data_2VVF # _model_server_result.job_id kDSYZAghhocMafMIw1t9QA _model_server_result.datetime_utc '2025-04-04 04:52:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2vvf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":1270}' # _entry.id 2VVF # _exptl.entry_id 2VVF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2VVF _cell.length_a 163.99 _cell.length_b 77.57 _cell.length_c 127.85 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2VVF _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS trimeric 3 software_defined_assembly 1 PQS trimeric 3 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,G,H,I,M,N,O 1 1 D,E,F,J,K,L,P,Q,R 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O MET 103 A MET 103 1_555 G CA CA . A CA 1270 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.101 ? metalc ? metalc2 A O ALA 105 A ALA 105 1_555 G CA CA . A CA 1270 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.535 ? metalc ? metalc3 A O PRO 141 A PRO 141 1_555 G CA CA . A CA 1270 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.628 ? metalc ? metalc4 A O TRP 143 A TRP 143 1_555 G CA CA . A CA 1270 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.754 ? metalc ? metalc5 B O MET 103 B MET 103 1_555 H CA CA . B CA 1270 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.849 ? metalc ? metalc6 B O ALA 105 B ALA 105 1_555 H CA CA . B CA 1270 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.589 ? metalc ? metalc7 B O PRO 141 B PRO 141 1_555 H CA CA . B CA 1270 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.651 ? metalc ? metalc8 B O TRP 143 B TRP 143 1_555 H CA CA . B CA 1270 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.598 ? metalc ? metalc9 C O MET 103 C MET 103 1_555 I CA CA . C CA 1270 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.665 ? metalc ? metalc10 C O ALA 105 C ALA 105 1_555 I CA CA . C CA 1270 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.669 ? metalc ? metalc11 C O PRO 141 C PRO 141 1_555 I CA CA . C CA 1270 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.733 ? metalc ? metalc12 C O TRP 143 C TRP 143 1_555 I CA CA . C CA 1270 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.572 ? metalc ? metalc13 D O MET 103 D MET 103 1_555 J CA CA . D CA 1270 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.96 ? metalc ? metalc14 D O ALA 105 D ALA 105 1_555 J CA CA . D CA 1270 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.63 ? metalc ? metalc15 D O PRO 141 D PRO 141 1_555 J CA CA . D CA 1270 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.628 ? metalc ? metalc16 D O TRP 143 D TRP 143 1_555 J CA CA . D CA 1270 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.613 ? metalc ? metalc17 E O MET 103 E MET 103 1_555 K CA CA . E CA 1270 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.617 ? metalc ? metalc18 E O ALA 105 E ALA 105 1_555 K CA CA . E CA 1270 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.572 ? metalc ? metalc19 E O PRO 141 E PRO 141 1_555 K CA CA . E CA 1270 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.808 ? metalc ? metalc20 E O TRP 143 E TRP 143 1_555 K CA CA . E CA 1270 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.62 ? metalc ? metalc21 F O MET 103 F MET 103 1_555 L CA CA . F CA 1270 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.005 ? metalc ? metalc22 F O ALA 105 F ALA 105 1_555 L CA CA . F CA 1270 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.63 ? metalc ? metalc23 F O PRO 141 F PRO 141 1_555 L CA CA . F CA 1270 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.557 ? metalc ? metalc24 F OG SER 142 F SER 142 1_555 L CA CA . F CA 1270 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.522 ? metalc ? metalc25 F O TRP 143 F TRP 143 1_555 L CA CA . F CA 1270 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.693 ? metalc ? metalc26 L CA CA . F CA 1270 1_555 R O HOH . F HOH 2017 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.701 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2VVF _atom_sites.fract_transf_matrix[1][1] 0.006098 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012892 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007822 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 CA A 1 1270 1270 CA CA . H 2 CA B 1 1270 1270 CA CA . I 2 CA C 1 1270 1270 CA CA . J 2 CA D 1 1270 1270 CA CA . K 2 CA E 1 1270 1270 CA CA . L 2 CA F 1 1270 1270 CA CA . M 3 HOH A 1 2001 2001 HOH HOH . M 3 HOH A 2 2002 2002 HOH HOH . M 3 HOH A 3 2003 2003 HOH HOH . M 3 HOH A 4 2004 2004 HOH HOH . M 3 HOH A 5 2005 2005 HOH HOH . M 3 HOH A 6 2006 2006 HOH HOH . M 3 HOH A 7 2007 2007 HOH HOH . M 3 HOH A 8 2008 2008 HOH HOH . M 3 HOH A 9 2009 2009 HOH HOH . M 3 HOH A 10 2010 2010 HOH HOH . M 3 HOH A 11 2011 2011 HOH HOH . M 3 HOH A 12 2012 2012 HOH HOH . M 3 HOH A 13 2013 2013 HOH HOH . M 3 HOH A 14 2014 2014 HOH HOH . M 3 HOH A 15 2015 2015 HOH HOH . M 3 HOH A 16 2016 2016 HOH HOH . M 3 HOH A 17 2017 2017 HOH HOH . M 3 HOH A 18 2018 2018 HOH HOH . M 3 HOH A 19 2019 2019 HOH HOH . M 3 HOH A 20 2020 2020 HOH HOH . M 3 HOH A 21 2021 2021 HOH HOH . M 3 HOH A 22 2022 2022 HOH HOH . M 3 HOH A 23 2023 2023 HOH HOH . M 3 HOH A 24 2024 2024 HOH HOH . M 3 HOH A 25 2025 2025 HOH HOH . M 3 HOH A 26 2026 2026 HOH HOH . M 3 HOH A 27 2027 2027 HOH HOH . M 3 HOH A 28 2028 2028 HOH HOH . M 3 HOH A 29 2029 2029 HOH HOH . M 3 HOH A 30 2030 2030 HOH HOH . M 3 HOH A 31 2031 2031 HOH HOH . M 3 HOH A 32 2032 2032 HOH HOH . M 3 HOH A 33 2033 2033 HOH HOH . M 3 HOH A 34 2034 2034 HOH HOH . M 3 HOH A 35 2035 2035 HOH HOH . N 3 HOH B 1 2001 2001 HOH HOH . N 3 HOH B 2 2002 2002 HOH HOH . N 3 HOH B 3 2003 2003 HOH HOH . N 3 HOH B 4 2004 2004 HOH HOH . N 3 HOH B 5 2005 2005 HOH HOH . N 3 HOH B 6 2006 2006 HOH HOH . N 3 HOH B 7 2007 2007 HOH HOH . N 3 HOH B 8 2008 2008 HOH HOH . N 3 HOH B 9 2009 2009 HOH HOH . N 3 HOH B 10 2010 2010 HOH HOH . N 3 HOH B 11 2011 2011 HOH HOH . N 3 HOH B 12 2012 2012 HOH HOH . N 3 HOH B 13 2013 2013 HOH HOH . N 3 HOH B 14 2014 2014 HOH HOH . N 3 HOH B 15 2015 2015 HOH HOH . N 3 HOH B 16 2016 2016 HOH HOH . N 3 HOH B 17 2017 2017 HOH HOH . N 3 HOH B 18 2018 2018 HOH HOH . N 3 HOH B 19 2019 2019 HOH HOH . N 3 HOH B 20 2020 2020 HOH HOH . N 3 HOH B 21 2021 2021 HOH HOH . N 3 HOH B 22 2022 2022 HOH HOH . N 3 HOH B 23 2023 2023 HOH HOH . N 3 HOH B 24 2024 2024 HOH HOH . N 3 HOH B 25 2025 2025 HOH HOH . N 3 HOH B 26 2026 2026 HOH HOH . N 3 HOH B 27 2027 2027 HOH HOH . N 3 HOH B 28 2028 2028 HOH HOH . N 3 HOH B 29 2029 2029 HOH HOH . N 3 HOH B 30 2030 2030 HOH HOH . N 3 HOH B 31 2031 2031 HOH HOH . N 3 HOH B 32 2032 2032 HOH HOH . N 3 HOH B 33 2033 2033 HOH HOH . N 3 HOH B 34 2034 2034 HOH HOH . N 3 HOH B 35 2035 2035 HOH HOH . N 3 HOH B 36 2036 2036 HOH HOH . N 3 HOH B 37 2037 2037 HOH HOH . N 3 HOH B 38 2038 2038 HOH HOH . N 3 HOH B 39 2039 2039 HOH HOH . N 3 HOH B 40 2040 2040 HOH HOH . O 3 HOH C 1 2001 2001 HOH HOH . O 3 HOH C 2 2002 2002 HOH HOH . O 3 HOH C 3 2003 2003 HOH HOH . O 3 HOH C 4 2004 2004 HOH HOH . O 3 HOH C 5 2005 2005 HOH HOH . O 3 HOH C 6 2006 2006 HOH HOH . O 3 HOH C 7 2007 2007 HOH HOH . O 3 HOH C 8 2008 2008 HOH HOH . O 3 HOH C 9 2009 2009 HOH