data_2VVS # _model_server_result.job_id TTB89XICWuKV9fG0BvzhYA _model_server_result.datetime_utc '2024-10-10 09:28:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2vvs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":900}' # _entry.id 2VVS # _exptl.entry_id 2VVS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 353.327 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'O-(2-ACETAMIDO-2-DEOXY D-GLUCOPYRANOSYLIDENE) AMINO-N-PHENYLCARBAMATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 96.97 _cell.angle_gamma 90 _cell.entry_id 2VVS _cell.length_a 185.64 _cell.length_b 51.34 _cell.length_c 81.46 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2VVS _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C15 H19 N3 O7' _chem_comp.formula_weight 353.327 _chem_comp.id OAN _chem_comp.mon_nstd_flag . _chem_comp.name 'O-(2-ACETAMIDO-2-DEOXY D-GLUCOPYRANOSYLIDENE) AMINO-N-PHENYLCARBAMATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms PUGNAc # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAH CAG OAN sing 237 n n CAH HAH1 OAN sing 238 n n CAH HAH2 OAN sing 239 n n CAH HAH3 OAN sing 240 n n CAG OAN OAN doub 241 n n CAG NAI OAN sing 242 n n NAI CAB OAN sing 243 n n NAI HAI OAN sing 244 n n CAB CAC OAN sing 245 n n CAB CAA OAN sing 246 n n CAB HAB OAN sing 247 n n CAC OAJ OAN sing 248 n n CAC CAD OAN sing 249 n n CAC HAC OAN sing 250 n n OAJ HAJ OAN sing 251 n n CAD OAK OAN sing 252 n n CAD CAE OAN sing 253 n n CAD HAD OAN sing 254 n n OAK HAK OAN sing 255 n n CAE CAF OAN sing 256 n n CAE OAL OAN sing 257 n n CAE HAE OAN sing 258 n n CAF OAM OAN sing 259 n n CAF HAF1 OAN sing 260 n n CAF HAF2 OAN sing 261 n n OAM HAM OAN sing 262 n n OAL CAA OAN sing 263 n n CAA NAY OAN doub 264 z n NAY OAQ OAN sing 265 n n OAQ CAP OAN sing 266 n n CAP OAR OAN doub 267 n n CAP NAO OAN sing 268 n n NAO CAS OAN sing 269 n n NAO HAO OAN sing 270 n n CAS CAT OAN doub 271 n y CAS CAX OAN sing 272 n y CAT CAU OAN sing 273 n y CAT HAT OAN sing 274 n n CAU CAV OAN doub 275 n y CAU HAU OAN sing 276 n n CAV CAW OAN sing 277 n y CAV HAV OAN sing 278 n n CAW CAX OAN doub 279 n y CAW HAW OAN sing 280 n n CAX HAX OAN sing 281 n n # _atom_sites.entry_id 2VVS _atom_sites.fract_transf_matrix[1][1] 0.005387 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000659 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019478 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012367 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 OAN A 1 900 900 OAN OAN . C 3 HOH A 1 2001 2001 HOH HOH . C 3 HOH A 2 2002 2002 HOH HOH . C 3 HOH A 3 2003 2003 HOH HOH . C 3 HOH A 4 2004 2004 HOH HOH . C 3 HOH A 5 2005 2005 HOH HOH . C 3 HOH A 6 2006 2006 HOH HOH . C 3 HOH A 7 2007 2007 HOH HOH . C 3 HOH A 8 2008 2008 HOH HOH . C 3 HOH A 9 2009 2009 HOH HOH . C 3 HOH A 10 2010 2010 HOH HOH . C 3 HOH A 11 2011 2011 HOH HOH . C 3 HOH A 12 2012 2012 HOH HOH . C 3 HOH A 13 2013 2013 HOH HOH . C 3 HOH A 14 2014 2014 HOH HOH . C 3 HOH A 15 2015 2015 HOH HOH . C 3 HOH A 16 2016 2016 HOH HOH . C 3 HOH A 17 2017 2017 HOH HOH . C 3 HOH A 18 2018 2018 HOH HOH . C 3 HOH A 19 2019 2019 HOH HOH . C 3 HOH A 20 2020 2020 HOH HOH . C 3 HOH A 21 2021 2021 HOH HOH . C 3 HOH A 22 2022 2022 HOH HOH . C 3 HOH A 23 2023 2023 HOH HOH . C 3 HOH A 24 2024 2024 HOH HOH . C 3 HOH A 25 2025 2025 HOH HOH . C 3 HOH A 26 2026 2026 HOH HOH . C 3 HOH A 27 2027 2027 HOH HOH . C 3 HOH A 28 2028 2028 HOH HOH . C 3 HOH A 29 2029 2029 HOH HOH . C 3 HOH A 30 2030 2030 HOH HOH . C 3 HOH A 31 2031 2031 HOH HOH . C 3 HOH A 32 2032 2032 HOH HOH . C 3 HOH A 33 2033 2033 HOH HOH . C 3 HOH A 34 2034 2034 HOH HOH . C 3 HOH A 35 2035 2035 HOH HOH . C 3 HOH A 36 2036 2036 HOH HOH . C 3 HOH A 37 2037 2037 HOH HOH . C 3 HOH A 38 2038 2038 HOH HOH . C 3 HOH A 39 2039 2039 HOH HOH . C 3 HOH A 40 2040 2040 HOH HOH . C 3 HOH A 41 2041 2041 HOH HOH . C 3 HOH A 42 2042 2042 HOH HOH . C 3 HOH A 43 2043 2043 HOH HOH . C 3 HOH A 44 2044 2044 HOH HOH . C 3 HOH A 45 2045 2045 HOH HOH . C 3 HOH A 46 2046 2046 HOH HOH . C 3 HOH A 47 2047 2047 HOH HOH . C 3 HOH A 48 2048 2048 HOH HOH . C 3 HOH A 49 2049 2049 HOH HOH . C 3 HOH A 50 2050 2050 HOH HOH . C 3 HOH A 51 2051 2051 HOH HOH . C 3 HOH A 52 2052 2052 HOH HOH . C 3 HOH A 53 2053 2053 HOH HOH . C 3 HOH A 54 2054 2054 HOH HOH . C 3 HOH A 55 2055 2055 HOH HOH . C 3 HOH A 56 2056 2056 HOH HOH . C 3 HOH A 57 2057 2057 HOH HOH . C 3 HOH A 58 2058 2058 HOH HOH . C 3 HOH A 59 2059 2059 HOH HOH . C 3 HOH A 60 2060 2060 HOH HOH . C 3 HOH A 61 2061 2061 HOH HOH . C 3 HOH A 62 2062 2062 HOH HOH . C 3 HOH A 63 2063 2063 HOH HOH . C 3 HOH A 64 2064 2064 HOH HOH . C 3 HOH A 65 2065 2065 HOH HOH . C 3 HOH A 66 2066 2066 HOH HOH . C 3 HOH A 67 2067 2067 HOH HOH . C 3 HOH A 68 2068 2068 HOH HOH . C 3 HOH A 69 2069 2069 HOH HOH . C 3 HOH A 70 2070 2070 HOH HOH . C 3 HOH A 71 2071 2071 HOH HOH . C 3 HOH A 72 2072 2072 HOH HOH . C 3 HOH A 73 2073 2073 HOH HOH . C 3 HOH A 74 2074 2074 HOH HOH . C 3 HOH A 75 2075 2075 HOH HOH . C 3 HOH A 76 2076 2076 HOH HOH . C 3 HOH A 77 2077 2077 HOH HOH . C 3 HOH A 78 2078 2078 HOH HOH . C 3 HOH A 79 2079 2079 HOH HOH . C 3 HOH A 80 2080 2080 HOH HOH . C 3 HOH A 81 2081 2081 HOH HOH . C 3 HOH A 82 2082 2082 HOH HOH . C 3 HOH A 83 2083 2083 HOH HOH . C 3 HOH A 84 2084 2084 HOH HOH . C 3 HOH A 85 2085 2085 HOH HOH . C 3 HOH A 86 2086 2086 HOH HOH . C 3 HOH A 87 2087 2087 HOH HOH . C 3 HOH A 88 2088 2088 HOH HOH . C 3 HOH A 89 2089 2089 HOH HOH . C 3 HOH A 90 2090 2090 HOH HOH . C 3 HOH A 91 2091 2091 HOH HOH . C 3 HOH A 92 2092 2092 HOH HOH . C 3 HOH A 93 2093 2093 HOH HOH . C 3 HOH A 94 2094 2094 HOH HOH . C 3 HOH A 95 2095 2095 HOH HOH . C 3 HOH A 96 2096 2096 HOH HOH . C 3 HOH A 97 2097 2097 HOH HOH . C 3 HOH A 98 2098 2098 HOH HOH . C 3 HOH A 99 2099 2099 HOH HOH . C 3 HOH A 100 2100 2100 HOH HOH . C 3 HOH A 101 2101 2101 HOH HOH . C 3 HOH A 102 2102 2102 HOH HOH . C 3 HOH A 103 2103 2103 HOH HOH . C 3 HOH A 104 2104 2104 HOH HOH . C 3 HOH A 105 2105 2105 HOH HOH . C 3 HOH A 106 2106 2106 HOH HOH . C 3 HOH A 107 2107 2107 HOH HOH . C 3 HOH A 108 2108 2108 HOH HOH . C 3 HOH A 109 2109 2109 HOH HOH . C 3 HOH A 110 2110 2110 HOH HOH . C 3 HOH A 111 2111 2111 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAH OAN . . . B 2 -11.044 -11.048 5.014 1 38.62 ? CAH OAN 900 A 1 HETATM 2 C CAG OAN . . . B 2 -10.101 -10.662 6.155 1 40.88 ? CAG OAN 900 A 1 HETATM 3 O OAN OAN . . . B 2 -10.028 -9.494 6.556 1 37.32 ? OAN OAN 900 A 1 HETATM 4 N NAI OAN . . . B 2 -9.39 -11.696 6.629 1 41.01 ? NAI OAN 900 A 1 HETATM 5 C CAB OAN . . . B 2 -8.491 -11.639 7.805 1 40.14 ? CAB OAN 900 A 1 HETATM 6 C CAC OAN . . . B 2 -9.333 -11.355 9.085 1 36.97 ? CAC OAN 900 A 1 HETATM 7 O OAJ OAN . . . B 2 -9.689 -12.57 9.78 1 34.53 ? OAJ OAN 900 A 1 HETATM 8 C CAD OAN . . . B 2 -8.602 -10.385 10.036 1 37.26 ? CAD OAN 900 A 1 HETATM 9 O OAK OAN . . . B 2 -9.391 -10.079 11.169 1 35.47 ? OAK OAN 900 A 1 HETATM 10 C CAE OAN . . . B 2 -8.257 -9.081 9.302 1 38.26 ? CAE OAN 900 A 1 HETATM 11 C CAF OAN . . . B 2 -7.734 -8.011 10.259 1 36.91 ? CAF OAN 900 A 1 HETATM 12 O OAM OAN . . . B 2 -6.394 -8.264 10.625 1 40.93 ? OAM OAN 900 A 1 HETATM 13 O OAL OAN . . . B 2 -7.337 -9.363 8.2 1 41.61 ? OAL OAN 900 A 1 HETATM 14 C CAA OAN . . . B 2 -7.293 -10.64 7.675 1 42.81 ? CAA OAN 900 A 1 HETATM 15 N NAY OAN . . . B 2 -6.104 -11.015 7.165 1 46.56 ? NAY OAN 900 A 1 HETATM 16 O OAQ OAN . . . B 2 -5.099 -10.05 7.172 1 51.67 ? OAQ OAN 900 A 1 HETATM 17 C CAP OAN . . . B 2 -3.864 -10.469 6.748 1 52.94 ? CAP OAN 900 A 1 HETATM 18 O OAR OAN . . . B 2 -3.657 -11.635 6.382 1 55.94 ? OAR OAN 900 A 1 HETATM 19 N NAO OAN . . . B 2 -2.901 -9.533 6.779 1 52.38 ? NAO OAN 900 A 1 HETATM 20 C CAS OAN . . . B 2 -1.649 -9.719 6.348 1 51.12 ? CAS OAN 900 A 1 HETATM 21 C CAT OAN . . . B 2 -1.097 -10.999 6.197 1 50.72 ? CAT OAN 900 A 1 HETATM 22 C CAU OAN . . . B 2 0.196 -11.149 5.707 1 51.7 ? CAU OAN 900 A 1 HETATM 23 C CAV OAN . . . B 2 0.938 -10.006 5.376 1 52.68 ? CAV OAN 900 A 1 HETATM 24 C CAW OAN . . . B 2 0.388 -8.722 5.531 1 51.87 ? CAW OAN 900 A 1 HETATM 25 C CAX OAN . . . B 2 -0.914 -8.585 6.004 1 51.63 ? CAX OAN 900 A 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 25 #