B 34 2034 2034 HOH HOH . 
F 5 HOH B 35 2035 2035 HOH HOH . 
F 5 HOH B 36 2036 2036 HOH HOH . 
F 5 HOH B 37 2037 2037 HOH HOH . 
F 5 HOH B 38 2038 2038 HOH HOH . 
F 5 HOH B 39 2039 2039 HOH HOH . 
F 5 HOH B 40 2040 2040 HOH HOH . 
F 5 HOH B 41 2041 2041 HOH HOH . 
F 5 HOH B 42 2042 2042 HOH HOH . 
F 5 HOH B 43 2043 2043 HOH HOH . 
F 5 HOH B 44 2044 2044 HOH HOH . 
F 5 HOH B 45 2045 2045 HOH HOH . 
F 5 HOH B 46 2046 2046 HOH HOH . 
F 5 HOH B 47 2047 2047 HOH HOH . 
F 5 HOH B 48 2048 2048 HOH HOH . 
F 5 HOH B 49 2049 2049 HOH HOH . 
F 5 HOH B 50 2050 2050 HOH HOH . 
F 5 HOH B 51 2051 2051 HOH HOH . 
F 5 HOH B 52 2052 2052 HOH HOH . 
F 5 HOH B 53 2053 2053 HOH HOH . 
F 5 HOH B 54 2054 2054 HOH HOH . 
F 5 HOH B 55 2055 2055 HOH HOH . 
F 5 HOH B 56 2056 2056 HOH HOH . 
F 5 HOH B 57 2057 2057 HOH HOH . 
F 5 HOH B 58 2058 2058 HOH HOH . 
F 5 HOH B 59 2059 2059 HOH HOH . 
F 5 HOH B 60 2060 2060 HOH HOH . 
F 5 HOH B 61 2061 2061 HOH HOH . 
F 5 HOH B 62 2062 2062 HOH HOH . 
F 5 HOH B 63 2063 2063 HOH HOH . 
F 5 HOH B 64 2064 2064 HOH HOH . 
F 5 HOH B 65 2065 2065 HOH HOH . 
F 5 HOH B 66 2066 2066 HOH HOH . 
F 5 HOH B 67 2067 2067 HOH HOH . 
F 5 HOH B 68 2068 2068 HOH HOH . 
F 5 HOH B 69 2069 2069 HOH HOH . 
F 5 HOH B 70 2070 2070 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C18 6OC . . . C 3 14.616 22.867 7.941 1 73.84 ? C18 6OC 1476 A 1 
HETATM 2 C C17 6OC . . . C 3 13.219 22.299 8.068 1 75.35 ? C17 6OC 1476 A 1 
HETATM 3 C C16 6OC . . . C 3 13.069 21.503 9.359 1 75.36 ? C16 6OC 1476 A 1 
HETATM 4 C C15 6OC . . . C 3 13.123 20.004 9.086 1 75.51 ? C15 6OC 1476 A 1 
HETATM 5 C C14 6OC . . . C 3 14.515 19.449 9.363 1 76.43 ? C14 6OC 1476 A 1 
HETATM 6 C C13 6OC . . . C 3 14.442 17.946 9.485 1 77.05 ? C13 6OC 1476 A 1 
HETATM 7 C C12 6OC . . . C 3 15.147 17.319 10.423 1 77.11 ? C12 6OC 1476 A 1 
HETATM 8 C C11 6OC . . . C 3 16.02 18.112 11.366 1 77.78 ? C11 6OC 1476 A 1 
HETATM 9 C C10 6OC . . . C 3 17.433 18.148 10.834 1 77.09 ? C10 6OC 1476 A 1 
HETATM 10 C C9 6OC . . . C 3 18.46 17.974 11.661 1 76.12 ? C9 6OC 1476 A 1 
HETATM 11 C C8 6OC . . . C 3 18.213 17.741 13.132 1 75.69 ? C8 6OC 1476 A 1 
HETATM 12 C C7 6OC . . . C 3 18.935 16.473 13.573 1 75.1 ? C7 6OC 1476 A 1 
HETATM 13 C C6 6OC . . . C 3 18.657 16.219 15.036 1 74.58 ? C6 6OC 1476 A 1 
HETATM 14 O O3 6OC . . . C 3 17.549 15.856 15.395 1 74.99 ? O3 6OC 1476 A 1 
HETATM 15 C C5 6OC . . . C 3 19.757 16.416 16.051 1 73.71 ? C5 6OC 1476 A 1 
HETATM 16 C C4 6OC . . . C 3 19.243 16.043 17.436 1 73.05 ? C4 6OC 1476 A 1 
HETATM 17 C C3 6OC . . . C 3 18.18 17.029 17.907 1 72.17 ? C3 6OC 1476 A 1 
HETATM 18 C C2 6OC . . . C 3 18.806 18.362 18.297 1 71.08 ? C2 6OC 1476 A 1 
HETATM 19 C C1 6OC . . . C 3 19.008 18.405 19.793 1 70.5 ? C1 6OC 1476 A 1 
HETATM 20 O O1 6OC . . . C 3 20.098 18.826 20.236 1 70.37 ? O1 6OC 1476 A 1 
HETATM 21 O O2 6OC . . . C 3 18.077 18.018 20.532 1 69.85 ? O2 6OC 1476 A 1 
#
_model_server_stats.io_time_ms              71 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           221 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           21 
#