HOH . O 3 HOH C 10 2010 2010 HOH HOH . O 3 HOH C 11 2011 2011 HOH HOH . O 3 HOH C 12 2012 2012 HOH HOH . O 3 HOH C 13 2013 2013 HOH HOH . O 3 HOH C 14 2014 2014 HOH HOH . O 3 HOH C 15 2015 2015 HOH HOH . O 3 HOH C 16 2016 2016 HOH HOH . O 3 HOH C 17 2017 2017 HOH HOH . O 3 HOH C 18 2018 2018 HOH HOH . O 3 HOH C 19 2019 2019 HOH HOH . O 3 HOH C 20 2020 2020 HOH HOH . O 3 HOH C 21 2021 2021 HOH HOH . O 3 HOH C 22 2022 2022 HOH HOH . O 3 HOH C 23 2023 2023 HOH HOH . O 3 HOH C 24 2024 2024 HOH HOH . O 3 HOH C 25 2025 2025 HOH HOH . O 3 HOH C 26 2026 2026 HOH HOH . P 3 HOH D 1 2001 2001 HOH HOH . P 3 HOH D 2 2002 2002 HOH HOH . P 3 HOH D 3 2003 2003 HOH HOH . P 3 HOH D 4 2004 2004 HOH HOH . P 3 HOH D 5 2005 2005 HOH HOH . P 3 HOH D 6 2006 2006 HOH HOH . P 3 HOH D 7 2007 2007 HOH HOH . P 3 HOH D 8 2008 2008 HOH HOH . P 3 HOH D 9 2009 2009 HOH HOH . P 3 HOH D 10 2010 2010 HOH HOH . P 3 HOH D 11 2011 2011 HOH HOH . P 3 HOH D 12 2012 2012 HOH HOH . P 3 HOH D 13 2013 2013 HOH HOH . P 3 HOH D 14 2014 2014 HOH HOH . P 3 HOH D 15 2015 2015 HOH HOH . P 3 HOH D 16 2016 2016 HOH HOH . P 3 HOH D 17 2017 2017 HOH HOH . P 3 HOH D 18 2018 2018 HOH HOH . P 3 HOH D 19 2019 2019 HOH HOH . P 3 HOH D 20 2020 2020 HOH HOH . P 3 HOH D 21 2021 2021 HOH HOH . P 3 HOH D 22 2022 2022 HOH HOH . P 3 HOH D 23 2023 2023 HOH HOH . P 3 HOH D 24 2024 2024 HOH HOH . P 3 HOH D 25 2025 2025 HOH HOH . P 3 HOH D 26 2026 2026 HOH HOH . P 3 HOH D 27 2027 2027 HOH HOH . P 3 HOH D 28 2028 2028 HOH HOH . Q 3 HOH E 1 2001 2001 HOH HOH . Q 3 HOH E 2 2002 2002 HOH HOH . Q 3 HOH E 3 2003 2003 HOH HOH . Q 3 HOH E 4 2004 2004 HOH HOH . Q 3 HOH E 5 2005 2005 HOH HOH . Q 3 HOH E 6 2006 2006 HOH HOH . Q 3 HOH E 7 2007 2007 HOH HOH . Q 3 HOH E 8 2008 2008 HOH HOH . Q 3 HOH E 9 2009 2009 HOH HOH . Q 3 HOH E 10 2010 2010 HOH HOH . Q 3 HOH E 11 2011 2011 HOH HOH . Q 3 HOH E 12 2012 2012 HOH HOH . Q 3 HOH E 13 2013 2013 HOH HOH . Q 3 HOH E 14 2014 2014 HOH HOH . Q 3 HOH E 15 2015 2015 HOH HOH . Q 3 HOH E 16 2016 2016 HOH HOH . Q 3 HOH E 17 2017 2017 HOH HOH . Q 3 HOH E 18 2018 2018 HOH HOH . Q 3 HOH E 19 2019 2019 HOH HOH . Q 3 HOH E 20 2020 2020 HOH HOH . Q 3 HOH E 21 2021 2021 HOH HOH . Q 3 HOH E 22 2022 2022 HOH HOH . Q 3 HOH E 23 2023 2023 HOH HOH . Q 3 HOH E 24 2024 2024 HOH HOH . Q 3 HOH E 25 2025 2025 HOH HOH . Q 3 HOH E 26 2026 2026 HOH HOH . Q 3 HOH E 27 2027 2027 HOH HOH . Q 3 HOH E 28 2028 2028 HOH HOH . Q 3 HOH E 29 2029 2029 HOH HOH . Q 3 HOH E 30 2030 2030 HOH HOH . R 3 HOH F 1 2001 2001 HOH HOH . R 3 HOH F 2 2002 2002 HOH HOH . R 3 HOH F 3 2003 2003 HOH HOH . R 3 HOH F 4 2004 2004 HOH HOH . R 3 HOH F 5 2005 2005 HOH HOH . R 3 HOH F 6 2006 2006 HOH HOH . R 3 HOH F 7 2007 2007 HOH HOH . R 3 HOH F 8 2008 2008 HOH HOH . R 3 HOH F 9 2009 2009 HOH HOH . R 3 HOH F 10 2010 2010 HOH HOH . R 3 HOH F 11 2011 2011 HOH HOH . R 3 HOH F 12 2012 2012 HOH HOH . R 3 HOH F 13 2013 2013 HOH HOH . R 3 HOH F 14 2014 2014 HOH HOH . R 3 HOH F 15 2015 2015 HOH HOH . R 3 HOH F 16 2016 2016 HOH HOH . R 3 HOH F 17 2017 2017 HOH HOH . R 3 HOH F 18 2018 2018 HOH HOH . R 3 HOH F 19 2019 2019 HOH HOH . R 3 HOH F 20 2020 2020 HOH HOH . R 3 HOH F 21 2021 2021 HOH HOH . R 3 HOH F 22 2022 2022 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id H _atom_site.label_entity_id 2 _atom_site.Cartn_x 335.52 _atom_site.Cartn_y 163.017 _atom_site.Cartn_z 371.049 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 27.05 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 1270 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 225 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #